Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces ambofaciens ATCC 23877, the spiramycin producer
Submitted (29-JUL-2015) Faculte des Sciences et Technologies, Universite de Lorraine, Boulevard des Aiguillettes, Vandoeuvre les Nancy F-54506, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP012383.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC workbench v. 7.0.3\nGenome Coverage :: 114\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 06:54:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,515\nCDSs (total) :: 7,423\nGenes (coding) :: 7,238\nCDSs (with protein) :: 7,238\nGenes (RNA) :: 92\nrRNAs :: 5, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 6, 6 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 3\nPseudo Genes (total) :: 185\nCDSs (without protein) :: 185\nPseudo Genes (ambiguous residues) :: 0 of 185\nPseudo Genes (frameshifted) :: 71 of 185\nPseudo Genes (incomplete) :: 139 of 185\nPseudo Genes (internal stop) :: 12 of 185\nPseudo Genes (multiple problems) :: 35 of 185\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009721262.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009998296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446002.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018523016.1
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018825228.1
COORDINATES: protein motif:HMM:NF040299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004980428.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007274011.1
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_006769534.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019899939.1
COORDINATES: protein motif:HMM:NF017103.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018521482.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003986279.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015776.2
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_004005998.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018541348.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000069712.1
COORDINATES: similar to AA sequence:RefSeq:WP_019761999.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979798.1
COORDINATES: similar to AA sequence:RefSeq:WP_007493568.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017520.2
COORDINATES: similar to AA sequence:RefSeq:WP_009721188.1
COORDINATES: protein motif:HMM:NF039652.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721268.1