Dermochelys coriacea isolate rDerCor1 chromosome 21, rDerCor1.pri.v4, whole genome shotgun sequence.
type: Entry
definition: Dermochelys coriacea isolate rDerCor1 chromosome 21, rDerCor1.pri.v4, whole genome shotgun sequence.
sequence version: NC_050088.1
sequence date: 2021-09-10
sequence: sequence
division: CON
label: NC_050088.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA655518
dblink: SAMN12629498
keyword: WGS
keyword: RefSeq
source: Dermochelys coriacea (leatherback sea turtle)
organism: Dermochelys coriacea
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM019955.3.\nAssembly name: rDerCor1.pri.v4\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the G10K on 2021/08/25. The\noriginal whole-genome shotgun project has the accession\nWSPL00000000.4.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: G10K\nAssembly Date :: 24-MAY-2021\nAssembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip\n DNANexus v. 1.0.6; purge_dups v. v1;\n scaff10x v. 4.1.0; Bionano Solve DLS v.\n 3.2.1; Salsa HiC v. 2.2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. 6.0.0.47841; longranger align\n v. 2.2.2; freebayes Illumina polishing v.\n 1.3.1; gEVAL manual curation v.\n 2021-05-24; VGP assembly pipeline\n individual v. 1.6\nAssembly Name :: rDerCor1.pri.v4\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 63.68x\nSequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Dermochelys coriacea Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 18859425
topology: linear
so has quality: SO_0000987
location: 1..18859425
location: region:1-18859425:1
RO_0002162: 27794

NC_050088
type: RefSeq
SIO_000068: refseq

PRJNA655518
type: BioProject
SIO_000068: bioproject

SAMN12629498
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18859425:1
position: 18859425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18859425:1:source
so part of: sequence
organism: Dermochelys coriacea
mol type: genomic DNA
isolate: rDerCor1
chromosome: 21
sex: male
tissue type: blood
dev stage: adult
country: USA: Half Moon Bay, California
lat lon: 37.46311 N 122.4293 W
collection date: 26-Sep-2017
collected by: Lisa Komoroske

27794
type: Taxonomy
SIO_000068: taxonomy

LOC119846452
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846452
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2322..5875)
location: region:2322-5875:-1
so has part: feature:2322-5875:-1:exon
subclass of: SO_0000011

119846452
type: Gene
SIO_000068: ncbigene

position:2322:-1
position: 2322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5875:-1
position: 5875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2322-5875:-1:exon

LOC119846452
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846452
product: uncharacterized LOC119846452, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276506.1
SIO_010081: LOC119846452
subclass of: SO_0000673
so part of: LOC119846452
location: complement(join(2322..3278,3466..3771,3955..4080,4419..4474,4930..5875))
location: region:2322-5875:-1
so has part: feature:4930-5875:-1:exon
so has part: feature:4419-4474:-1:exon
so has part: feature:3955-4080:-1:exon
so has part: feature:3466-3771:-1:exon
so has part: feature:2322-3278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4930-5875:-1:exon

position:4930:-1
position: 4930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4419-4474:-1:exon

position:4419:-1
position: 4419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4474:-1
position: 4474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3955-4080:-1:exon

position:3955:-1
position: 3955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4080:-1
position: 4080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3466-3771:-1:exon

position:3466:-1
position: 3466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3771:-1
position: 3771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2322-3278:-1:exon

position:3278:-1
position: 3278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846452
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846452
product: uncharacterized LOC119846452, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276505.1
SIO_010081: LOC119846452
subclass of: SO_0000673
so part of: LOC119846452
location: complement(join(2322..3278,3479..4080,4419..4474,4930..5875))
location: region:2322-5875:-1
so has part: feature:4930-5875:-1:exon
so has part: feature:4419-4474:-1:exon
so has part: feature:3479-4080:-1:exon
so has part: feature:2322-3278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4930-5875:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4419-4474:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3479-4080:-1:exon

position:3479:-1
position: 3479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2322-3278:-1:exon

LOC119846452
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846452
product: uncharacterized LOC119846452, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276504.1
SIO_010081: LOC119846452
subclass of: SO_0000673
so part of: LOC119846452
location: complement(join(2322..3278,3466..4080,4419..4474,4930..5875))
location: region:2322-5875:-1
so has part: feature:4930-5875:-1:exon
so has part: feature:4419-4474:-1:exon
so has part: feature:3466-4080:-1:exon
so has part: feature:2322-3278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4930-5875:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4419-4474:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3466-4080:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2322-3278:-1:exon

LOC122457162
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457162
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(20825..22041)
location: region:20825-22041:-1
so has part: feature:20825-22041:-1:exon
subclass of: SO_0000011

122457162
type: Gene
SIO_000068: ncbigene

position:20825:-1
position: 20825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22041:-1
position: 22041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20825-22041:-1:exon

LOC122457162
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457162
product: uncharacterized LOC122457162
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276549.1
SIO_010081: LOC122457162
subclass of: SO_0000673
so part of: LOC122457162
location: complement(join(20825..21542,21996..22041))
location: region:20825-22041:-1
so has part: feature:21996-22041:-1:exon
so has part: feature:20825-21542:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21996-22041:-1:exon

position:21996:-1
position: 21996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20825-21542:-1:exon

position:21542:-1
position: 21542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122457160
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(23249..24666)
location: region:23249-24666:-1
so has part: feature:23249-24666:-1:exon
subclass of: SO_0000011

122457160
type: Gene
SIO_000068: ncbigene

position:23249:-1
position: 23249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24666:-1
position: 24666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23249-24666:-1:exon

LOC122457160
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457160
product: uncharacterized LOC122457160, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transcript id: XR_006276546.1
SIO_010081: LOC122457160
subclass of: SO_0000673
so part of: LOC122457160
location: complement(join(23249..23799,24109..24228,24609..24666))
location: region:23249-24666:-1
so has part: feature:24609-24666:-1:exon
so has part: feature:24109-24228:-1:exon
so has part: feature:23249-23799:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24609-24666:-1:exon

position:24609:-1
position: 24609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24109-24228:-1:exon

position:24109:-1
position: 24109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24228:-1
position: 24228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:23249-23799:-1:exon

position:23799:-1
position: 23799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122457160
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457160
product: uncharacterized LOC122457160, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XR_006276547.1
SIO_010081: LOC122457160
subclass of: SO_0000673
so part of: LOC122457160
location: complement(join(23249..23799,24098..24228,24609..24666))
location: region:23249-24666:-1
so has part: feature:24609-24666:-1:exon
so has part: feature:24098-24228:-1:exon
so has part: feature:23249-23799:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24609-24666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:24098-24228:-1:exon

position:24098:-1
position: 24098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:23249-23799:-1:exon

LOC119846229
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(24791..93237)
location: region:24791-93237:-1
so has part: feature:24791-93237:-1:exon

119846229
type: Gene
SIO_000068: ncbigene

position:24791:-1
position: 24791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93237:-1
position: 93237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24791-93237:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(24791..24925)
location: region:24791-24925:-1
so has part: feature:24791-24925:-1:exon

position:24925:-1
position: 24925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24791-24925:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(25236..25362)
location: region:25236-25362:-1
so has part: feature:25236-25362:-1:exon

position:25236:-1
position: 25236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25362:-1
position: 25362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25236-25362:-1:exon

LOC122457164
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457164
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 31145..46791
location: region:31145-46791:1
so has part: feature:31145-46791:1:exon
subclass of: SO_0000011

122457164
type: Gene
SIO_000068: ncbigene

position:31145:1
position: 31145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46791:1
position: 46791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31145-46791:1:exon

LOC122457164
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457164
product: uncharacterized LOC122457164
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_006276551.1
SIO_010081: LOC122457164
subclass of: SO_0000673
so part of: LOC122457164
location: join(31145..31294,32034..32038,46751..46791)
location: region:31145-46791:1
so has part: feature:31145-31294:1:exon
so has part: feature:32034-32038:1:exon
so has part: feature:46751-46791:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31145-31294:1:exon

position:31294:1
position: 31294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32034-32038:1:exon

position:32034:1
position: 32034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32038:1
position: 32038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:46751-46791:1:exon

position:46751:1
position: 46751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(34748..35435)
location: region:34748-35435:-1
so has part: feature:34748-35435:-1:exon

position:34748:-1
position: 34748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35435:-1
position: 35435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34748-35435:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(35486..35630)
location: region:35486-35630:-1
so has part: feature:35486-35630:-1:exon

position:35486:-1
position: 35486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35630:-1
position: 35630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35486-35630:-1:exon

LOC119846469
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(36101..130144)
location: region:36101-130144:-1
so has part: feature:36101-130144:-1:exon
subclass of: SO_0000010

119846469
type: Gene
SIO_000068: ncbigene

position:36101:-1
position: 36101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130144:-1
position: 130144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36101-130144:-1:exon

LOC119846469
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: LOC119846469
product: zinc finger protein 2-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_006276545.1
SIO_010081: LOC119846469
so part of: LOC119846469
location: complement(join(36101..36243,36669..36782,38813..39240))
location: region:36101-39240:-1
so has part: feature:38813-39240:-1:exon
so has part: feature:36669-36782:-1:exon
so has part: feature:36101-36243:-1:exon

position:39240:-1
position: 39240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38813-39240:-1:exon

position:38813:-1
position: 38813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36669-36782:-1:exon

position:36669:-1
position: 36669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36782:-1
position: 36782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36101-36243:-1:exon

position:36243:-1
position: 36243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846469
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: LOC119846469
product: zinc finger protein 2-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_006276544.1
SIO_010081: LOC119846469
so part of: LOC119846469
location: complement(join(36103..36240,36669..36782,38813..39240))
location: region:36103-39240:-1
so has part: feature:38813-39240:-1:exon
so has part: feature:36669-36782:-1:exon
so has part: feature:36103-36240:-1:exon

position:36103:-1
position: 36103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38813-39240:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36669-36782:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:36103-36240:-1:exon

position:36240:-1
position: 36240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846469
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: LOC119846469
product: zinc finger protein 2-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276543.1
SIO_010081: LOC119846469
so part of: LOC119846469
location: complement(join(36521..36782,38730..39240))
location: region:36521-39240:-1
so has part: feature:38730-39240:-1:exon
so has part: feature:36521-36782:-1:exon

position:36521:-1
position: 36521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38730-39240:-1:exon

position:38730:-1
position: 38730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36521-36782:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(67035..68267)
location: region:67035-68267:-1
so has part: feature:67035-68267:-1:exon

position:67035:-1
position: 67035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68267:-1
position: 68267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67035-68267:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(68619..68732)
location: region:68619-68732:-1
so has part: feature:68619-68732:-1:exon

position:68619:-1
position: 68619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68732:-1
position: 68732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68619-68732:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(76433..76559)
location: region:76433-76559:-1
so has part: feature:76433-76559:-1:exon

position:76433:-1
position: 76433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76559:-1
position: 76559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76433-76559:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(77243..77310)
location: region:77243-77310:-1
so has part: feature:77243-77310:-1:exon

position:77243:-1
position: 77243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77310:-1
position: 77310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77243-77310:-1:exon

LOC122457163
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 91596..104841
location: region:91596-104841:1
so has part: feature:91596-104841:1:exon
subclass of: SO_0000011

122457163
type: Gene
SIO_000068: ncbigene

position:91596:1
position: 91596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104841:1
position: 104841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91596-104841:1:exon

LOC122457163
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457163
product: uncharacterized LOC122457163
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276550.1
SIO_010081: LOC122457163
subclass of: SO_0000673
so part of: LOC122457163
location: join(91596..91606,94021..94025,104401..104841)
location: region:91596-104841:1
so has part: feature:91596-91606:1:exon
so has part: feature:94021-94025:1:exon
so has part: feature:104401-104841:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:91596-91606:1:exon

position:91606:1
position: 91606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:94021-94025:1:exon

position:94021:1
position: 94021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94025:1
position: 94025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:104401-104841:1:exon

position:104401:1
position: 104401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(92828..92943)
location: region:92828-92943:-1
so has part: feature:92828-92943:-1:exon

position:92828:-1
position: 92828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92943:-1
position: 92943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92828-92943:-1:exon

LOC119846229
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846229
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119846229
subclass of: SO_0000673
so part of: LOC119846229
location: complement(93179..93237)
location: region:93179-93237:-1
so has part: feature:93179-93237:-1:exon

position:93179:-1
position: 93179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93179-93237:-1:exon

LOC122457161
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457161
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(97325..127201)
location: region:97325-127201:-1
so has part: feature:97325-127201:-1:exon
subclass of: SO_0000011

