Alosa alosa mitochondrion, complete genome.
type: Entry
definition: Alosa alosa mitochondrion, complete genome.
sequence version: NC_009575.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_009575.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Alosa alosa (allis shad)
organism: Alosa alosa
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa.
reference: 1
references: 17123838
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AP009131.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16698
topology: circular
so has quality: SO_0000988
location: 1..16698
location: region:1-16698:1
RO_0002162: 278164

NC_009575
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences
author: Lavoue, S.
author: Miya, M.
author: Saitoh, K.
author: Ishiguro, N.B.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 43
issue: 3
pages: 1096-1105
year: 2007
pubmed: 17123838

17123838
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (19-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Lavoue, S.
journal: Submitted (21-FEB-2006) Ocean Research Institute, Univ. of Tokyo, Department of Marine Bioscience; 1-15-1 Minamidai, Nakano-ku, Tokyo 164-8639, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16698:1
position: 16698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16698:1:source
so part of: sequence
organism: Alosa alosa
organelle: mitochondrion
mol type: genomic DNA

278164
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 278164
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1020
location: region:70-1020:1
so has part: feature:70-1020:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1020:1
position: 1020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1020:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Val
so part of: sequence
location: 1021..1092
location: region:1021-1092:1
so has part: feature:1021-1092:1:region

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1092:1
position: 1092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1021-1092:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 278164
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1093..2776
location: region:1093-2776:1
so has part: feature:1093-2776:1:region

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2776:1
position: 2776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1093-2776:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2777..2853
location: region:2777-2853:1
so has part: feature:2777-2853:1:region

position:2777:1
position: 2777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2853:1
position: 2853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2777-2853:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND1
so part of: sequence
location: 2854..3828
location: region:2854-3828:1
so has part: feature:2854-3828:1:exon
subclass of: SO_0000010

5228803
type: Gene
SIO_000068: ncbigene

position:2854:1
position: 2854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3828:1
position: 3828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2854-3828:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLHIIMAHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPLPLPFPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLCTIVFTGGFTLSMFSITQEGIWLLAPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAVLFMGASHFPSFPEFTTISIMFKAALLSGLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHISLPVGTAGLPPQF
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2854..3828
location: region:2854-3828:1
so has part: feature:2854-3828:1:exon

YP_001293632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2854-3828:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Ile
so part of: sequence
location: 3837..3908
location: region:3837-3908:1
so has part: feature:3837-3908:1:region

position:3837:1
position: 3837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3908:1
position: 3908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3837-3908:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Gln
so part of: sequence
location: complement(3908..3978)
location: region:3908-3978:-1
so has part: feature:3908-3978:-1:region

position:3908:-1
position: 3908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3978:-1
position: 3978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3908-3978:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Met
so part of: sequence
location: 3978..4046
location: region:3978-4046:1
so has part: feature:3978-4046:1:region

position:3978:1
position: 3978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4046:1
position: 4046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3978-4046:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND2
so part of: sequence
location: 4047..5091
location: region:4047-5091:1
so has part: feature:4047-5091:1:exon
subclass of: SO_0000010

5228805
type: Gene
SIO_000068: ncbigene

position:4047:1
position: 4047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5091:1
position: 5091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4047-5091:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5091,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLTILLSSLGLGTTMTFASSHWLLAWMGLEINTLAIVPMMAYQHHPRAVEATTKYFLTQATAAAMLLFASTTNAWITGQWEITQLSHPIASSIAITALALKIGLAPMHFWLPEVLQGITLTTGLVLSTWQKLAPFALILQIADNAHPYLLTTLAISSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVAQMAPQMTLMALVTYIAMTTAAFLTLNNVGSTKTITLTSAWTKAPTLTALACLILLSLGGLPPLTGFMPKWLILQEVSSQXFPLTATVMALTALLSLYFYLRLSYAMTLTLSPYTTNSTAPWRTTTKQPSLPLSAAIISSTSLLPLTPTALALLA
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4047..5091
location: region:4047-5091:1
so has part: feature:4047-5091:1:exon

YP_001293633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4047-5091:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Trp
so part of: sequence
location: 5092..5163
location: region:5092-5163:1
so has part: feature:5092-5163:1:region

position:5092:1
position: 5092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5163:1
position: 5163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5092-5163:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Ala
so part of: sequence
location: complement(5165..5233)
location: region:5165-5233:-1
so has part: feature:5165-5233:-1:region

position:5165:-1
position: 5165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5233:-1
position: 5233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5165-5233:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Asn
so part of: sequence
location: complement(5234..5307)
location: region:5234-5307:-1
so has part: feature:5234-5307:-1:region

position:5234:-1
position: 5234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5307:-1
position: 5307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5234-5307:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Cys
so part of: sequence
location: complement(5340..5405)
location: region:5340-5405:-1
so has part: feature:5340-5405:-1:region

position:5340:-1
position: 5340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5405:-1
position: 5405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5340-5405:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Tyr
so part of: sequence
location: complement(5408..5478)
location: region:5408-5478:-1
so has part: feature:5408-5478:-1:region

position:5408:-1
position: 5408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5478:-1
position: 5478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5408-5478:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: COX1
so part of: sequence
location: 5480..7030
location: region:5480-7030:1
so has part: feature:5480-7030:1:exon
subclass of: SO_0000010

