Gloeobacter morelensis MG652769 plasmid pGMOR2, complete sequence.
type: Entry
definition: Gloeobacter morelensis MG652769 plasmid pGMOR2, complete sequence.
sequence version: NZ_CP063847.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP063847.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16538668
keyword: RefSeq
source: Gloeobacter morelensis MG652769
organism: Gloeobacter morelensis MG652769
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter morelensis.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP063847.1.\nBacteria and source DNA available from Jimmy Saw.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 422.0x\nSequencing Technology :: Illumina; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 18:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,941\nCDSs (total) :: 4,889\nGenes (coding) :: 4,829\nCDSs (with protein) :: 4,829\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 5\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 18 of 60\nPseudo Genes (incomplete) :: 46 of 60\nPseudo Genes (internal stop) :: 6 of 60\nPseudo Genes (multiple problems) :: 9 of 60\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8839
topology: circular
so has quality: SO_0000988
location: 1..8839
location: region:1-8839:1
RO_0002162: 2781736

NZ_CP063847
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16538668
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequencing of a novel Gloeobacter species from a waterfall cave in Mexico
author: Saw, J.H.
author: Cardona, T.
author: Montejano, G.
journal: Genome Biol Evol (2021) In press

2
title: Direct Submission
author: Saw, J.H.
author: Cardona, T.
author: Montejano, G.
journal: Submitted (29-OCT-2020) Biological Sciences, The George Washington University, 2029 G St NW Bell 302, Washington, DC 20052, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8839:1
position: 8839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8839:1:source
so part of: sequence
organism: Gloeobacter morelensis MG652769
mol type: genomic DNA
isolate: MG652769
isolation source: cave
type material: reference strain of Gloeobacter morelensis
plasmid: pGMOR2
country: Mexico
collection date: 2016
collected by: Gustavo Montejano

2781736
type: Taxonomy
SIO_000068: taxonomy

ISF26_RS24590
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24590
so part of: sequence
location: join(8793..8839,1..445)
location: region:1-8839:1
so has part: feature:8793-8839:1:exon
so has part: feature:1-445:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:8793-8839:1:exon

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-445:1:exon

position:445:1
position: 445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ISF26_RS24590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNKEQAAAFLGVSLRTLERYTQQGKLGVTYERGSTGQMATYDPEELARFRATLSTSVTKSATVPPTAAPTASDNALAPLANPGEALASLVAILDGLGYRRERERPAAALGEKMLLTLGEAQALTGLSRDHLKRAIAEGELRAGKLGRAWRIKRSHLVSFVDGL
SIO_010081: ISF26_RS24590
subclass of: SO_0000673
so part of: ISF26_RS24590
location: join(8793..8839,1..445)
location: region:1-8839:1
so has part: feature:8793-8839:1:exon
so has part: feature:1-445:1:exon

WP_230844452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-8839:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-445:1:exon

ISF26_RS24595
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24595
old locus tag: ISF26_24540
so part of: sequence
location: 607..1335
location: region:607-1335:1
so has part: feature:607-1335:1:exon
subclass of: SO_0000010

position:607:1
position: 607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1335:1
position: 1335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:607-1335:1:exon

ISF26_RS24595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24595
old locus tag: ISF26_24540
inference: COORDINATES: protein motif:HMM:NF025030.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HEAT repeat domain-containing protein
translation: MSNKAGARLSQYLVKAYIRSWFAAISVSMAILQGHVTAVYAQSQDYSLTASYTDKLQSTNEQERVEASFALRRLGAKTASTEQHLIAALKDENRTVRFNVASTLGDIPSLSKSGVAALIQATRDTDVLVRTAAVRSLGQLKPPSLEALPALIYALENNTDRNIRLLAAEAVGQFGPPAADAVTALIEVLQDQVPAMRIIAAVALGKIGPTAEVALPALFQATQDEDENVRKFARQAIESINS
SIO_010081: ISF26_RS24595
subclass of: SO_0000673
so part of: ISF26_RS24595
location: 607..1335
location: region:607-1335:1
so has part: feature:607-1335:1:exon

WP_230844453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:607-1335:1:exon

ISF26_RS24600
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24600
so part of: sequence
location: complement(1375..1899)
location: region:1375-1899:-1
so has part: feature:1375-1899:-1:exon
subclass of: SO_0000010

position:1375:-1
position: 1375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1899:-1
position: 1899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1375-1899:-1:exon

ISF26_RS24600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24600
inference: COORDINATES: protein motif:HMM:NF033564.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISAs1 family transposase
translation: MGSGNHYIAAVKGNQPKLLARVRENFAIEEQSENEERGHHRLEKRRVSICKAPECLSDWAGVATLIRIERYREYRGNVTMQTDWYMSSLQASASELGRRIRGHWGVENKVHYPKDVTFGEDRSRIRTLPLVQVWSVARSFALNLYRSLLMENRAQAQRRCMFGLSVLKILFRMK
SIO_010081: ISF26_RS24600
subclass of: SO_0000673
so part of: ISF26_RS24600
location: complement(1375..1899)
location: region:1375-1899:-1
so has part: feature:1375-1899:-1:exon