122457161
type: Gene
SIO_000068: ncbigene

position:97325:-1
position: 97325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127201:-1
position: 127201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97325-127201:-1:exon

LOC122457161
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457161
product: uncharacterized LOC122457161
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276548.1
SIO_010081: LOC122457161
subclass of: SO_0000673
so part of: LOC122457161
location: complement(join(97325..97419,111181..111187,126899..127201))
location: region:97325-127201:-1
so has part: feature:126899-127201:-1:exon
so has part: feature:111181-111187:-1:exon
so has part: feature:97325-97419:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126899-127201:-1:exon

position:126899:-1
position: 126899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:111181-111187:-1:exon

position:111181:-1
position: 111181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111187:-1
position: 111187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:97325-97419:-1:exon

position:97419:-1
position: 97419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846469
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846469
product: zinc finger protein 2-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500630.1
SIO_010081: LOC119846469
subclass of: SO_0000673
so part of: LOC119846469
location: complement(join(111778..112329,112680..112793,116362..116488,117136..117203,121873..121987,124084..124378,129030..129338,129641..129767,129973..130144))
location: region:111778-130144:-1
so has part: feature:129973-130144:-1:exon
so has part: feature:129641-129767:-1:exon
so has part: feature:129030-129338:-1:exon
so has part: feature:124084-124378:-1:exon
so has part: feature:121873-121987:-1:exon
so has part: feature:117136-117203:-1:exon
so has part: feature:116362-116488:-1:exon
so has part: feature:112680-112793:-1:exon
so has part: feature:111778-112329:-1:exon

position:111778:-1
position: 111778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129973-130144:-1:exon

position:129973:-1
position: 129973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:129641-129767:-1:exon

position:129641:-1
position: 129641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129767:-1
position: 129767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:129030-129338:-1:exon

position:129030:-1
position: 129030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129338:-1
position: 129338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:124084-124378:-1:exon

position:124084:-1
position: 124084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124378:-1
position: 124378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:121873-121987:-1:exon

position:121873:-1
position: 121873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121987:-1
position: 121987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:117136-117203:-1:exon

position:117136:-1
position: 117136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:117203:-1
position: 117203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:116362-116488:-1:exon

position:116362:-1
position: 116362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116488:-1
position: 116488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:112680-112793:-1:exon

position:112680:-1
position: 112680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112793:-1
position: 112793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:111778-112329:-1:exon

position:112329:-1
position: 112329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846469
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 2-like
translation: MWYKEFTPLIGWKASESSEPASIVDASQEPSSCQRRVATVGCNVTSHPSRDQGRDMAAVGPVQGPVTFEEVAVYFTEEEWALLDPAQRALYGDVMQENYENVTSLGFPVSKPDVIFQLERGEETWAPDLWGSEEREILRGSHVAGDGMVRETVEQNPQQEDEQVEPQGTLLQKCKGRVSRSCEQKRLSGAT
SIO_010081: LOC119846469
subclass of: SO_0000673
so part of: LOC119846469
location: complement(join(112184..112329,112680..112793,116362..116488,117136..117203,121873..121987,124084..124089))
location: region:112184-124089:-1
so has part: feature:124084-124089:-1:exon
so has part: feature:121873-121987:-1:exon
so has part: feature:117136-117203:-1:exon
so has part: feature:116362-116488:-1:exon
so has part: feature:112680-112793:-1:exon
so has part: feature:112184-112329:-1:exon

XP_043356565.1
type: Protein
SIO_000068: ncbiprotein

position:112184:-1
position: 112184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124089:-1
position: 124089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124084-124089:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121873-121987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:117136-117203:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:116362-116488:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:112680-112793:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:112184-112329:-1:exon

LOC119846470
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846470
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(145971..151333)
location: region:145971-151333:-1
so has part: feature:145971-151333:-1:exon
subclass of: SO_0000011

119846470
type: Gene
SIO_000068: ncbigene

position:145971:-1
position: 145971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151333:-1
position: 151333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145971-151333:-1:exon

LOC119846470
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846470
product: uncharacterized LOC119846470
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276512.1
SIO_010081: LOC119846470
subclass of: SO_0000673
so part of: LOC119846470
location: complement(join(145971..148764,149327..149467,149924..150188,151222..151333))
location: region:145971-151333:-1
so has part: feature:151222-151333:-1:exon
so has part: feature:149924-150188:-1:exon
so has part: feature:149327-149467:-1:exon
so has part: feature:145971-148764:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151222-151333:-1:exon

position:151222:-1
position: 151222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:149924-150188:-1:exon

position:149924:-1
position: 149924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150188:-1
position: 150188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:149327-149467:-1:exon

position:149327:-1
position: 149327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149467:-1
position: 149467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:145971-148764:-1:exon

position:148764:-1
position: 148764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NGF
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: NGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 307624..365994
location: region:307624-365994:1
so has part: feature:307624-365994:1:exon
subclass of: SO_0000010

119846409
type: Gene
SIO_000068: ncbigene

position:307624:1
position: 307624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365994:1
position: 365994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307624-365994:1:exon

NGF
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: NGF
product: nerve growth factor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_006276510.1
SIO_010081: NGF
so part of: NGF
location: join(307624..307764,356407..356548,364073..365994)
location: region:307624-365994:1
so has part: feature:307624-307764:1:exon
so has part: feature:356407-356548:1:exon
so has part: feature:364073-365994:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307624-307764:1:exon

position:307764:1
position: 307764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:356407-356548:1:exon

position:356407:1
position: 356407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:356548:1
position: 356548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:364073-365994:1:exon

position:364073:1
position: 364073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NGF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: NGF
product: nerve growth factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_043500597.1
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: join(307624..307764,356407..356548,358249..358350,359559..360436)
location: region:307624-360436:1
so has part: feature:307624-307764:1:exon
so has part: feature:356407-356548:1:exon
so has part: feature:358249-358350:1:exon
so has part: feature:359559-360436:1:exon

position:360436:1
position: 360436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307624-307764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:356407-356548:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:358249-358350:1:exon

position:358249:1
position: 358249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358350:1
position: 358350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:359559-360436:1:exon

position:359559:1
position: 359559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NGF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: NGF
product: nerve growth factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038380052.2
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: join(307624..307764,356407..356548,359559..360436)
location: region:307624-360436:1
so has part: feature:307624-307764:1:exon
so has part: feature:356407-356548:1:exon
so has part: feature:359559-360436:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307624-307764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:356407-356548:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:359559-360436:1:exon

NGF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: NGF
product: nerve growth factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_043500598.1
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: join(307624..307764,356410..356548,358249..358350,359559..360436)
location: region:307624-360436:1
so has part: feature:307624-307764:1:exon
so has part: feature:356410-356548:1:exon
so has part: feature:358249-358350:1:exon
so has part: feature:359559-360436:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307624-307764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:356410-356548:1:exon

position:356410:1
position: 356410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:358249-358350:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359559-360436:1:exon

NGF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: NGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-nerve growth factor
translation: MSMLYYTLIIAFLLGIQAAPKSEDNAPWGFPAGPTIPNILQTKANHSPKAASHTANHHLAGKVDSREAGQAANITVDPKLFRKRQFRSPRVLFSTQPPPVLGDGQNMEYLGNADSLNRTIRTKRTAHPVLHRGEFSVCDSVSMWVGDKTTATDIKGKEVTVLGEVNINNNVFKQYFFETKCRDPKPVSSGCRGIDAKHWNSYCTTTHTFVKALTMEGKQAAWRFIRIDTACVCVLSRKTVRP
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: 359571..360299
location: region:359571-360299:1
so has part: feature:359571-360299:1:exon

XP_038235980.1
type: Protein
SIO_000068: ncbiprotein

position:359571:1
position: 359571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360299:1
position: 360299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359571-360299:1:exon

NGF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: NGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-nerve growth factor
translation: MSMLYYTLIIAFLLGIQAAPKSEDNAPWGFPAGPTIPNILQTKANHSPKAASHTANHHLAGKVDSREAGQAANITVDPKLFRKRQFRSPRVLFSTQPPPVLGDGQNMEYLGNADSLNRTIRTKRTAHPVLHRGEFSVCDSVSMWVGDKTTATDIKGKEVTVLGEVNINNNVFKQYFFETKCRDPKPVSSGCRGIDAKHWNSYCTTTHTFVKALTMEGKQAAWRFIRIDTACVCVLSRKTVRP
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: 359571..360299
location: region:359571-360299:1
so has part: feature:359571-360299:1:exon

XP_043356532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:359571-360299:1:exon

NGF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: NGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-nerve growth factor
translation: MSMLYYTLIIAFLLGIQAAPKSEDNAPWGFPAGPTIPNILQTKANHSPKAASHTANHHLAGKVDSREAGQAANITVDPKLFRKRQFRSPRVLFSTQPPPVLGDGQNMEYLGNADSLNRTIRTKRTAHPVLHRGEFSVCDSVSMWVGDKTTATDIKGKEVTVLGEVNINNNVFKQYFFETKCRDPKPVSSGCRGIDAKHWNSYCTTTHTFVKALTMEGKQAAWRFIRIDTACVCVLSRKTVRP
SIO_010081: NGF
subclass of: SO_0000673
so part of: NGF
location: 359571..360299
location: region:359571-360299:1
so has part: feature:359571-360299:1:exon

XP_043356533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:359571-360299:1:exon

TSPAN2
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: TSPAN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 461693..509367
location: region:461693-509367:1
so has part: feature:461693-509367:1:exon
subclass of: SO_0000010

119846522
type: Gene
SIO_000068: ncbigene

position:461693:1
position: 461693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509367:1
position: 509367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461693-509367:1:exon

TSPAN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TSPAN2
product: tetraspanin 2, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500253.1
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(461693..462291,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..509367)
location: region:461693-509367:1
so has part: feature:461693-462291:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-509367:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:461693-462291:1:exon

position:462291:1
position: 462291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

position:472713:1
position: 472713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472815:1
position: 472815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

position:497720:1
position: 497720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497817:1
position: 497817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

position:498312:1
position: 498312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498386:1
position: 498386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

position:499113:1
position: 499113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499211:1
position: 499211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

position:501454:1
position: 501454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501525:1
position: 501525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

position:502537:1
position: 502537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502620:1
position: 502620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:504764-509367:1:exon

position:504764:1
position: 504764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TSPAN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TSPAN2
product: tetraspanin 2, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500252.1
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(461694..461927,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..509367)
location: region:461694-509367:1
so has part: feature:461694-461927:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-509367:1:exon

position:461694:1
position: 461694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461694-461927:1:exon

position:461927:1
position: 461927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504764-509367:1:exon

TSPAN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TSPAN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetraspanin-2 isoform X2
translation: MPGRCWNPPVKEGGAEAQREQERSKGAAQGVPGSVPQLPAQGRPAAERRQLAGLAVIAFGLWLRFGGVLGDLTSEEKSPEYFYMGLYVLVGAGALMMTVGFFGCCGAVRESQCLLGAFFACLLVIFAAEVTAGVFAFIGKKAAVQEVQTIYEEAYKDYVMDMGKSNKTLIQFHTALQCCGKESEVQVKPTCPEGIQLPKNCLDEIQNLINSNLHLVGIVGIGIAGITIFGMIFSMVLCCAIRNTRDML
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(461778..461927,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..504829)
location: region:461778-504829:1
so has part: feature:461778-461927:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-504829:1:exon

XP_043356187.1
type: Protein
SIO_000068: ncbiprotein

position:461778:1
position: 461778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504829:1
position: 504829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461778-461927:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504764-504829:1:exon

TSPAN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TSPAN2
product: tetraspanin 2, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500250.1
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(462066..462660,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..509367)
location: region:462066-509367:1
so has part: feature:462066-462660:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-509367:1:exon

position:462066:1
position: 462066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462066-462660:1:exon

position:462660:1
position: 462660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504764-509367:1:exon

TSPAN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TSPAN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetraspanin-2 isoform X1
translation: MRCIKFLLFAFNFVFWVSGAGAGRGGAPRSRAAGKGLLRAPLMATEGWDGGAGGPGSLGRELGGFCRARLSCCCATLTLRAGLAPTSASHNPPDPRNPFPSCSPPPNTHFSRDTYKPSARRGGEHWGALSGACWIADLQLAGLAVIAFGLWLRFGGVLGDLTSEEKSPEYFYMGLYVLVGAGALMMTVGFFGCCGAVRESQCLLGAFFACLLVIFAAEVTAGVFAFIGKKAAVQEVQTIYEEAYKDYVMDMGKSNKTLIQFHTALQCCGKESEVQVKPTCPEGIQLPKNCLDEIQNLINSNLHLVGIVGIGIAGITIFGMIFSMVLCCAIRNTRDML
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(462244..462660,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..504829)
location: region:462244-504829:1
so has part: feature:462244-462660:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-504829:1:exon