5228800
type: Gene
SIO_000068: ncbigene

position:5480:1
position: 5480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7030:1
position: 7030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5480-7030:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWDTPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFMHWFPLFSGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVSSVELTMTNVEWLHGCPPPYHTFEEPAFVQVQAK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5480..7030
location: region:5480-7030:1
so has part: feature:5480-7030:1:exon

YP_001293634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5480-7030:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7031..7101)
location: region:7031-7101:-1
so has part: feature:7031-7101:-1:region

position:7031:-1
position: 7031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7101:-1
position: 7101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7031-7101:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Asp
so part of: sequence
location: 7106..7174
location: region:7106-7174:1
so has part: feature:7106-7174:1:region

position:7106:1
position: 7106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7174:1
position: 7174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7106-7174:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: COX2
so part of: sequence
location: 7187..7877
location: region:7187-7877:1
so has part: feature:7187-7877:1:exon
subclass of: SO_0000010

5228808
type: Gene
SIO_000068: ncbigene

position:7187:1
position: 7187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7877:1
position: 7877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7187-7877:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7877,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGLQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVSMVSTKLTDKYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPMESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7187..7877
location: region:7187-7877:1
so has part: feature:7187-7877:1:exon

YP_001293635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7187-7877:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Lys
so part of: sequence
location: 7878..7951
location: region:7878-7951:1
so has part: feature:7878-7951:1:region

position:7878:1
position: 7878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7951:1
position: 7951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7878-7951:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ATP8
so part of: sequence
location: 7953..8120
location: region:7953-8120:1
so has part: feature:7953-8120:1:exon
subclass of: SO_0000010

5228807
type: Gene
SIO_000068: ncbigene

position:7953:1
position: 7953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8120:1
position: 8120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8120:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLIFLTVIPPKVLAHNFNNEPTTVGAEKAKPEPWNWPWY
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7953..8120
location: region:7953-8120:1
so has part: feature:7953-8120:1:exon

YP_001293636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8120:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ATP6
so part of: sequence
location: 8111..8793
location: region:8111-8793:1
so has part: feature:8111-8793:1:exon
subclass of: SO_0000010

5228802
type: Gene
SIO_000068: ncbigene

position:8111:1
position: 8111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8111-8793:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8792..8793,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMLSFFDQFMSPSYLGIPLIAVAIALPWVLYPTPTTRWLNNRVLTLQGWFINRFTQQLLLPINPGGHKWAVLFTSLMLFLITINMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPAPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPIMPTVAILTATILFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8111..8793
location: region:8111-8793:1
so has part: feature:8111-8793:1:exon

YP_001293637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8111-8793:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: COX3
so part of: sequence
location: 8794..9578
location: region:8794-9578:1
so has part: feature:8794-9578:1:exon
subclass of: SO_0000010

5228804
type: Gene
SIO_000068: ncbigene

position:8794:1
position: 8794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8794-9578:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9577..9578,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVGALLLTSGTAIWFHFHSTLLMTLGLVLTLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGVTPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGGRKQAIQSLTLTILLGFYFTFLQALEYYEAPFTIADGVFGSTFFVATGFHGLHVIIGSTFLAVCLLRQVLHHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8794..9578
location: region:8794-9578:1
so has part: feature:8794-9578:1:exon

YP_001293638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8794-9578:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Gly
so part of: sequence
location: 9579..9650
location: region:9579-9650:1
so has part: feature:9579-9650:1:region

position:9579:1
position: 9579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9650:1
position: 9650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9579-9650:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND3
so part of: sequence
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon
subclass of: SO_0000010

5228810
type: Gene
SIO_000068: ncbigene

position:9651:1
position: 9651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9999:1
position: 9999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9999,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MSLIMTILAITSVLSIILIIVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGNQLLNPLVTVSWATAILVLLTLGLVYEWMQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon

YP_001293639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Arg
so part of: sequence
location: 10000..10069
location: region:10000-10069:1
so has part: feature:10000-10069:1:region

position:10000:1
position: 10000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10069:1
position: 10069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10000-10069:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND4L
so part of: sequence
location: 10070..10366
location: region:10070-10366:1
so has part: feature:10070-10366:1:exon
subclass of: SO_0000010

5228809
type: Gene
SIO_000068: ncbigene

position:10070:1
position: 10070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10366:1
position: 10366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10070-10366:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFSMAFILGLMGLAFHRTHLLSALLCLEGMMLSLFLALSLWTLQTEATNFSAAPMLLLAFSACEASTGLALLVATARTHGTDRLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10070..10366
location: region:10070-10366:1
so has part: feature:10070-10366:1:exon

YP_001293640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10070-10366:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND4
so part of: sequence
location: 10360..11740
location: region:10360-11740:1
so has part: feature:10360-11740:1:exon
subclass of: SO_0000010

