Mesorhizobium ciceri biovar biserrulae strain WSM1284 plasmid pMc1284, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Mesorhizobium.
Complete Genome Sequence of Mesorhizobium ciceri bv. biserrulae Strain WSM1284, an Efficient Nitrogen-Fixing Microsymbiont of the Pasture Legume Biserrula pelecinus
Submitted (31-MAR-2016) Centre for Rhizobium Studies, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP015065.1.\nBacteria available from Centre for Rhizobium Studies, Murdoch\nUniversity, South Street, Murdoch 6150, Perth, Australia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Spades v. 3.6.2; SSpace v. 3.0\nGenome Coverage :: 100x; 30x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 14:48:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,597\nCDSs (total) :: 6,535\nGenes (coding) :: 6,408\nCDSs (with protein) :: 6,408\nGenes (RNA) :: 62\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 84 of 127\nPseudo Genes (incomplete) :: 79 of 127\nPseudo Genes (internal stop) :: 15 of 127\nPseudo Genes (multiple problems) :: 42 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010909497.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: similar to AA sequence:RefSeq:WP_010309406.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858140.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076948.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010914245.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004434271.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013525370.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010916247.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525368.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916249.1
protein-glutamate O-methyltransferase CheR
COORDINATES: similar to AA sequence:RefSeq:WP_013525366.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525365.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013525364.1
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: similar to AA sequence:RefSeq:WP_020184726.1
PleD family two-component system response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013525362.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525361.1
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020487509.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525359.1
winged helix-turn-helix domain-containing tetratricopeptide repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_018237089.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_003526363.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850380.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525354.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018011942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237097.1
COORDINATES: similar to AA sequence:RefSeq:WP_017959094.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013525351.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860252.1
COORDINATES: protein motif:HMM:NF025030.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013525348.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
YaiO family outer membrane beta-barrel protein
COORDINATES: similar to AA sequence:RefSeq:WP_019860258.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525346.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525345.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525344.1
COORDINATES: protein motif:HMM:NF015831.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525342.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008873878.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525339.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525338.1
GO:0015474 - autotransporter activity [Evidence IEA]
GO:0046819 - protein secretion by the type V secretion system [Evidence IEA]
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012537156.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_008872104.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525336.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982997.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008874190.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528951.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011058702.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: similar to AA sequence:RefSeq:WP_013168346.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011389052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014322063.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749287.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_008960329.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008758406.1
COORDINATES: similar to AA sequence:RefSeq:WP_011580843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859138.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859289.1
COORDINATES: similar to AA sequence:RefSeq:WP_011090405.1
COORDINATES: similar to AA sequence:RefSeq:WP_016845352.1
COORDINATES: similar to AA sequence:RefSeq:WP_018321984.1
COORDINATES: similar to AA sequence:RefSeq:WP_018321983.1
COORDINATES: similar to AA sequence:RefSeq:WP_014492566.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099089.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008108096.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004531333.1
COORDINATES: similar to AA sequence:RefSeq:WP_009811142.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_012234605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200010.1
COORDINATES: similar to AA sequence:RefSeq:WP_008994654.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF016084.2
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_006997056.1
COORDINATES: similar to AA sequence:RefSeq:WP_012838777.1
GO:0008442 - 3-hydroxyisobutyrate dehydrogenase activity [Evidence IEA]
GO:0006574 - valine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019198540.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019404716.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: similar to AA sequence:RefSeq:WP_020071358.1
COORDINATES: similar to AA sequence:RefSeq:WP_008018026.1
N-acyl homoserine lactonase family protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014376274.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019856597.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF028352.2
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976850.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019856594.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178127.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493406.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019017849.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014251770.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575527.1
DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_011665439.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003523553.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672124.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019863965.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916139.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873509.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_008873507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873506.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006339606.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878426.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339603.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916134.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878418.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339593.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525327.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525326.1
COORDINATES: protein motif:HMM:NF015297.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010154067.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525323.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525322.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525321.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525320.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_013525319.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525317.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525316.1
COORDINATES: similar to AA sequence:RefSeq:WP_019864070.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525313.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735310.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019859786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008875172.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014763594.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008875170.1
Hcp family type VI secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_006329706.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_006204796.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_008875167.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_013525303.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_013525302.1
type VI secretion system lipoprotein TssJ
COORDINATES: similar to AA sequence:RefSeq:WP_006204791.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_013525300.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_006204789.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:NF021393.2
type VI secretion system-associated protein TagF
COORDINATES: protein motif:HMM:NF025047.2
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: similar to AA sequence:RefSeq:WP_016735328.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525290.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_013525289.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525288.1
type VI secretion system protein TssL, long form
COORDINATES: similar to AA sequence:RefSeq:WP_006329670.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206734.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525285.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008875146.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329663.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206729.1
COORDINATES: similar to AA sequence:RefSeq:WP_008875141.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525280.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859817.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525278.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525276.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894904.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525274.1
COORDINATES: protein motif:HMM:NF013412.2
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525230.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004545807.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005857070.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019091792.1
COORDINATES: similar to AA sequence:RefSeq:WP_018429162.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015315327.1
COORDINATES: similar to AA sequence:RefSeq:WP_010910563.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915245.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010910559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428022.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012402.2
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010967916.1
COORDINATES: similar to AA sequence:RefSeq:WP_019171848.1
COORDINATES: similar to AA sequence:RefSeq:WP_018041158.1
COORDINATES: similar to AA sequence:RefSeq:WP_020056846.1
COORDINATES: similar to AA sequence:RefSeq:WP_007197944.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034231.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525257.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525255.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525254.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_013525253.1
cytochrome (ubi)quinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_013895480.1
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_013525251.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525250.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525249.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068137.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013525247.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525246.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533304.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533303.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525244.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525243.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525239.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533296.1