XP_043356185.1
type: Protein
SIO_000068: ncbiprotein

position:462244:1
position: 462244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462244-462660:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504764-504829:1:exon

TSPAN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TSPAN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetraspanin-2 isoform X3
translation: MRCIKFLLFAFNFVFWLAGLAVIAFGLWLRFGGVLGDLTSEEKSPEYFYMGLYVLVGAGALMMTVGFFGCCGAVRESQCLLGAFFACLLVIFAAEVTAGVFAFIGKKAAVQEVQTIYEEAYKDYVMDMGKSNKTLIQFHTALQCCGKESEVQVKPTCPEGIQLPKNCLDEIQNLINSNLHLVGIVGIGIAGITIFGMIFSMVLCCAIRNTRDML
SIO_010081: TSPAN2
subclass of: SO_0000673
so part of: TSPAN2
location: join(462244..462291,472713..472815,497720..497817,498312..498386,499113..499211,501454..501525,502537..502620,504764..504829)
location: region:462244-504829:1
so has part: feature:462244-462291:1:exon
so has part: feature:472713-472815:1:exon
so has part: feature:497720-497817:1:exon
so has part: feature:498312-498386:1:exon
so has part: feature:499113-499211:1:exon
so has part: feature:501454-501525:1:exon
so has part: feature:502537-502620:1:exon
so has part: feature:504764-504829:1:exon

XP_043356188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:462244-462291:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:472713-472815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:497720-497817:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:498312-498386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499113-499211:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:501454-501525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502537-502620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504764-504829:1:exon

LOC119846305
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 519614..544178
location: region:519614-544178:1
so has part: feature:519614-544178:1:exon

119846305
type: Gene
SIO_000068: ncbigene

position:519614:1
position: 519614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544178:1
position: 544178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519614-544178:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 519614..519629
location: region:519614-519629:1
so has part: feature:519614-519629:1:exon

position:519629:1
position: 519629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519614-519629:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 520996..521169
location: region:520996-521169:1
so has part: feature:520996-521169:1:exon

position:520996:1
position: 520996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521169:1
position: 521169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:520996-521169:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 534601..534691
location: region:534601-534691:1
so has part: feature:534601-534691:1:exon

position:534601:1
position: 534601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534691:1
position: 534691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534601-534691:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 535587..535705
location: region:535587-535705:1
so has part: feature:535587-535705:1:exon

position:535587:1
position: 535587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:535705:1
position: 535705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535587-535705:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 536244..536446
location: region:536244-536446:1
so has part: feature:536244-536446:1:exon

position:536244:1
position: 536244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536446:1
position: 536446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536244-536446:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 536538..536691
location: region:536538-536691:1
so has part: feature:536538-536691:1:exon

position:536538:1
position: 536538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536691:1
position: 536691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536538-536691:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 537451..537487
location: region:537451-537487:1
so has part: feature:537451-537487:1:exon

position:537451:1
position: 537451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:537487:1
position: 537487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537451-537487:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 541897..541935
location: region:541897-541935:1
so has part: feature:541897-541935:1:exon

position:541897:1
position: 541897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541935:1
position: 541935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541897-541935:1:exon

LOC119846305
type: Exon
subclass of: SO_0000147
RO_0002162: 27794
gene: LOC119846305
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC119846305
subclass of: SO_0000673
so part of: LOC119846305
location: 542752..544178
location: region:542752-544178:1
so has part: feature:542752-544178:1:exon

position:542752:1
position: 542752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542752-544178:1:exon

TSHB
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: TSHB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(545501..547976)
location: region:545501-547976:-1
so has part: feature:545501-547976:-1:exon
subclass of: SO_0000010

119846306
type: Gene
SIO_000068: ncbigene

position:545501:-1
position: 545501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:547976:-1
position: 547976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:545501-547976:-1:exon

TSHB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TSHB
product: thyroid stimulating hormone subunit beta
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038379739.2
SIO_010081: TSHB
subclass of: SO_0000673
so part of: TSHB
location: complement(join(545501..545829,546658..546820,547694..547976))
location: region:545501-547976:-1
so has part: feature:547694-547976:-1:exon
so has part: feature:546658-546820:-1:exon
so has part: feature:545501-545829:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:547694-547976:-1:exon

position:547694:-1
position: 547694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:546658-546820:-1:exon

position:546658:-1
position: 546658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546820:-1
position: 546820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:545501-545829:-1:exon

position:545829:-1
position: 545829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TSHB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TSHB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: thyrotropin subunit beta
translation: MQTQATILRKDSAANSMSPIFLMSLLFGLTFGQAMSFCAPIEYIIHVEKRECAYCLAINTTICAGFCMTRDSNGKKLLLKSALSQDVCTYKDMVYRTVVLPGCPRHTVPYYSYPVATNCKCGKCNTDYSDCIHETVRTDYCTKPQKPYNV
SIO_010081: TSHB
subclass of: SO_0000673
so part of: TSHB
location: complement(join(545587..545829,546658..546820,547694..547740))
location: region:545587-547740:-1
so has part: feature:547694-547740:-1:exon
so has part: feature:546658-546820:-1:exon
so has part: feature:545587-545829:-1:exon

XP_038235667.1
type: Protein
SIO_000068: ncbiprotein

position:545587:-1
position: 545587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:547740:-1
position: 547740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547694-547740:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:546658-546820:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:545587-545829:-1:exon

LOC122457142
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 564090..573791
location: region:564090-573791:1
so has part: feature:564090-573791:1:exon
subclass of: SO_0000010

122457142
type: Gene
SIO_000068: ncbigene

position:564090:1
position: 564090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573791:1
position: 573791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564090-573791:1:exon

LOC122457142
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC122457142
product: uncharacterized LOC122457142, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_043500594.1
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(564090..564276,568250..568822,570234..570395,573367..573791)
location: region:564090-573791:1
so has part: feature:564090-564276:1:exon
so has part: feature:568250-568822:1:exon
so has part: feature:570234-570395:1:exon
so has part: feature:573367-573791:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564090-564276:1:exon

position:564276:1
position: 564276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:568250-568822:1:exon

position:568250:1
position: 568250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:568822:1
position: 568822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:570234-570395:1:exon

position:570234:1
position: 570234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570395:1
position: 570395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:573367-573791:1:exon

position:573367:1
position: 573367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122457142
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC122457142
product: uncharacterized LOC122457142, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_043500595.1
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(566708..567263,568250..568822,573367..573791)
location: region:566708-573791:1
so has part: feature:566708-567263:1:exon
so has part: feature:568250-568822:1:exon
so has part: feature:573367-573791:1:exon

position:566708:1
position: 566708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:566708-567263:1:exon

position:567263:1
position: 567263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:568250-568822:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:573367-573791:1:exon

LOC122457142
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC122457142
product: uncharacterized LOC122457142, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_043500593.1
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(566714..567263,568250..568822,570234..570395,573367..573791)
location: region:566714-573791:1
so has part: feature:566714-567263:1:exon
so has part: feature:568250-568822:1:exon
so has part: feature:570234-570395:1:exon
so has part: feature:573367-573791:1:exon

position:566714:1
position: 566714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:566714-567263:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:568250-568822:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:570234-570395:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:573367-573791:1:exon

LOC122457142
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC122457142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122457142 isoform X1
translation: MDGTQLVCVKLLLICHIVVKCSVQAANQPPPVNEDMQTEAASNESGNTTISRSIVMSTISDKEAVNTTTVQNISASWNTITVPAKITSSLALTTLSHFARRTLHLPNTDTSSPSDITIRFNTVVTSPTVSTFNQATDTDSNPRMSSGTLKPTAQSSTATQLNTSKALDSVPITQASGGIHLRNSEAILIIIFSSILTFAVLAIVICSLDKYRKRRAQYSHHPLYDTSSETADIYTTPDDTLMISGGLYDAPRVYNPNMTVLDDDELQAENLPFGSRPGKFRLEILSGENEKGLSPTFDRFQPPPQHS
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(568294..568822,570234..570395,573367..573599)
location: region:568294-573599:1
so has part: feature:568294-568822:1:exon
so has part: feature:570234-570395:1:exon
so has part: feature:573367-573599:1:exon

XP_043356528.1
type: Protein
SIO_000068: ncbiprotein

position:568294:1
position: 568294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573599:1
position: 573599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568294-568822:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:570234-570395:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:573367-573599:1:exon

LOC122457142
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC122457142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122457142 isoform X1
translation: MDGTQLVCVKLLLICHIVVKCSVQAANQPPPVNEDMQTEAASNESGNTTISRSIVMSTISDKEAVNTTTVQNISASWNTITVPAKITSSLALTTLSHFARRTLHLPNTDTSSPSDITIRFNTVVTSPTVSTFNQATDTDSNPRMSSGTLKPTAQSSTATQLNTSKALDSVPITQASGGIHLRNSEAILIIIFSSILTFAVLAIVICSLDKYRKRRAQYSHHPLYDTSSETADIYTTPDDTLMISGGLYDAPRVYNPNMTVLDDDELQAENLPFGSRPGKFRLEILSGENEKGLSPTFDRFQPPPQHS
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(568294..568822,570234..570395,573367..573599)
location: region:568294-573599:1
so has part: feature:568294-568822:1:exon
so has part: feature:570234-570395:1:exon
so has part: feature:573367-573599:1:exon

XP_043356529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:568294-568822:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:570234-570395:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:573367-573599:1:exon

LOC122457142
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC122457142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122457142 isoform X2
translation: MDGTQLVCVKLLLICHIVVKCSVQAANQPPPVNEDMQTEAASNESGNTTISRSIVMSTISDKEAVNTTTVQNISASWNTITVPAKITSSLALTTLSHFARRTLHLPNTDTSSPSDITIRFNTVVTSPTVSTFNQATDTDSNPRMSSGTLKPTAQSSTATQLNTSKALDSVPITQASADIYTTPDDTLMISGGLYDAPRVYNPNMTVLDDDELQAENLPFGSRPGKFRLEILSGENEKGLSPTFDRFQPPPQHS
SIO_010081: LOC122457142
subclass of: SO_0000673
so part of: LOC122457142
location: join(568294..568822,573367..573599)
location: region:568294-573599:1
so has part: feature:568294-568822:1:exon
so has part: feature:573367-573599:1:exon

XP_043356530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:568294-568822:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:573367-573599:1:exon

SYCP1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: SYCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(577553..641023)
location: region:577553-641023:-1
so has part: feature:577553-641023:-1:exon
subclass of: SO_0000010

119846523
type: Gene
SIO_000068: ncbigene

position:577553:-1
position: 577553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641023:-1
position: 641023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577553-641023:-1:exon