5228801
type: Gene
SIO_000068: ncbigene

position:10360:1
position: 10360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11740:1
position: 11740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10360-11740:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11740,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTLMLFPTIWLTPKKWLWTSAVSYSLVIALLSLTWLNWTAETGWTLPNNYMAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQAFLIMAFGATEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSTGSLSMITLNFCQPLTLISWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMIRMTTVLDPLTKEMAYPFIVLALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQMLFPLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGLGTLITAGYSLYMFLMTQRGPVPAHITGLTPYHTREHLLIALHLIPVVLLVLKPEFVWGWFY
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10360..11740
location: region:10360-11740:1
so has part: feature:10360-11740:1:exon

YP_001293641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10360-11740:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-His
so part of: sequence
location: 11741..11809
location: region:11741-11809:1
so has part: feature:11741-11809:1:region

position:11741:1
position: 11741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11809:1
position: 11809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11741-11809:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11810..11876
location: region:11810-11876:1
so has part: feature:11810-11876:1:region

position:11810:1
position: 11810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11876:1
position: 11876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11810-11876:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11877..11948
location: region:11877-11948:1
so has part: feature:11877-11948:1:region

position:11877:1
position: 11877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11948:1
position: 11948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11877-11948:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND5
so part of: sequence
location: 11949..13784
location: region:11949-13784:1
so has part: feature:11949-13784:1:exon
subclass of: SO_0000010

5228806
type: Gene
SIO_000068: ncbigene

position:11949:1
position: 11949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13784:1
position: 13784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11949-13784:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MQTTLILSSSLTLIFALLAYPIITTIDPAPKPPGWAVSHVKTAVSAAFVVSLLPLFIFLDQGVETIVTTWHWMNTSTFNISISLKFDAYSIIFTPIALYVTWSILEFASWYMHADPYMNRFFKYLLMFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLIMSMAWFAMNLNSWEMQQIFALSHNMDMTLPLLGLIIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLTQANPTALTICLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSVIHSLNDEQDIRKMGGLHNLAPFTSTCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALVLTLIATSFTAVYSFRVVFFVTMGTPRFMPLSPINENDPAVINPIKRLAWGSIVAGLILISNTLPTKTPIMTMPPMLKLAALIVTVIGLLTAMELAALTAKQFKPTPTIKLHNFSNMLGFFPATVHRLAPKLNLVLGQTMANQLVDQSWFETAGPKGLVSAQTKMSAATSDTQRGIIKTYLMIFMITTGLAALLASA
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11949..13784
location: region:11949-13784:1
so has part: feature:11949-13784:1:exon

YP_001293642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11949-13784:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: ND6
so part of: sequence
location: complement(13781..14302)
location: region:13781-14302:-1
so has part: feature:13781-14302:-1:exon
subclass of: SO_0000010

5228798
type: Gene
SIO_000068: ncbigene

position:13781:-1
position: 13781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14302:-1
position: 14302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13781-14302:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MVYFVCLWLFGFVLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGLPFLALALFLIYLGGMLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVVAGLLYFGSSWYGFSTGVLSSCKELLMIRGDVGGVSMLYASGGVMMVLCAWVLLLTLFVVLELTRGLSRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13781..14302)
location: region:13781-14302:-1
so has part: feature:13781-14302:-1:exon

YP_001293643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13781-14302:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Glu
so part of: sequence
location: complement(14303..14371)
location: region:14303-14371:-1
so has part: feature:14303-14371:-1:region

position:14303:-1
position: 14303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14371:-1
position: 14371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14303-14371:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 278164
gene: CYTB
so part of: sequence
location: 14376..15516
location: region:14376-15516:1
so has part: feature:14376-15516:1:exon
subclass of: SO_0000010

5228799
type: Gene
SIO_000068: ncbigene

position:14376:1
position: 14376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15516:1
position: 15516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14376-15516:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 278164
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15516,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAHIGRGLYYGSYVYKETWTIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGALVEWIWGGFSVDSATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKILFHPYFSYKDLLGFAALLLALISLALFSPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVIPTLHTSKHRGLTFRPITQFLFWALVLDVVVLTWIGGMPVEHPYVIAGQVASAAYFSLFLILTPLAGWAENKVLEWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14376..15516
location: region:14376-15516:1
so has part: feature:14376-15516:1:exon

YP_001293644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14376-15516:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Thr
so part of: sequence
location: 15517..15588
location: region:15517-15588:1
so has part: feature:15517-15588:1:region

position:15517:1
position: 15517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15588:1
position: 15588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15517-15588:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 278164
product: tRNA-Pro
so part of: sequence
location: complement(15588..15657)
location: region:15588-15657:-1
so has part: feature:15588-15657:-1:region

position:15588:-1
position: 15588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15657:-1
position: 15657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15588-15657:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 278164
note: control region
so part of: sequence
location: 15658..16698
location: region:15658-16698:1
so has part: feature:15658-16698:1:region

position:15658:1
position: 15658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15658-16698:1:region