Gloeobacter morelensis MG652769 plasmid pGMOR1, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter morelensis.
Complete genome sequencing of a novel Gloeobacter species from a waterfall cave in Mexico
Submitted (29-OCT-2020) Biological Sciences, The George Washington University, 2029 G St NW Bell 302, Washington, DC 20052, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP063846.1.\nBacteria and source DNA available from Jimmy Saw.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 422.0x\nSequencing Technology :: Illumina; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 18:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,941\nCDSs (total) :: 4,889\nGenes (coding) :: 4,829\nCDSs (with protein) :: 4,829\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 5\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 18 of 60\nPseudo Genes (incomplete) :: 46 of 60\nPseudo Genes (internal stop) :: 6 of 60\nPseudo Genes (multiple problems) :: 9 of 60\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Gloeobacter morelensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_020160093.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF014244.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017323439.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF025241.2
strawberry notch C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:TIGR01426.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014614.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: protein motif:HMM:NF016432.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:TIGR00027.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_019631702.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF013658.2
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010478816.1
COORDINATES: similar to AA sequence:RefSeq:WP_013987613.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019498.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02807.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-MYXAN CRISPR-associated protein Cas6/Cmx6
COORDINATES: protein motif:HMM:NF033591.1
GO:0004803 - transposase activity [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:TIGR03434.1
COORDINATES: similar to AA sequence:RefSeq:WP_015897578.1
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012374721.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: protein motif:HMM:NF039575.1
COORDINATES: protein motif:HMM:NF021593.2
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:NF023149.2
GO:0030246 - carbohydrate binding [Evidence IEA]
malectin domain-containing carbohydrate-binding protein
COORDINATES: protein motif:HMM:NF018449.2
COORDINATES: similar to AA sequence:RefSeq:WP_011433655.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_017285511.1
COORDINATES: similar to AA sequence:RefSeq:WP_013034320.1
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:TIGR03158.1
GO:0004386 - helicase activity [Evidence IEA]
type I-D CRISPR-associated helicase Cas3'
COORDINATES: similar to AA sequence:RefSeq:WP_011458673.1
COORDINATES: nucleotide motif:Rfam:14.4:RF02276
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012362368.1
COORDINATES: similar to AA sequence:RefSeq:WP_020095741.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219840.1