SYCP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SYCP1
product: synaptonemal complex protein 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500380.1
SIO_010081: SYCP1
subclass of: SO_0000673
so part of: SYCP1
location: complement(join(577553..578347,578437..578523,578939..579082,588414..588593,588751..588810,590393..590467,591424..591516,592905..593015,595271..595387,597696..597758,598865..598927,599629..599691,601782..601867,603872..603938,604208..604325,607965..608068,615872..615976,617732..617848,620172..620233,621503..621570,624149..624333,625637..625731,627657..627765,628774..628847,630679..630748,633166..633224,635341..635414,635628..635695,636267..636431,637691..637737,637931..638015,640562..641023))
location: region:577553-641023:-1
so has part: feature:640562-641023:-1:exon
so has part: feature:637931-638015:-1:exon
so has part: feature:637691-637737:-1:exon
so has part: feature:636267-636431:-1:exon
so has part: feature:635628-635695:-1:exon
so has part: feature:635341-635414:-1:exon
so has part: feature:633166-633224:-1:exon
so has part: feature:630679-630748:-1:exon
so has part: feature:628774-628847:-1:exon
so has part: feature:627657-627765:-1:exon
so has part: feature:625637-625731:-1:exon
so has part: feature:624149-624333:-1:exon
so has part: feature:621503-621570:-1:exon
so has part: feature:620172-620233:-1:exon
so has part: feature:617732-617848:-1:exon
so has part: feature:615872-615976:-1:exon
so has part: feature:607965-608068:-1:exon
so has part: feature:604208-604325:-1:exon
so has part: feature:603872-603938:-1:exon
so has part: feature:601782-601867:-1:exon
so has part: feature:599629-599691:-1:exon
so has part: feature:598865-598927:-1:exon
so has part: feature:597696-597758:-1:exon
so has part: feature:595271-595387:-1:exon
so has part: feature:592905-593015:-1:exon
so has part: feature:591424-591516:-1:exon
so has part: feature:590393-590467:-1:exon
so has part: feature:588751-588810:-1:exon
so has part: feature:588414-588593:-1:exon
so has part: feature:578939-579082:-1:exon
so has part: feature:578437-578523:-1:exon
so has part: feature:577553-578347:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:640562-641023:-1:exon

position:640562:-1
position: 640562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:637931-638015:-1:exon

position:637931:-1
position: 637931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:638015:-1
position: 638015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:637691-637737:-1:exon

position:637691:-1
position: 637691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637737:-1
position: 637737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:636267-636431:-1:exon

position:636267:-1
position: 636267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636431:-1
position: 636431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:635628-635695:-1:exon

position:635628:-1
position: 635628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635695:-1
position: 635695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:635341-635414:-1:exon

position:635341:-1
position: 635341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635414:-1
position: 635414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:633166-633224:-1:exon

position:633166:-1
position: 633166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633224:-1
position: 633224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:630679-630748:-1:exon

position:630679:-1
position: 630679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:630748:-1
position: 630748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:628774-628847:-1:exon

position:628774:-1
position: 628774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628847:-1
position: 628847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:627657-627765:-1:exon

position:627657:-1
position: 627657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627765:-1
position: 627765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:625637-625731:-1:exon

position:625637:-1
position: 625637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625731:-1
position: 625731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:624149-624333:-1:exon

position:624149:-1
position: 624149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:624333:-1
position: 624333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:621503-621570:-1:exon

position:621503:-1
position: 621503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:621570:-1
position: 621570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:620172-620233:-1:exon

position:620172:-1
position: 620172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:620233:-1
position: 620233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:617732-617848:-1:exon

position:617732:-1
position: 617732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:617848:-1
position: 617848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:615872-615976:-1:exon

position:615872:-1
position: 615872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615976:-1
position: 615976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:607965-608068:-1:exon

position:607965:-1
position: 607965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608068:-1
position: 608068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:604208-604325:-1:exon

position:604208:-1
position: 604208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604325:-1
position: 604325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:603872-603938:-1:exon

position:603872:-1
position: 603872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603938:-1
position: 603938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:601782-601867:-1:exon

position:601782:-1
position: 601782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601867:-1
position: 601867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:599629-599691:-1:exon

position:599629:-1
position: 599629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599691:-1
position: 599691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:598865-598927:-1:exon

position:598865:-1
position: 598865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:598927:-1
position: 598927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:597696-597758:-1:exon

position:597696:-1
position: 597696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597758:-1
position: 597758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:595271-595387:-1:exon

position:595271:-1
position: 595271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595387:-1
position: 595387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:592905-593015:-1:exon

position:592905:-1
position: 592905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593015:-1
position: 593015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:591424-591516:-1:exon

position:591424:-1
position: 591424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591516:-1
position: 591516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:590393-590467:-1:exon

position:590393:-1
position: 590393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:590467:-1
position: 590467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:588751-588810:-1:exon

position:588751:-1
position: 588751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588810:-1
position: 588810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:588414-588593:-1:exon

position:588414:-1
position: 588414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588593:-1
position: 588593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:578939-579082:-1:exon

position:578939:-1
position: 578939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579082:-1
position: 579082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:578437-578523:-1:exon

position:578437:-1
position: 578437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578523:-1
position: 578523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:577553-578347:-1:exon

position:578347:-1
position: 578347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SYCP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SYCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptonemal complex protein 1
translation: MEKEKPFTLFVPPRLSSSSQVSAVKPQASARDAGSCQVFNKCTEDYFSLPFVMTSTPSHGEVSDPDPVSQKINFLPGVEEENIETMHELYAKLYKEAEKIKRWKVTVESELKQREKKLQENKKIIEAQRKAIQELQFENEKLSLKLEDEICENKDLLQENSATRHLCNLLKETCARSTEKSNKYEHEREETRHLYMVLNNNIERMILAFEELHVQAENSRLEMCFKLKEAAEKVEQLEKEYKMEINVKEKQLSVLTVQSGEKDNKMRDITVQLQESRDKIIDLEEATKQQKEMLKESQSKQEHLMGELEEAKVLLQKTETAQKSLENELRTAMKTLIEVTVEKEAQMEELKETRALHASVVEEFEIAVSNLKELLKREQNRLKKLEEESEILASELQNKSVELEEMSKLKSDKETQLEDLTESLERSVKLQKDLEQQLVCEQSEKMILLKEREIRDSDHLEFKEQVQVLLSEKKHLEITIAKLQKREKEMKDSLQIREKEVCDLEVRLTGAVENEQNCLKQIAALNAELEKEMIQNEELNMNCSKLLLEKEQISQKKSDTVTELKKLQEVHKDNRKKEEKTKKLIENLEETNGQLRNDLESLKEKMKRKDEEAKTKLDESEENTRNIGSEISRKEKQLKMLENKFNNLKKQVENKTKYNEELQQENKVLKKKIAAESKQSSIYEGKVNKLQLELENVNRQHKETVDSYQKEIEAKNITEEKLLEKGEKMRLIADEAVILQKEIDIRCQHKIAEMVALMEKHKHQYDKMVEEKDTELELCKMKEQEQMAVKQSLETELSHVKSELLSLKEQVKIEVKEKETLTREAKENAVSAKEKKHKTIQTSFTETPKTNLKLASASVNSKKKLSQNFTTFRENKLENKEMSSWTPTKSVLVTPSLKTYTVKTPPKYKLQRESMNPLSEEDMKKKRKVLLELDTHSDSSEHNDLLSIVSEEEMFKKLYKNCPQASRLCVMTPKKIPTLSTIKSPGAALKLTAMRKMRETGWTAVSKMDRKKKMKEAEKLFA
SIO_010081: SYCP1
subclass of: SO_0000673
so part of: SYCP1
location: complement(join(578204..578347,578437..578523,578939..579082,588414..588593,588751..588810,590393..590467,591424..591516,592905..593015,595271..595387,597696..597758,598865..598927,599629..599691,601782..601867,603872..603938,604208..604325,607965..608068,615872..615976,617732..617848,620172..620233,621503..621570,624149..624333,625637..625731,627657..627765,628774..628847,630679..630748,633166..633224,635341..635414,635628..635695,636267..636431,637691..637737,637931..638015,640562..640672))
location: region:578204-640672:-1
so has part: feature:640562-640672:-1:exon
so has part: feature:637931-638015:-1:exon
so has part: feature:637691-637737:-1:exon
so has part: feature:636267-636431:-1:exon
so has part: feature:635628-635695:-1:exon
so has part: feature:635341-635414:-1:exon
so has part: feature:633166-633224:-1:exon
so has part: feature:630679-630748:-1:exon
so has part: feature:628774-628847:-1:exon
so has part: feature:627657-627765:-1:exon
so has part: feature:625637-625731:-1:exon
so has part: feature:624149-624333:-1:exon
so has part: feature:621503-621570:-1:exon
so has part: feature:620172-620233:-1:exon
so has part: feature:617732-617848:-1:exon
so has part: feature:615872-615976:-1:exon
so has part: feature:607965-608068:-1:exon
so has part: feature:604208-604325:-1:exon
so has part: feature:603872-603938:-1:exon
so has part: feature:601782-601867:-1:exon
so has part: feature:599629-599691:-1:exon
so has part: feature:598865-598927:-1:exon
so has part: feature:597696-597758:-1:exon
so has part: feature:595271-595387:-1:exon
so has part: feature:592905-593015:-1:exon
so has part: feature:591424-591516:-1:exon
so has part: feature:590393-590467:-1:exon
so has part: feature:588751-588810:-1:exon
so has part: feature:588414-588593:-1:exon
so has part: feature:578939-579082:-1:exon
so has part: feature:578437-578523:-1:exon
so has part: feature:578204-578347:-1:exon

XP_043356315.1
type: Protein
SIO_000068: ncbiprotein

position:578204:-1
position: 578204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:640672:-1
position: 640672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:640562-640672:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:637931-638015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:637691-637737:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:636267-636431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:635628-635695:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:635341-635414:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:633166-633224:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:630679-630748:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:628774-628847:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:627657-627765:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:625637-625731:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:624149-624333:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:621503-621570:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:620172-620233:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:617732-617848:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:615872-615976:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:607965-608068:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:604208-604325:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:603872-603938:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:601782-601867:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:599629-599691:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:598865-598927:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:597696-597758:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:595271-595387:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:592905-593015:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:591424-591516:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:590393-590467:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:588751-588810:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588414-588593:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:578939-579082:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:578437-578523:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:578204-578347:-1:exon

LOC119846376
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846376
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(642418..669790)
location: region:642418-669790:-1
so has part: feature:642418-669790:-1:exon
subclass of: SO_0000010

119846376
type: Gene
SIO_000068: ncbigene

position:642418:-1
position: 642418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:669790:-1
position: 669790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:642418-669790:-1:exon

LOC119846376
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846376
product: bile acid receptor-like, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500379.1
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(642418..643061,645156..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658532,665599..665802,667113..669191,669726..669790))
location: region:642418-669790:-1
so has part: feature:669726-669790:-1:exon
so has part: feature:667113-669191:-1:exon
so has part: feature:665599-665802:-1:exon
so has part: feature:658406-658532:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:645156-645212:-1:exon
so has part: feature:642418-643061:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:669726-669790:-1:exon

position:669726:-1
position: 669726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:667113-669191:-1:exon

position:667113:-1
position: 667113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:669191:-1
position: 669191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:665599-665802:-1:exon

position:665599:-1
position: 665599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:665802:-1
position: 665802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:658406-658532:-1:exon

position:658406:-1
position: 658406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658532:-1
position: 658532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:653284-653646:-1:exon

position:653284:-1
position: 653284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:653646:-1
position: 653646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:649320-649460:-1:exon

position:649320:-1
position: 649320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:649460:-1
position: 649460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:648510-648649:-1:exon

position:648510:-1
position: 648510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648649:-1
position: 648649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:648290-648394:-1:exon

position:648290:-1
position: 648290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648394:-1
position: 648394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:648065-648164:-1:exon

position:648065:-1
position: 648065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648164:-1
position: 648164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:646609-646737:-1:exon

position:646609:-1
position: 646609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:646737:-1
position: 646737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:645830-645949:-1:exon

position:645830:-1
position: 645830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645949:-1
position: 645949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:645564-645677:-1:exon

position:645564:-1
position: 645564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645677:-1
position: 645677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:645156-645212:-1:exon

position:645156:-1
position: 645156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645212:-1
position: 645212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:642418-643061:-1:exon

position:643061:-1
position: 643061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846376
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846376
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: bile acid receptor-like isoform X2
translation: MKQLELEQSMANTFVTVSDGYCLAEPIQYYDVLPEHINYQLQDSDFQATPYCQYSTVQFPPVLQSQPSQSQYNTYSLDSQYSDGQYVISNCELNKPSCMVAHNDDDGYHGLKRPRLSHSSLRMKGQEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAIYRCKNGGHCEMDMYMRRKCQECRLKKCKAVGMLAECLLTEVQCKSKRLRKNFKQKSSFLCSIKVEDEGVNSKHVSSTTRPGKIQERMELTPVEHQLIDHIVAAHQKHTIPLEEAKKFLQETANPEESFLRLSETAVVHVQVLVDFTKRLPGFESLASDDQIALLKGSTVEAMFLRSAQIYNQRVNECQSSVSESHVRFSDHAVCCHVQDLDKSTIYSMEISRSEESPTSTTTTGITEEFITALFYFYRSMGELNVTETEYALLVATTIFFSDRPLLKNKQHVEKLQEPLLDSWASGLLNCKPQCCAMLDRGGGGGAVALMYRLTGEQNLAYKGE
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(642928..643061,645156..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658496))
location: region:642928-658496:-1
so has part: feature:658406-658496:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:645156-645212:-1:exon
so has part: feature:642928-643061:-1:exon

XP_043356314.1
type: Protein
SIO_000068: ncbiprotein

position:642928:-1
position: 642928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658496:-1
position: 658496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658406-658496:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653284-653646:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:649320-649460:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:648510-648649:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:648290-648394:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648065-648164:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:646609-646737:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:645830-645949:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:645564-645677:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:645156-645212:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:642928-643061:-1:exon