WP_230844454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1375-1899:-1:exon

ISF26_RS24605
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24605
so part of: sequence
location: complement(1814..2464)
location: region:1814-2464:-1
so has part: feature:1814-2464:-1:exon
subclass of: SO_0000010

position:1814:-1
position: 1814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2464:-1
position: 2464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1814-2464:-1:exon

ISF26_RS24605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24605
inference: COORDINATES: protein motif:HMM:NF033564.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISAs1 family transposase
translation: MRQFAIFKAFENIPDPRRGAGRRHPLPLCLTIFTMAVVAGNRGFLAIDDWVKANSEALIELFEIEKERLPSYSTLRRVLMHIDYQQYATSLATFLQVEPLPGETIALDGKVLKGSYCVQHNNPTSEPHAAIQIIHAYLVEHGWVVGHQQVDQKSNEIKALPELIEQLALAGVVFTFDAINTQKKLRNHRGKRQSLHRRCQRQSAKTAGKSQGEFRN
SIO_010081: ISF26_RS24605
subclass of: SO_0000673
so part of: ISF26_RS24605
location: complement(1814..2464)
location: region:1814-2464:-1
so has part: feature:1814-2464:-1:exon

WP_230844455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1814-2464:-1:exon

ISF26_RS24610
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24610
old locus tag: ISF26_24550
so part of: sequence
location: complement(3378..3635)
location: region:3378-3635:-1
so has part: feature:3378-3635:-1:exon
subclass of: SO_0000010

position:3378:-1
position: 3378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3635:-1
position: 3635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3378-3635:-1:exon

ISF26_RS24610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24610
old locus tag: ISF26_24550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTEQSHLAARVELALSRNETGEWSFDWRAVGLAAAGGVCGALLTVGLLQLVPPKMSNLQNNYLHQIWERSTWTMTKLERLEKRR
SIO_010081: ISF26_RS24610
subclass of: SO_0000673
so part of: ISF26_RS24610
location: complement(3378..3635)
location: region:3378-3635:-1
so has part: feature:3378-3635:-1:exon

WP_230844456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3378-3635:-1:exon

ISF26_RS24615
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24615
old locus tag: ISF26_24555
so part of: sequence
location: complement(3556..4761)
location: region:3556-4761:-1
so has part: feature:3556-4761:-1:exon
subclass of: SO_0000010

position:3556:-1
position: 3556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4761:-1
position: 4761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3556-4761:-1:exon

ISF26_RS24615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24615
old locus tag: ISF26_24555
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIGKLSKGRGFRGCLDYVLKKEGAQLIGGNMFGRTPRELATEFGVSRQLRPGLNKAVAHVSLSLAPGEHLGDQEWCELAEGYLRKMGFLSEAQAPAQWVIARHSDTAHEHCHIVASRVRLDGGVVNDAHDYARNDAALRQLEEEYCLQTVPSIREFDARCPAGPRVKRAELELAERLAAQTGEGVLPPKLVIAAAIDRAIDTGDGTVEDLAGRLSEAGVEVRGRPGAGGELSGLSYGLMDWPGGMQRAFQGNRIGRDYGYRRLRERLAERERQLEWEARRVASAGRGAAAAARHGEAGGVERGPGSSAGAGERPAAAAGDLDERLGKVAAALGGNRAVDRPAASAGGGLKPGVGSVEHAHGAGRGDEGAEPEIAKLADGTEPPGRARRTRPEPERDWGMEL
SIO_010081: ISF26_RS24615
subclass of: SO_0000673
so part of: ISF26_RS24615
location: complement(3556..4761)
location: region:3556-4761:-1
so has part: feature:3556-4761:-1:exon

WP_256997594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3556-4761:-1:exon

ISF26_RS24620
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
gene: mobC
locus tag: ISF26_RS24620
old locus tag: ISF26_24560
so part of: sequence
location: complement(4742..5110)
location: region:4742-5110:-1
so has part: feature:4742-5110:-1:exon
subclass of: SO_0000010

position:4742:-1
position: 4742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5110:-1
position: 5110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4742-5110:-1:exon

ISF26_RS24620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
gene: mobC
locus tag: ISF26_RS24620
old locus tag: ISF26_24560
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MEVARPRLKAEEVRSEILPVRLSPVELAEVCRKASAAGLRPSEYMRGLALGHRLAPTVPPVNVETYRELVKIGVNLNQLARAINTAVKAGERLEISAEDVQSVSRLLSRVGAEVVGNDRQAE
SIO_010081: ISF26_RS24620
subclass of: SO_0000673
so part of: ISF26_RS24620
location: complement(4742..5110)
location: region:4742-5110:-1
so has part: feature:4742-5110:-1:exon

WP_230844447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4742-5110:-1:exon

