Tenacibaculum finnmarkense strain LI C6 FM3-F plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
Genomics of Tenacibaculum species in British Columbia, Canada
Submitted (05-JAN-2023) Center for Innovation in Fish Health, Vancouver Island University, 900 Fifth St, Nanaimo, British Columbia V9R 5S5, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP116296.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Trycycler v. 0.5.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 456.8x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/27/2023 07:52:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,687\nCDSs (total) :: 2,599\nGenes (coding) :: 2,522\nCDSs (with protein) :: 2,522\nGenes (RNA) :: 88\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 68 of 77\nPseudo Genes (incomplete) :: 8 of 77\nPseudo Genes (internal stop) :: 5 of 77\nPseudo Genes (multiple problems) :: 3 of 77\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008462957.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004357856.1
type VI secretion system tube protein TssD
COORDINATES: protein motif:HMM:NF017739.2
COORDINATES: protein motif:HMM:NF025472.2
COORDINATES: similar to AA sequence:RefSeq:WP_015022725.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF026942.2
polymorphic toxin type 15 domain-containing protein
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF017411.2
COORDINATES: protein motif:HMM:NF025769.2
COORDINATES: protein motif:HMM:NF025789.2
COORDINATES: protein motif:HMM:NF025581.2
COORDINATES: protein motif:HMM:NF040127.1
COORDINATES: protein motif:HMM:NF026900.2
COORDINATES: protein motif:HMM:NF039534.1
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF024982.2
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: protein motif:HMM:TIGR03781.1
COORDINATES: protein motif:HMM:TIGR03783.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: protein motif:HMM:NF024961.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF020425.2
COORDINATES: protein motif:HMM:NF020329.2
COORDINATES: protein motif:HMM:NF033441.0
COORDINATES: protein motif:HMM:NF033452.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
BREX-1 system adenine-specific DNA-methyltransferase PglX
COORDINATES: protein motif:HMM:TIGR02687.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012929330.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
BREX system Lon protease-like protein BrxL
COORDINATES: protein motif:HMM:NF033564.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019997.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_010230181.1
COORDINATES: similar to AA sequence:RefSeq:WP_015022704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006987065.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: protein motif:HMM:NF037603.2
COORDINATES: similar to AA sequence:RefSeq:WP_005642309.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010664838.1
type II toxin-antitoxin system MqsR family toxin
COORDINATES: protein motif:HMM:NF024671.2
COORDINATES: similar to AA sequence:RefSeq:WP_002658994.1
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_020570670.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611659.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004356174.1
COORDINATES: similar to AA sequence:RefSeq:WP_017496374.1
COORDINATES: similar to AA sequence:RefSeq:WP_009293433.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_014085223.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF036941.2
TssN family type VI secretion system protein
COORDINATES: protein motif:HMM:NF036668.2
COORDINATES: similar to AA sequence:RefSeq:WP_007761345.1
COORDINATES: protein motif:HMM:NF036394.2
COORDINATES: protein motif:HMM:NF036662.2
COORDINATES: similar to AA sequence:RefSeq:WP_004384141.1
COORDINATES: similar to AA sequence:RefSeq:WP_007809514.1
COORDINATES: protein motif:HMM:NF022602.2