LOC119846376
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846376
product: bile acid receptor-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500377.1
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(644347..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658532,659496..659628,665599..665802,667113..669191,669726..669790))
location: region:644347-669790:-1
so has part: feature:669726-669790:-1:exon
so has part: feature:667113-669191:-1:exon
so has part: feature:665599-665802:-1:exon
so has part: feature:659496-659628:-1:exon
so has part: feature:658406-658532:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:644347-645212:-1:exon

position:644347:-1
position: 644347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:669726-669790:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:667113-669191:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:665599-665802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:659496-659628:-1:exon

position:659496:-1
position: 659496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:659628:-1
position: 659628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:658406-658532:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:653284-653646:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:649320-649460:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:648510-648649:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648290-648394:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:648065-648164:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:646609-646737:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:645830-645949:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:645564-645677:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:644347-645212:-1:exon

LOC119846376
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846376
product: bile acid receptor-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500378.1
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(644347..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658532,661194..661309))
location: region:644347-661309:-1
so has part: feature:661194-661309:-1:exon
so has part: feature:658406-658532:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:644347-645212:-1:exon

position:661309:-1
position: 661309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661194-661309:-1:exon

position:661194:-1
position: 661194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:658406-658532:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:653284-653646:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:649320-649460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:648510-648649:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648290-648394:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:648065-648164:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:646609-646737:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:645830-645949:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:645564-645677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644347-645212:-1:exon

LOC119846376
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846376
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: bile acid receptor-like isoform X1
translation: MKQLELEQSMANTFVTVSDGYCLAEPIQYYDVLPEHINYQLQDSDFQATPYCQYSTVQFPPVLQSQPSQSQYNTYSLDSQYSDGQYVISNCELNKPSCMVAHNDDDGYHGLKRPRLSHSSLRMKGQEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAIYRCKNGGHCEMDMYMRRKCQECRLKKCKAVGMLAECLLTEVQCKSKRLRKNFKQKSSFLCSIKVEDEGVNSKHVSSTTRPGKIQERMELTPVEHQLIDHIVAAHQKHTIPLEEAKKFLQETANPEESFLRLSETAVVHVQVLVDFTKRLPGFESLASDDQIALLKGSTVEAMFLRSAQIYNQRVNECQSSVSESHVRFSDHAVCCHVQDLDKSTIYSMEISRSEESPTSTTTTGITEEFITALFYFYRSMGELNVTETEYALLVATTIFFSDRPLLKNKQHVEKLQEPLLGILYKYSKIYHPEDPQHFARLIGRLTELRTLNHNHSEVLVMWRTKDPKLTSLLCEIWDLH
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(644974..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658496))
location: region:644974-658496:-1
so has part: feature:658406-658496:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:644974-645212:-1:exon

XP_043356312.1
type: Protein
SIO_000068: ncbiprotein

position:644974:-1
position: 644974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658406-658496:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653284-653646:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:649320-649460:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:648510-648649:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:648290-648394:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648065-648164:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:646609-646737:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:645830-645949:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:645564-645677:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644974-645212:-1:exon

LOC119846376
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846376
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: bile acid receptor-like isoform X1
translation: MKQLELEQSMANTFVTVSDGYCLAEPIQYYDVLPEHINYQLQDSDFQATPYCQYSTVQFPPVLQSQPSQSQYNTYSLDSQYSDGQYVISNCELNKPSCMVAHNDDDGYHGLKRPRLSHSSLRMKGQEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAIYRCKNGGHCEMDMYMRRKCQECRLKKCKAVGMLAECLLTEVQCKSKRLRKNFKQKSSFLCSIKVEDEGVNSKHVSSTTRPGKIQERMELTPVEHQLIDHIVAAHQKHTIPLEEAKKFLQETANPEESFLRLSETAVVHVQVLVDFTKRLPGFESLASDDQIALLKGSTVEAMFLRSAQIYNQRVNECQSSVSESHVRFSDHAVCCHVQDLDKSTIYSMEISRSEESPTSTTTTGITEEFITALFYFYRSMGELNVTETEYALLVATTIFFSDRPLLKNKQHVEKLQEPLLGILYKYSKIYHPEDPQHFARLIGRLTELRTLNHNHSEVLVMWRTKDPKLTSLLCEIWDLH
SIO_010081: LOC119846376
subclass of: SO_0000673
so part of: LOC119846376
location: complement(join(644974..645212,645564..645677,645830..645949,646609..646737,648065..648164,648290..648394,648510..648649,649320..649460,653284..653646,658406..658496))
location: region:644974-658496:-1
so has part: feature:658406-658496:-1:exon
so has part: feature:653284-653646:-1:exon
so has part: feature:649320-649460:-1:exon
so has part: feature:648510-648649:-1:exon
so has part: feature:648290-648394:-1:exon
so has part: feature:648065-648164:-1:exon
so has part: feature:646609-646737:-1:exon
so has part: feature:645830-645949:-1:exon
so has part: feature:645564-645677:-1:exon
so has part: feature:644974-645212:-1:exon

XP_043356313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:658406-658496:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653284-653646:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:649320-649460:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:648510-648649:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:648290-648394:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648065-648164:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:646609-646737:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:645830-645949:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:645564-645677:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:644974-645212:-1:exon

SIKE1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 681525..690742
location: region:681525-690742:1
so has part: feature:681525-690742:1:exon
subclass of: SO_0000010

119846493
type: Gene
SIO_000068: ncbigene

position:681525:1
position: 681525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:690742:1
position: 690742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681525-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500299.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681525..681531,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..690742)
location: region:681525-690742:1
so has part: feature:681525-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:681525-681531:1:exon

position:681531:1
position: 681531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

position:686113:1
position: 686113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:686279:1
position: 686279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

position:686365:1
position: 686365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:686470:1
position: 686470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

position:687254:1
position: 687254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:687396:1
position: 687396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

position:687808:1
position: 687808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:687921:1
position: 687921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

position:688048:1
position: 688048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:688109:1
position: 688109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:688600-690742:1:exon

position:688600:1
position: 688600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500302.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681525..681531,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..690742)
location: region:681525-690742:1
so has part: feature:681525-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:681525-681531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688621-690742:1:exon

position:688621:1
position: 688621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500301.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681525..681531,686113..686279,686365..686470,687254..687396,687808..687921,688600..690742)
location: region:681525-690742:1
so has part: feature:681525-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:681525-681531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-690742:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X3
translation: MLTMTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEPKYRFLQLENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681531,686113..686279,686365..686470,687254..687396,687808..687921,688600..688722)
location: region:681531-688722:1
so has part: feature:681531-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-688722:1:exon

XP_043356236.1
type: Protein
SIO_000068: ncbiprotein

position:688722:1
position: 688722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681531-681531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X1
translation: MLTMTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHQNIDFCSLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681531,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..688678)
location: region:681531-688678:1
so has part: feature:681531-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-688678:1:exon

XP_043356234.1
type: Protein
SIO_000068: ncbiprotein

position:688678:1
position: 688678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681531-681531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688600-688678:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X4
translation: MLTMTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(681531,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..688678)
location: region:681531-688678:1
so has part: feature:681531-681531:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-688678:1:exon

XP_043356237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:681531-681531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688621-688678:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380252.2
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685203..685358,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..690742)
location: region:685203-690742:1
so has part: feature:685203-685358:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-690742:1:exon

position:685203:1
position: 685203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685203-685358:1:exon

position:685358:1
position: 685358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688600-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X8
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500305.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685203..685358,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..690742)
location: region:685203-690742:1
so has part: feature:685203-685358:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685203-685358:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688621-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380254.2
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685203..685358,686113..686279,686365..686470,687254..687396,687808..687921,688600..690742)
location: region:685203-690742:1
so has part: feature:685203-685358:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685203-685358:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X10
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380256.2
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685204..685358,686113..686279,686365..686470,687254..687396,687808..687921,688621..690742)
location: region:685204-690742:1
so has part: feature:685204-685358:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-690742:1:exon

position:685204:1
position: 685204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685204-685358:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688621-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X12
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500307.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685367..685575,686113..686279,686365..686470,687254..687396,687808..687921,688621..690742)
location: region:685367-690742:1
so has part: feature:685367-685575:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-690742:1:exon

position:685367:1
position: 685367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685367-685575:1:exon

position:685575:1
position: 685575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688621-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X11
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380255.2
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685368..685594,686113..686279,686365..686470,687254..687396,687808..687921,688621..690742)
location: region:685368-690742:1
so has part: feature:685368-685594:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-690742:1:exon

position:685368:1
position: 685368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685368-685594:1:exon

position:685594:1
position: 685594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688621-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X7
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500304.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685375..685575,686113..686279,686365..686470,687254..687396,687808..687921,688600..690742)
location: region:685375-690742:1
so has part: feature:685375-685575:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-690742:1:exon

position:685375:1
position: 685375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685375-685575:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500300.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685388..685575,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..690742)
location: region:685388-690742:1
so has part: feature:685388-685575:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-690742:1:exon

position:685388:1
position: 685388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685388-685575:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688600-690742:1:exon

SIKE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SIKE1
product: suppressor of IKBKE 1, transcript variant X9
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500306.1
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(685388..685575,686113..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..690742)
location: region:685388-690742:1
so has part: feature:685388-685575:1:exon
so has part: feature:686113-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-690742:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685388-685575:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686113-686279:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:688621-690742:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X5
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEPKYRFLQLENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688600..688722)
location: region:686121-688722:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-688722:1:exon

XP_038236182.1
type: Protein
SIO_000068: ncbiprotein

position:686121:1
position: 686121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688600-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X5
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEPKYRFLQLENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688600..688722)
location: region:686121-688722:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688600-688722:1:exon

XP_043356239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688600-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X7
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688621..688722)
location: region:686121-688722:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-688722:1:exon

XP_038236183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688621-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X7
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688621..688722)
location: region:686121-688722:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-688722:1:exon

XP_038236184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688621-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X7
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISKETIEVRREELPDIASQATQ
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688621..688722)
location: region:686121-688722:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688621-688722:1:exon

XP_043356242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688621-688722:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X2
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHQNIDFCSLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..688678)
location: region:686121-688678:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-688678:1:exon

XP_038236180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-688678:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X2
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHQNIDFCSLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688048..688109,688600..688678)
location: region:686121-688678:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688600-688678:1:exon

XP_043356235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688600-688678:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X6
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..688678)
location: region:686121-688678:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-688678:1:exon

XP_043356240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688621-688678:1:exon

SIKE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SIKE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of IKBKE 1 isoform X6
translation: MTCTIEKILTDAKTLLERLKDHDNAAESLIDQSTVLHKRVAAMKEIGTSLSEKYQEDATDLKDTSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLHLIMGRKDVDAEPVLKVHVAHSVEIESHVDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLEDVTQTGFLKGNPNYLFKFCIHLKIKSCGSCYPSAKKLSR
SIO_010081: SIKE1
subclass of: SO_0000673
so part of: SIKE1
location: join(686121..686279,686365..686470,687254..687396,687808..687921,688048..688109,688621..688678)
location: region:686121-688678:1
so has part: feature:686121-686279:1:exon
so has part: feature:686365-686470:1:exon
so has part: feature:687254-687396:1:exon
so has part: feature:687808-687921:1:exon
so has part: feature:688048-688109:1:exon
so has part: feature:688621-688678:1:exon

XP_043356241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686121-686279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:686365-686470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:687254-687396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:687808-687921:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688048-688109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688621-688678:1:exon

CSDE1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 693303..746667
location: region:693303-746667:1
so has part: feature:693303-746667:1:exon
subclass of: SO_0000010