ISF26_RS24625
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24625
old locus tag: ISF26_24565
so part of: sequence
location: 5355..6185
location: region:5355-6185:1
so has part: feature:5355-6185:1:exon
subclass of: SO_0000010

position:5355:1
position: 5355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6185:1
position: 6185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5355-6185:1:exon

ISF26_RS24625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24625
old locus tag: ISF26_24565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTFLSELTELLKAIPQLLASVGSIAVAAVTALAAYRARSNASASQKQTHKLDVAAVEHAPLDDKSTLPLKILFGGLTFLFVAVLVALGTAAFTPPGVNIFFFLFNAFAFVFSVIVYALFLSGVDNLMANEAQVHLRNDCRTILEESWRILQSLGIKRLITYQQTDAGSLLVAREGVGWFSSLKTVTLRVTPVQNEPGLFRLHIESTSSRSPEKIKLSAGLHSQIVSDFLQRLMPLQPPAPSQISPTVVANPTELLPPPPSVPVETNNGSRQDTSG
SIO_010081: ISF26_RS24625
subclass of: SO_0000673
so part of: ISF26_RS24625
location: 5355..6185
location: region:5355-6185:1
so has part: feature:5355-6185:1:exon

WP_230844448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5355-6185:1:exon

ISF26_RS24630
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24630
old locus tag: ISF26_24570
so part of: sequence
location: complement(6366..6590)
location: region:6366-6590:-1
so has part: feature:6366-6590:-1:exon
subclass of: SO_0000010

position:6366:-1
position: 6366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6590:-1
position: 6590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6366-6590:-1:exon

ISF26_RS24630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24630
old locus tag: ISF26_24570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENTEDSPLWMPDEKTRQGLVEQLRAARVGLRQSSEAIQLVIDELEQRQADSPLGRFQARQRAEAQANRAETA
SIO_010081: ISF26_RS24630
subclass of: SO_0000673
so part of: ISF26_RS24630
location: complement(6366..6590)
location: region:6366-6590:-1
so has part: feature:6366-6590:-1:exon

WP_230844449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6366-6590:-1:exon

ISF26_RS24635
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24635
old locus tag: ISF26_24575
so part of: sequence
location: complement(6587..6928)
location: region:6587-6928:-1
so has part: feature:6587-6928:-1:exon
subclass of: SO_0000010

position:6587:-1
position: 6587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6928:-1
position: 6928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6587-6928:-1:exon

ISF26_RS24635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24635
old locus tag: ISF26_24575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLPETLSRQMFGLMARLLAVLDLAMVTEQALLARHGENADTLPSLEELTGVREDSRQYYRRLSNLLLLIADTEPEPAADAVRKLRQTGVLGAEHIESALLVVEHIKRTWRLP
SIO_010081: ISF26_RS24635
subclass of: SO_0000673
so part of: ISF26_RS24635
location: complement(6587..6928)
location: region:6587-6928:-1
so has part: feature:6587-6928:-1:exon

WP_230844450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6587-6928:-1:exon

ISF26_RS24640
type: Gene
subclass of: SO_0000704
RO_0002162: 2781736
locus tag: ISF26_RS24640
old locus tag: ISF26_24580
so part of: sequence
location: complement(6915..8363)
location: region:6915-8363:-1
so has part: feature:6915-8363:-1:exon
subclass of: SO_0000010

position:6915:-1
position: 6915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8363:-1
position: 8363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6915-8363:-1:exon

ISF26_RS24640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2781736
locus tag: ISF26_RS24640
old locus tag: ISF26_24580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVHERISRSRAHTIGRIVEAVIGLVDRAGYCWASAETIASYAGCDRSTVFRLWPEIEFSGLLVSVRQAHGPNRVYLGSILIDRMLELLDTPGWAMNPASPFWLRYRQWLGQSVAYRHSRAALEPSALKSRLNLLPNCLEDSDQIQRSEDLAEPGAFPPQSADDTTATPTGKGALRPPLCSGPCLPSLGRETEQLSGGGNVSHTHDGTAEQPRSPKTIVTPGRARVSAALQAVLDRWPAVAARLDERCLRNLVAFRHDLRRIDQVLAMADAQPIGSFWRGVSAWVTMALKRNLQPNRHQQRHIDANAQTRRLQRDSARGVGDPLCQDGSAPPAAASSGEPPPASERCPPPRPADGPPVVPSSASAAPPPVSPVVQLLRASPHLPAALRARLQALARTVVPPPGSPPGEQPPTAAVVAGSGEPLIDLAALFAEAAAAGLAARRTRKKVHPARRRCAAAPGQLSLWEPPSLSSSPPLPGETDAPA
SIO_010081: ISF26_RS24640
subclass of: SO_0000673
so part of: ISF26_RS24640
location: complement(6915..8363)
location: region:6915-8363:-1
so has part: feature:6915-8363:-1:exon

WP_230844451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6915-8363:-1:exon