COORDINATES: protein motif:HMM:NF017638.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525312.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525233.1
COORDINATES: similar to AA sequence:RefSeq:WP_018042949.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915369.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525225.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525224.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525223.1
D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525221.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099044.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003526315.1
catalyzes the formation of L-proline from L-ornithine; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006020560.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896601.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909796.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013896603.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013896604.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013896605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896606.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896607.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337717.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315949.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896612.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896613.1
COORDINATES: similar to AA sequence:RefSeq:WP_019857366.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896615.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736319.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896618.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047118.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896621.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896622.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896623.1
COORDINATES: similar to AA sequence:RefSeq:WP_003528482.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517466.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013637183.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931371.1
COORDINATES: similar to AA sequence:RefSeq:WP_008492831.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856623.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856622.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014132169.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019856620.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856619.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019856618.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856617.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856616.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204247.1
GO:0004462 - lactoylglutathione lyase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0051596 - methylglyoxal catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019856613.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856612.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856608.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856607.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856606.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856605.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592600.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_006204238.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856602.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204236.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316614.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316613.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525208.1
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015316611.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525206.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316609.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316608.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525203.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548363.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525200.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525199.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011560906.1
COORDINATES: similar to AA sequence:RefSeq:WP_040609789.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525065.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558787.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525194.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525193.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525192.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525191.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016735745.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428506.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590905.1
COORDINATES: protein motif:HMM:TIGR01727.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525147.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525145.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525144.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013525143.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525142.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013895468.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015317835.1
COORDINATES: similar to AA sequence:RefSeq:WP_018322014.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525138.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895464.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895463.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316435.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525134.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316433.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316430.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337486.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525129.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337092.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525124.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316416.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013525122.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525120.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316406.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525117.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525116.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525115.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525114.1
COORDINATES: similar to AA sequence:RefSeq:WP_013897221.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525110.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525109.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525107.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672120.1
COORDINATES: protein motif:HMM:NF033788.1
COORDINATES: similar to AA sequence:RefSeq:WP_013531386.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525103.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525102.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874589.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525100.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525098.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_013532439.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763007.1
COORDINATES: similar to AA sequence:RefSeq:WP_006133822.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF017050.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525089.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525088.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525086.1
COORDINATES: similar to AA sequence:RefSeq:WP_020179211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525083.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836723.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525081.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525079.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013895435.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525077.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525076.1
COORDINATES: similar to AA sequence:RefSeq:WP_018269119.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008872290.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200546.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010915377.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010915376.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF019149.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525069.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525068.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525067.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013525066.1
COORDINATES: similar to AA sequence:RefSeq:WP_013531388.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525061.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525060.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916239.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525029.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840313.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525053.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525049.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525048.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525037.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010910614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428575.1
COORDINATES: similar to AA sequence:RefSeq:WP_013531174.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525034.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525031.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525028.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576782.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525026.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525024.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749414.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525022.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525021.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525020.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525019.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909373.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515880.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649494.1
spore coat protein U domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525016.1
fimbria/pilus outer membrane usher protein
COORDINATES: similar to AA sequence:RefSeq:WP_013525015.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915075.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525013.1
COORDINATES: protein motif:HMM:NF013304.2
COORDINATES: protein motif:HMM:NF021538.2
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: similar to AA sequence:RefSeq:WP_009030177.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316583.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894494.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: similar to AA sequence:RefSeq:WP_015314743.1
pilus assembly protein TadG-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_003551120.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859180.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859179.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858514.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012061726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006330896.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527318.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887440.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887439.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019566370.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331827.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014331828.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838892.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243175.1
COORDINATES: similar to AA sequence:RefSeq:WP_006609866.1
COORDINATES: similar to AA sequence:RefSeq:WP_019196527.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: similar to AA sequence:RefSeq:WP_014331809.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_008831592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017268439.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838880.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838879.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838878.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008838876.1
COORDINATES: protein motif:HMM:NF014732.2
COORDINATES: similar to AA sequence:RefSeq:WP_015887486.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013894097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909503.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858150.1
peptidase domain-containing ABC transporter