119846216
type: Gene
SIO_000068: ncbigene

position:693303:1
position: 693303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:746667:1
position: 746667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693303-746667:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379551.2
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(693303..693457,699295..699685,705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:693303-746667:1
so has part: feature:693303-693457:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:693303-693457:1:exon

position:693457:1
position: 693457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

position:699295:1
position: 699295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699685:1
position: 699685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

position:705870:1
position: 705870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706068:1
position: 706068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

position:707124:1
position: 707124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:707233:1
position: 707233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:707601-707693:1:exon

position:707601:1
position: 707601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:707693:1
position: 707693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:708329-708426:1:exon

position:708329:1
position: 708329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708426:1
position: 708426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:709732-709813:1:exon

position:709732:1
position: 709732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709813:1
position: 709813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:710866-710994:1:exon

position:710866:1
position: 710866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710994:1
position: 710994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:711102-711227:1:exon

position:711102:1
position: 711102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711227:1
position: 711227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:712347-712559:1:exon

position:712347:1
position: 712347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712559:1
position: 712559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:715098-715238:1:exon

position:715098:1
position: 715098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715238:1
position: 715238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:715317-715475:1:exon

position:715317:1
position: 715317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715475:1
position: 715475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:716209-716316:1:exon

position:716209:1
position: 716209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:716316:1
position: 716316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:721169-721344:1:exon

position:721169:1
position: 721169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721344:1
position: 721344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:722262-722374:1:exon

position:722262:1
position: 722262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:722374:1
position: 722374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:725488-725607:1:exon

position:725488:1
position: 725488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:725607:1
position: 725607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:725889-726067:1:exon

position:725889:1
position: 725889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:726067:1
position: 726067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:731159-731322:1:exon

position:731159:1
position: 731159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:731322:1
position: 731322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:733586-733718:1:exon

position:733586:1
position: 733586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:733718:1
position: 733718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:745390-746667:1:exon

position:745390:1
position: 745390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379554.2
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(693303..693457,699295..699685,705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:693303-746667:1
so has part: feature:693303-693457:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:693303-693457:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:745390-746667:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_038379556.2
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(693303..693457,699295..699685,705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,733586..733719)
location: region:693303-733719:1
so has part: feature:693303-693457:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:733586-733719:1:exon

position:733719:1
position: 733719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693303-693457:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:707601-707693:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:733586-733719:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379553.2
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(693449..693649,699295..699685,705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:693449-746667:1
so has part: feature:693449-693649:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

position:693449:1
position: 693449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693449-693649:1:exon

position:693649:1
position: 693649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:707601-707693:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:745390-746667:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379555.2
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(693465..693649,699295..699685,705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:693465-746667:1
so has part: feature:693465-693649:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

position:693465:1
position: 693465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693465-693649:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:745390-746667:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500296.1
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(694119..694192,699295..699685,705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:694119-746667:1
so has part: feature:694119-694192:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

position:694119:1
position: 694119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694119-694192:1:exon

position:694192:1
position: 694192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:745390-746667:1:exon

CSDE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CSDE1
product: cold shock domain containing E1, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500297.1
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(697053..697154,699295..699685,705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..746667)
location: region:697053-746667:1
so has part: feature:697053-697154:1:exon
so has part: feature:699295-699685:1:exon
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-746667:1:exon

position:697053:1
position: 697053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697053-697154:1:exon

position:697154:1
position: 697154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:699295-699685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:745390-746667:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X1
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_038235479.1
type: Protein
SIO_000068: ncbiprotein

position:745437:1
position: 745437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:707601-707693:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X1
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_038235481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:707601-707693:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X2
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_038235482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X2
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_038235483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X2
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_043356231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X2
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGAKAVAAPRPDRLVNRLKSITLDDASAPRLTVLRQPRGPDNSKGFGAERKIRQAGVID
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,731159..731322,733586..733718,745390..745437)
location: region:705870-745437:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:731159-731322:1:exon
so has part: feature:733586-733718:1:exon
so has part: feature:745390-745437:1:exon

XP_043356232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:731159-731322:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:733586-733718:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:745390-745437:1:exon

CSDE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CSDE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cold shock domain-containing protein E1 isoform X3
translation: MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKPEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVDGNVQLETGDKINFVIDTNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLEALQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFDGTVTKVIPKVPNKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLHNTFQFTSEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHISDEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHTQSDHRFVGTIEKEATPAKATSPNKSKEKEAEEGIIAYDDCGEKLTVPYQAKDVEGSTNPQIGDKVEFSVCEVKRTGSQTAVSVRMLGRNYNSKRLVGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHAVNGATEEADPTVYTGKVIRPLRSVDPTQTEYQGMIEVMEDGEMKGEVYPFGIVGMANKGDCLQKGETVKFQLCVLGQNEQTMACNITPFRRATVECVKDQ
SIO_010081: CSDE1
subclass of: SO_0000673
so part of: CSDE1
location: join(705870..706068,707124..707233,707601..707693,708329..708426,709732..709813,710866..710994,711102..711227,712347..712559,715098..715238,715317..715475,716209..716316,721169..721344,722262..722374,725488..725607,725889..726067,733586..733588)
location: region:705870-733588:1
so has part: feature:705870-706068:1:exon
so has part: feature:707124-707233:1:exon
so has part: feature:707601-707693:1:exon
so has part: feature:708329-708426:1:exon
so has part: feature:709732-709813:1:exon
so has part: feature:710866-710994:1:exon
so has part: feature:711102-711227:1:exon
so has part: feature:712347-712559:1:exon
so has part: feature:715098-715238:1:exon
so has part: feature:715317-715475:1:exon
so has part: feature:716209-716316:1:exon
so has part: feature:721169-721344:1:exon
so has part: feature:722262-722374:1:exon
so has part: feature:725488-725607:1:exon
so has part: feature:725889-726067:1:exon
so has part: feature:733586-733588:1:exon

XP_038235484.1
type: Protein
SIO_000068: ncbiprotein

position:733588:1
position: 733588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705870-706068:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:707124-707233:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:707601-707693:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:708329-708426:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:709732-709813:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:710866-710994:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:711102-711227:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:712347-712559:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:715098-715238:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:715317-715475:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:716209-716316:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:721169-721344:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:722262-722374:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:725488-725607:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:725889-726067:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:733586-733588:1:exon

LOC122457110
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457110
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(727919..728490)
location: region:727919-728490:-1
so has part: feature:727919-728490:-1:exon
subclass of: SO_0000011

122457110
type: Gene
SIO_000068: ncbigene

position:727919:-1
position: 727919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:728490:-1
position: 728490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:727919-728490:-1:exon

LOC122457110
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457110
product: uncharacterized LOC122457110
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276442.1
SIO_010081: LOC122457110
subclass of: SO_0000673
so part of: LOC122457110
location: complement(join(727919..728007,728206..728490))
location: region:727919-728490:-1
so has part: feature:728206-728490:-1:exon
so has part: feature:727919-728007:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:728206-728490:-1:exon

position:728206:-1
position: 728206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:727919-728007:-1:exon

position:728007:-1
position: 728007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NRAS
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: NRAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 746966..754077
location: region:746966-754077:1
so has part: feature:746966-754077:1:exon
subclass of: SO_0000010

119846218
type: Gene
SIO_000068: ncbigene

position:746966:1
position: 746966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:754077:1
position: 754077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746966-754077:1:exon

NRAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: NRAS
product: NRAS proto-oncogene, GTPase, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500308.1
SIO_010081: NRAS
subclass of: SO_0000673
so part of: NRAS
location: join(746966..747109,747372..747499,749455..749633,750163..750322,751954..752077,752792..754077)
location: region:746966-754077:1
so has part: feature:746966-747109:1:exon
so has part: feature:747372-747499:1:exon
so has part: feature:749455-749633:1:exon
so has part: feature:750163-750322:1:exon
so has part: feature:751954-752077:1:exon
so has part: feature:752792-754077:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:746966-747109:1:exon

position:747109:1
position: 747109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:747372-747499:1:exon

position:747372:1
position: 747372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:747499:1
position: 747499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:749455-749633:1:exon

position:749455:1
position: 749455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:749633:1
position: 749633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:750163-750322:1:exon

position:750163:1
position: 750163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:750322:1
position: 750322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:751954-752077:1:exon

position:751954:1
position: 751954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:752077:1
position: 752077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:752792-754077:1:exon

position:752792:1
position: 752792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NRAS
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: NRAS
product: NRAS proto-oncogene, GTPase, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276441.1
SIO_010081: NRAS
so part of: NRAS
location: join(746966..747112,747374..747499,749455..749633,750163..752077,752792..753374)
location: region:746966-753374:1
so has part: feature:746966-747112:1:exon
so has part: feature:747374-747499:1:exon
so has part: feature:749455-749633:1:exon
so has part: feature:750163-752077:1:exon
so has part: feature:752792-753374:1:exon

position:753374:1
position: 753374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746966-747112:1:exon

position:747112:1
position: 747112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:747374-747499:1:exon

position:747374:1
position: 747374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:749455-749633:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:750163-752077:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:752792-753374:1:exon

NRAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: NRAS
product: NRAS proto-oncogene, GTPase, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379559.2
SIO_010081: NRAS
subclass of: SO_0000673
so part of: NRAS
location: join(746976..747112,747374..747499,749455..749633,750163..750322,751954..752077,752792..754077)
location: region:746976-754077:1
so has part: feature:746976-747112:1:exon
so has part: feature:747374-747499:1:exon
so has part: feature:749455-749633:1:exon
so has part: feature:750163-750322:1:exon
so has part: feature:751954-752077:1:exon
so has part: feature:752792-754077:1:exon

position:746976:1
position: 746976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746976-747112:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:747374-747499:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:749455-749633:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:750163-750322:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:751954-752077:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:752792-754077:1:exon

NRAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: NRAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GTPase NRas
translation: MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAQELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSEDGNQGCMGLSCIVM
SIO_010081: NRAS
subclass of: SO_0000673
so part of: NRAS
location: join(747389..747499,749455..749633,750163..750322,751954..752073)
location: region:747389-752073:1
so has part: feature:747389-747499:1:exon
so has part: feature:749455-749633:1:exon
so has part: feature:750163-750322:1:exon
so has part: feature:751954-752073:1:exon

XP_038235487.1
type: Protein
SIO_000068: ncbiprotein

position:747389:1
position: 747389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:752073:1
position: 752073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:747389-747499:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:749455-749633:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:750163-750322:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:751954-752073:1:exon

NRAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: NRAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GTPase NRas
translation: MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAQELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSEDGNQGCMGLSCIVM
SIO_010081: NRAS
subclass of: SO_0000673
so part of: NRAS
location: join(747389..747499,749455..749633,750163..750322,751954..752073)
location: region:747389-752073:1
so has part: feature:747389-747499:1:exon
so has part: feature:749455-749633:1:exon
so has part: feature:750163-750322:1:exon
so has part: feature:751954-752073:1:exon

XP_043356243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:747389-747499:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:749455-749633:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:750163-750322:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:751954-752073:1:exon

AMPD1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: AMPD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 778092..789719
location: region:778092-789719:1
so has part: feature:778092-789719:1:exon
subclass of: SO_0000010

119846217
type: Gene
SIO_000068: ncbigene

position:778092:1
position: 778092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:789719:1
position: 789719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:778092-789719:1:exon

AMPD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: AMPD1
product: adenosine monophosphate deaminase 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500298.1
SIO_010081: AMPD1
subclass of: SO_0000673
so part of: AMPD1
location: join(778092..778229,779369..779630,780901..781066,782073..782292,783165..783294,783741..783935,784245..784376,784510..784673,784855..784981,785511..785677,787598..787718,788404..788577,788870..788980,789330..789719)
location: region:778092-789719:1
so has part: feature:778092-778229:1:exon
so has part: feature:779369-779630:1:exon
so has part: feature:780901-781066:1:exon
so has part: feature:782073-782292:1:exon
so has part: feature:783165-783294:1:exon
so has part: feature:783741-783935:1:exon
so has part: feature:784245-784376:1:exon
so has part: feature:784510-784673:1:exon
so has part: feature:784855-784981:1:exon
so has part: feature:785511-785677:1:exon
so has part: feature:787598-787718:1:exon
so has part: feature:788404-788577:1:exon
so has part: feature:788870-788980:1:exon
so has part: feature:789330-789719:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:778092-778229:1:exon

position:778229:1
position: 778229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:779369-779630:1:exon

position:779369:1
position: 779369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:779630:1
position: 779630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:780901-781066:1:exon

position:780901:1
position: 780901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:781066:1
position: 781066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:782073-782292:1:exon

position:782073:1
position: 782073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:782292:1
position: 782292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:783165-783294:1:exon

position:783165:1
position: 783165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:783294:1
position: 783294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:783741-783935:1:exon

position:783741:1
position: 783741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:783935:1
position: 783935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:784245-784376:1:exon

position:784245:1
position: 784245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:784376:1
position: 784376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:784510-784673:1:exon

position:784510:1
position: 784510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:784673:1
position: 784673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:784855-784981:1:exon

position:784855:1
position: 784855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:784981:1
position: 784981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:785511-785677:1:exon

position:785511:1
position: 785511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:785677:1
position: 785677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:787598-787718:1:exon

position:787598:1
position: 787598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:787718:1
position: 787718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:788404-788577:1:exon

position:788404:1
position: 788404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:788577:1
position: 788577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:788870-788980:1:exon

position:788870:1
position: 788870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:788980:1
position: 788980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:789330-789719:1:exon

position:789330:1
position: 789330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AMPD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: AMPD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AMP deaminase 1
translation: MAHPSATRLSTIDEFIAASPLYQAVPDFQRVQISGDYASGVTIEDFEVVCRGLYRALCIREKYMQKSFQRFPKTPSQYLRNIEGEVWRADDGCAPVFTPPVKEGEDPFRLDNLPEDLGYCIRMQGGVVYVYADAVAARRGEPKDLPYPNLEDFLDDMNFLLALIAQGPMKTYTHRRLKFLSSKFNVHEMLNEMEELKELKNNPHRDFYNCRKVDTHIHAAACMNQKHLLHFIKKSYRVDAERVVYDAKGKKLTLKQLFQQLNLHPYDLTVDSLDVHAGRQTFQRFDKFNDKYNPVGASELRDLYLKTENTIDGEYFATIIKEVSSDLEDAKYQHAEPRLSIYGRSPEEWPKLASWFNRHRVYSPNMKWMIQVPRIYDVFRAKKFLPHFGKMLENIFVPVFEATVCPQDNKELSVFLQHQITGFDSVDDESKHSGHMFSTKSPKPDKWSHEKNPSYTYYLYYMYANIMVLNNLRRERGMNTFLFRPHCGEAGAITHLLAAFMTADNISHGLNLKKSPVLQYLYFLAQIPIAMSPLSNNSLFLEYAKNPLLDFHQKGLMVSLSTDDPMQFHYTKEPLMEEYAIAAQVFKLSTCDMCEIARNSVLQCGLSHEEKSKFLGENYREEGPQGNNIWKTNVPQIRMAYRYETWCYELNLIAEGLKTPE
SIO_010081: AMPD1
subclass of: SO_0000673
so part of: AMPD1
location: join(779511..779630,780901..781066,782073..782292,783165..783294,783741..783935,784245..784376,784510..784673,784855..784981,785511..785677,787598..787718,788404..788577,788870..788980,789330..789488)
location: region:779511-789488:1
so has part: feature:779511-779630:1:exon
so has part: feature:780901-781066:1:exon
so has part: feature:782073-782292:1:exon
so has part: feature:783165-783294:1:exon
so has part: feature:783741-783935:1:exon
so has part: feature:784245-784376:1:exon
so has part: feature:784510-784673:1:exon
so has part: feature:784855-784981:1:exon
so has part: feature:785511-785677:1:exon
so has part: feature:787598-787718:1:exon
so has part: feature:788404-788577:1:exon
so has part: feature:788870-788980:1:exon
so has part: feature:789330-789488:1:exon

XP_043356233.1
type: Protein
SIO_000068: ncbiprotein

position:779511:1
position: 779511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:789488:1
position: 789488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:779511-779630:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:780901-781066:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:782073-782292:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:783165-783294:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:783741-783935:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:784245-784376:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:784510-784673:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:784855-784981:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:785511-785677:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:787598-787718:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:788404-788577:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:788870-788980:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:789330-789488:1:exon

DENND2C
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: DENND2C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 794821..840770
location: region:794821-840770:1
so has part: feature:794821-840770:1:exon
subclass of: SO_0000010

119846453
type: Gene
SIO_000068: ncbigene

position:794821:1
position: 794821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:840770:1
position: 840770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:794821-840770:1:exon

DENND2C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: DENND2C
product: DENN domain containing 2C
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons
transcript id: XM_038380130.2
SIO_010081: DENND2C
subclass of: SO_0000673
so part of: DENND2C
location: join(794821..795030,812928..813095,815536..816543,818514..818662,819194..819306,820343..820501,823649..823746,824507..824550,826065..826252,830521..830630,831285..831354,831820..831897,832814..832954,833360..833508,834114..834291,834933..834974,837247..837352,838023..838262,838746..838832,839318..840770)
location: region:794821-840770:1
so has part: feature:794821-795030:1:exon
so has part: feature:812928-813095:1:exon
so has part: feature:815536-816543:1:exon
so has part: feature:818514-818662:1:exon
so has part: feature:819194-819306:1:exon
so has part: feature:820343-820501:1:exon
so has part: feature:823649-823746:1:exon
so has part: feature:824507-824550:1:exon
so has part: feature:826065-826252:1:exon
so has part: feature:830521-830630:1:exon
so has part: feature:831285-831354:1:exon
so has part: feature:831820-831897:1:exon
so has part: feature:832814-832954:1:exon
so has part: feature:833360-833508:1:exon
so has part: feature:834114-834291:1:exon
so has part: feature:834933-834974:1:exon
so has part: feature:837247-837352:1:exon
so has part: feature:838023-838262:1:exon
so has part: feature:838746-838832:1:exon
so has part: feature:839318-840770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:794821-795030:1:exon

position:795030:1
position: 795030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:812928-813095:1:exon

position:812928:1
position: 812928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:813095:1
position: 813095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:815536-816543:1:exon

position:815536:1
position: 815536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:816543:1
position: 816543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:818514-818662:1:exon

position:818514:1
position: 818514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:818662:1
position: 818662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:819194-819306:1:exon

position:819194:1
position: 819194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819306:1
position: 819306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:820343-820501:1:exon

position:820343:1
position: 820343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:820501:1
position: 820501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:823649-823746:1:exon

position:823649:1
position: 823649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:823746:1
position: 823746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:824507-824550:1:exon

position:824507:1
position: 824507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:824550:1
position: 824550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:826065-826252:1:exon

position:826065:1
position: 826065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:826252:1
position: 826252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:830521-830630:1:exon

position:830521:1
position: 830521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:830630:1
position: 830630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:831285-831354:1:exon

position:831285:1
position: 831285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:831354:1
position: 831354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:831820-831897:1:exon

position:831820:1
position: 831820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:831897:1
position: 831897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:832814-832954:1:exon

position:832814:1
position: 832814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:832954:1
position: 832954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:833360-833508:1:exon

position:833360:1
position: 833360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:833508:1
position: 833508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:834114-834291:1:exon

position:834114:1
position: 834114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834291:1
position: 834291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:834933-834974:1:exon

position:834933:1
position: 834933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834974:1
position: 834974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:837247-837352:1:exon

position:837247:1
position: 837247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837352:1
position: 837352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:838023-838262:1:exon

position:838023:1
position: 838023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838262:1
position: 838262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:838746-838832:1:exon

position:838746:1
position: 838746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838832:1
position: 838832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:839318-840770:1:exon

position:839318:1
position: 839318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DENND2C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: DENND2C
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: DENN domain-containing protein 2C
translation: MHPTGTPDGGFSRCAVQTLSRSHCRNIKQKISQWEGRTRGDCSEDRQQPKDFGVQYDHGCEALPKAKPQGCGNDGKAGLANSKSLGLDFREKGRNHSQSEGDSERDGDCSTSEILRPKMRTCCPISRAEENGDWRGGLLDPEQMLPPGNFYTSRGLWRNIEAVPPDKVLAMALELKRKRESCGSTERELYAGGVEPLNVTERSFENIYSEAEGQETRPAAIPPPKPRRTFRYLSERDQASSGREKPLEGQCKDSPTGSSHKPEQREANGKIRGRSKRKSFEFEDIQGFRSRMAATSSQKLHEELNSSSGSRLYYTQSEDNIYEDIIYPAKENLYEDIKVLPLPLWRVPSAWKLPPSKNAFKPPKLPPKPAFLHRKTLELKAARACLRXEDTTLPVTLTEWKLFRAGEAAGRKRKNLPQLVLKIQEIFESKRGKKRVKLLAYTGKEAPPTKGETSGNEXETENLPKSHHKRLLQVQSTSKRNPHYQTLERDLIEFQEQQLFELFVVVSLQKKPSETTYTPQVIQQFPSKPEHPFRQSKDTEERLKVIPKFCFPDPKAWLPTSELKSETFSFVLTGEDGSRWFGYCKKLLPEGKGKRLPEVYCMVSRLGCFNLFSKILDEVEKRREMSPALVHPFMRSVMEAPFPAPGRTITVKSFLPGAGNEVIELCRPLDSRLEHVDFERLFKCLSVCHLIRVCASLLLERRVIFVADNLSTLSKCGHAVVATLYPFTWQHTYIPVLPASMIDIVCSPTPFLIGILSCSLPQLQDLPIEEVLIVDLCADNFLQQVSDEDEILPHKLQAALVQILEERNEILSQEQIYTQGNVTLNSLVSEAFVQFFVEIVGHYSLHMNVTEKGERVFQREPFRKSHTSRNVRHFLDLFMETQMFAGFIQDRELRKSGVKGLFEVRALEYLETIPETEPSGMNKILRSLGSKIKFLQRK
SIO_010081: DENND2C
subclass of: SO_0000673
so part of: DENND2C
location: join(815714..816543,818514..818662,819194..819306,820343..820501,823649..823746,824507..824550,826065..826252,830521..830630,831285..831354,831820..831897,832814..832954,833360..833508,834114..834291,834933..834974,837247..837352,838023..838262,838746..838832,839318..839349)
location: region:815714-839349:1
so has part: feature:815714-816543:1:exon
so has part: feature:818514-818662:1:exon
so has part: feature:819194-819306:1:exon
so has part: feature:820343-820501:1:exon
so has part: feature:823649-823746:1:exon
so has part: feature:824507-824550:1:exon
so has part: feature:826065-826252:1:exon
so has part: feature:830521-830630:1:exon
so has part: feature:831285-831354:1:exon
so has part: feature:831820-831897:1:exon
so has part: feature:832814-832954:1:exon
so has part: feature:833360-833508:1:exon
so has part: feature:834114-834291:1:exon
so has part: feature:834933-834974:1:exon
so has part: feature:837247-837352:1:exon
so has part: feature:838023-838262:1:exon
so has part: feature:838746-838832:1:exon
so has part: feature:839318-839349:1:exon

XP_038236058.1
type: Protein
SIO_000068: ncbiprotein

position:815714:1
position: 815714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:839349:1
position: 839349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:815714-816543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:818514-818662:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:819194-819306:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:820343-820501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:823649-823746:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:824507-824550:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:826065-826252:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:830521-830630:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:831285-831354:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:831820-831897:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:832814-832954:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:833360-833508:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:834114-834291:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:834933-834974:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:837247-837352:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:838023-838262:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:838746-838832:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:839318-839349:1:exon

BCAS2
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: BCAS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 841850..850174
location: region:841850-850174:1
so has part: feature:841850-850174:1:exon
subclass of: SO_0000010

119846440
type: Gene
SIO_000068: ncbigene

position:841850:1
position: 841850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:850174:1
position: 850174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:841850-850174:1:exon

BCAS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: BCAS2
product: BCAS2 pre-mRNA processing factor
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380112.2
SIO_010081: BCAS2
subclass of: SO_0000673
so part of: BCAS2
location: join(841850..842245,843261..843353,843616..843686,845626..845787,847761..847811,849103..849183,849754..850174)
location: region:841850-850174:1
so has part: feature:841850-842245:1:exon
so has part: feature:843261-843353:1:exon
so has part: feature:843616-843686:1:exon
so has part: feature:845626-845787:1:exon
so has part: feature:847761-847811:1:exon
so has part: feature:849103-849183:1:exon
so has part: feature:849754-850174:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:841850-842245:1:exon

position:842245:1
position: 842245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:843261-843353:1:exon

position:843261:1
position: 843261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:843353:1
position: 843353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:843616-843686:1:exon

position:843616:1
position: 843616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:843686:1
position: 843686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:845626-845787:1:exon

position:845626:1
position: 845626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845787:1
position: 845787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:847761-847811:1:exon

position:847761:1
position: 847761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:847811:1
position: 847811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:849103-849183:1:exon

position:849103:1
position: 849103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849183:1
position: 849183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:849754-850174:1:exon

position:849754:1
position: 849754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BCAS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: BCAS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor SPF27
translation: MSGSGPGPGLGLGLVAGEVAVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLPTPDYSAFETEIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNEHLVHMIEQAQKELQKLRKNIQDLNWQRKNMQLTAGSKLREMESTWVSLVSKNYEIEQTIVQLENEILQIKQQHGEANKENIEQDF
SIO_010081: BCAS2
subclass of: SO_0000673
so part of: BCAS2
location: join(842129..842245,843261..843353,843616..843686,845626..845787,847761..847811,849103..849183,849754..849880)
location: region:842129-849880:1
so has part: feature:842129-842245:1:exon
so has part: feature:843261-843353:1:exon
so has part: feature:843616-843686:1:exon
so has part: feature:845626-845787:1:exon
so has part: feature:847761-847811:1:exon
so has part: feature:849103-849183:1:exon
so has part: feature:849754-849880:1:exon

XP_038236040.1
type: Protein
SIO_000068: ncbiprotein

position:842129:1
position: 842129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849880:1
position: 849880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:842129-842245:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:843261-843353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:843616-843686:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:845626-845787:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:847761-847811:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:849103-849183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:849754-849880:1:exon

TRIM33
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: TRIM33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 859910..934800
location: region:859910-934800:1
so has part: feature:859910-934800:1:exon
subclass of: SO_0000010

119846309
type: Gene
SIO_000068: ncbigene

position:859910:1
position: 859910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:934800:1
position: 934800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:859910-934800:1:exon

TRIM33
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TRIM33
product: tripartite motif containing 33, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379746.2
SIO_010081: TRIM33
subclass of: SO_0000673
so part of: TRIM33
location: join(859910..860657,886885..887003,887193..887340,889959..890091,897686..897802,898551..898665,903157..903303,909783..909900,914107..914351,914639..914803,915841..916041,919616..919748,922742..922805,923219..923378,924281..924627,925154..925277,926204..926278,927000..927152,929520..929570,929669..934800)
location: region:859910-934800:1
so has part: feature:859910-860657:1:exon
so has part: feature:886885-887003:1:exon
so has part: feature:887193-887340:1:exon
so has part: feature:889959-890091:1:exon
so has part: feature:897686-897802:1:exon
so has part: feature:898551-898665:1:exon
so has part: feature:903157-903303:1:exon
so has part: feature:909783-909900:1:exon
so has part: feature:914107-914351:1:exon
so has part: feature:914639-914803:1:exon
so has part: feature:915841-916041:1:exon
so has part: feature:919616-919748:1:exon
so has part: feature:922742-922805:1:exon
so has part: feature:923219-923378:1:exon
so has part: feature:924281-924627:1:exon
so has part: feature:925154-925277:1:exon
so has part: feature:926204-926278:1:exon
so has part: feature:927000-927152:1:exon
so has part: feature:929520-929570:1:exon
so has part: feature:929669-934800:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:859910-860657:1:exon

position:860657:1
position: 860657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:886885-887003:1:exon

position:886885:1
position: 886885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:887003:1
position: 887003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:887193-887340:1:exon

position:887193:1
position: 887193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:887340:1
position: 887340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:889959-890091:1:exon

position:889959:1
position: 889959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:890091:1
position: 890091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:897686-897802:1:exon

position:897686:1
position: 897686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897802:1
position: 897802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:898551-898665:1:exon

position:898551:1
position: 898551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:898665:1
position: 898665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:903157-903303:1:exon

position:903157:1
position: 903157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:903303:1
position: 903303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:909783-909900:1:exon

position:909783:1
position: 909783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:909900:1
position: 909900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:914107-914351:1:exon

position:914107:1
position: 914107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:914351:1
position: 914351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:914639-914803:1:exon

position:914639:1
position: 914639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:914803:1
position: 914803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:915841-916041:1:exon

position:915841:1
position: 915841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:916041:1
position: 916041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:919616-919748:1:exon

position:919616:1
position: 919616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:919748:1
position: 919748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:922742-922805:1:exon

position:922742:1
position: 922742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:922805:1
position: 922805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:923219-923378:1:exon

position:923219:1
position: 923219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:923378:1
position: 923378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:924281-924627:1:exon

position:924281:1
position: 924281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:924627:1
position: 924627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:925154-925277:1:exon

position:925154:1
position: 925154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:925277:1
position: 925277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:926204-926278:1:exon

position:926204:1
position: 926204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:926278:1
position: 926278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:927000-927152:1:exon

position:927000:1
position: 927000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:927152:1
position: 927152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:929520-929570:1:exon

position:929520:1
position: 929520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:929570:1
position: 929570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:929669-934800:1:exon

position:929669:1
position: 929669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRIM33
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TRIM33
product: tripartite motif containing 33, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500309.1
SIO_010081: TRIM33
subclass of: SO_0000673
so part of: TRIM33
location: join(859910..860657,886885..887003,887193..887340,889959..890091,897686..897802,898551..898665,903157..903303,909783..909900,914107..914351,914639..914803,915841..916041,919616..919748,922742..922805,923219..923378,924281..924627,925154..925277,926204..926278,927000..927152,929669..934800)
location: region:859910-934800:1
so has part: feature:859910-860657:1:exon
so has part: feature:886885-887003:1:exon
so has part: feature:887193-887340:1:exon
so has part: feature:889959-890091:1:exon
so has part: feature:897686-897802:1:exon
so has part: feature:898551-898665:1:exon
so has part: feature:903157-903303:1:exon
so has part: feature:909783-909900:1:exon
so has part: feature:914107-914351:1:exon
so has part: feature:914639-914803:1:exon
so has part: feature:915841-916041:1:exon
so has part: feature:919616-919748:1:exon
so has part: feature:922742-922805:1:exon
so has part: feature:923219-923378:1:exon
so has part: feature:924281-924627:1:exon
so has part: feature:925154-925277:1:exon
so has part: feature:926204-926278:1:exon
so has part: feature:927000-927152:1:exon
so has part: feature:929669-934800:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:859910-860657:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:886885-887003:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:887193-887340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:889959-890091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897686-897802:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:898551-898665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903157-903303:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:909783-909900:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914107-914351:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:914639-914803:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:915841-916041:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:919616-919748:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:922742-922805:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:923219-923378:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:924281-924627:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:925154-925277:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:926204-926278:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:927000-927152:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:929669-934800:1:exon

TRIM33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TRIM33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM33 isoform X1
translation: MRTRRCSAGPRRTRSLRSRVHARYAVRVPLKRRVGRALHAARALPPQRVGCAPRSATCPASPLRRLPRTYRARARSVCGSPVTRGVRAQARSCACAERGVGFKGGNMAENKGGGGEGAAEPGPDGGGQEPAAASPSGSAPPEERESPGAAAEKGPAEAEAEAAAATGPGPGPGPSPVPPLPAAAPGPLSLLDTCAVCAQSLQSRREAEPKLLPCLHSFCRRCLPEPERQLSVPVPGGANGDVQQVGVIRCPICRQECRQIDLVDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHMIRKKEDVSSEAVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIENLLAKLLEKKNYVNFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLIQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIENKPTPGYTPNVVVGQVPPGTNHISKAPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMGQPAGPLPRQAGPQMLQQQPPRLISMQTMQRGNLNCGAFQAHQMRMAQNAARIPGIPRHNGPQYSMMQPHLQRQHSNPGHAGPFPVVSVHNTTINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPIQLEDAGSSNLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSTGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTGINFKSDHVKVKQEPGTEEEICSFSGAVKQEKAEDGRRSACMLSSPESSLTPPLSTNLHLESELEALGSLENHVKTEPTDLSESCKQSGHSLVNGKSPVRSLMHRSARIGGEGNNKEDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLSKPEVEYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQTPDDFVADVRLIFKNCERFNEMMKVVQVYAETQEINLKADSEVAQAGKAVALYFEDKLTDIYPDRTFQPLPEFEQEEDDGEITEDSDEDFIQPRRKRLKSDERPVHIK
SIO_010081: TRIM33
subclass of: SO_0000673
so part of: TRIM33
location: join(859925..860657,886885..887003,887193..887340,889959..890091,897686..897802,898551..898665,903157..903303,909783..909900,914107..914351,914639..914803,915841..916041,919616..919748,922742..922805,923219..923378,924281..924627,925154..925277,926204..926278,927000..927152,929520..929570,929669..929881)
location: region:859925-929881:1
so has part: feature:859925-860657:1:exon
so has part: feature:886885-887003:1:exon
so has part: feature:887193-887340:1:exon
so has part: feature:889959-890091:1:exon
so has part: feature:897686-897802:1:exon
so has part: feature:898551-898665:1:exon
so has part: feature:903157-903303:1:exon
so has part: feature:909783-909900:1:exon
so has part: feature:914107-914351:1:exon
so has part: feature:914639-914803:1:exon
so has part: feature:915841-916041:1:exon
so has part: feature:919616-919748:1:exon
so has part: feature:922742-922805:1:exon
so has part: feature:923219-923378:1:exon
so has part: feature:924281-924627:1:exon
so has part: feature:925154-925277:1:exon
so has part: feature:926204-926278:1:exon
so has part: feature:927000-927152:1:exon
so has part: feature:929520-929570:1:exon
so has part: feature:929669-929881:1:exon

XP_038235674.2
type: Protein
SIO_000068: ncbiprotein

position:859925:1
position: 859925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:929881:1
position: 929881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:859925-860657:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:886885-887003:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:887193-887340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:889959-890091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897686-897802:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:898551-898665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903157-903303:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:909783-909900:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914107-914351:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:914639-914803:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:915841-916041:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:919616-919748:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:922742-922805:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:923219-923378:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:924281-924627:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:925154-925277:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:926204-926278:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:927000-927152:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:929520-929570:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:929669-929881:1:exon

TRIM33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TRIM33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM33 isoform X2
translation: MRTRRCSAGPRRTRSLRSRVHARYAVRVPLKRRVGRALHAARALPPQRVGCAPRSATCPASPLRRLPRTYRARARSVCGSPVTRGVRAQARSCACAERGVGFKGGNMAENKGGGGEGAAEPGPDGGGQEPAAASPSGSAPPEERESPGAAAEKGPAEAEAEAAAATGPGPGPGPSPVPPLPAAAPGPLSLLDTCAVCAQSLQSRREAEPKLLPCLHSFCRRCLPEPERQLSVPVPGGANGDVQQVGVIRCPICRQECRQIDLVDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHMIRKKEDVSSEAVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIENLLAKLLEKKNYVNFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLIQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIENKPTPGYTPNVVVGQVPPGTNHISKAPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMGQPAGPLPRQAGPQMLQQQPPRLISMQTMQRGNLNCGAFQAHQMRMAQNAARIPGIPRHNGPQYSMMQPHLQRQHSNPGHAGPFPVVSVHNTTINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPIQLEDAGSSNLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSTGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTGINFKSDHVKVKQEPGTEEEICSFSGAVKQEKAEDGRRSACMLSSPESSLTPPLSTNLHLESELEALGSLENHVKTEPTDLSESCKQSGHSLVNGKSPVRSLMHRSARIGGEGNNKEDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLSKPEVEYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQTPDDFVADVRLIFKNCERFNEADSEVAQAGKAVALYFEDKLTDIYPDRTFQPLPEFEQEEDDGEITEDSDEDFIQPRRKRLKSDERPVHIK
SIO_010081: TRIM33
subclass of: SO_0000673
so part of: TRIM33
location: join(859925..860657,886885..887003,887193..887340,889959..890091,897686..897802,898551..898665,903157..903303,909783..909900,914107..914351,914639..914803,915841..916041,919616..919748,922742..922805,923219..923378,924281..924627,925154..925277,926204..926278,927000..927152,929669..929881)
location: region:859925-929881:1
so has part: feature:859925-860657:1:exon
so has part: feature:886885-887003:1:exon
so has part: feature:887193-887340:1:exon
so has part: feature:889959-890091:1:exon
so has part: feature:897686-897802:1:exon
so has part: feature:898551-898665:1:exon
so has part: feature:903157-903303:1:exon
so has part: feature:909783-909900:1:exon
so has part: feature:914107-914351:1:exon
so has part: feature:914639-914803:1:exon
so has part: feature:915841-916041:1:exon
so has part: feature:919616-919748:1:exon
so has part: feature:922742-922805:1:exon
so has part: feature:923219-923378:1:exon
so has part: feature:924281-924627:1:exon
so has part: feature:925154-925277:1:exon
so has part: feature:926204-926278:1:exon
so has part: feature:927000-927152:1:exon
so has part: feature:929669-929881:1:exon

XP_043356244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:859925-860657:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:886885-887003:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:887193-887340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:889959-890091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897686-897802:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:898551-898665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903157-903303:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:909783-909900:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914107-914351:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:914639-914803:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:915841-916041:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:919616-919748:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:922742-922805:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:923219-923378:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:924281-924627:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:925154-925277:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:926204-926278:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:927000-927152:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:929669-929881:1:exon

LOC122457127
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(939340..947064)
location: region:939340-947064:-1
so has part: feature:939340-947064:-1:exon
subclass of: SO_0000011

122457127
type: Gene
SIO_000068: ncbigene

position:939340:-1
position: 939340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:947064:-1
position: 947064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:939340-947064:-1:exon

LOC122457127
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457127
product: uncharacterized LOC122457127
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_006276477.1
SIO_010081: LOC122457127
subclass of: SO_0000673
so part of: LOC122457127
location: complement(join(939340..939451,945465..945469,947053..947064))
location: region:939340-947064:-1
so has part: feature:947053-947064:-1:exon
so has part: feature:945465-945469:-1:exon
so has part: feature:939340-939451:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:947053-947064:-1:exon

position:947053:-1
position: 947053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:945465-945469:-1:exon

position:945465:-1
position: 945465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:945469:-1
position: 945469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:939340-939451:-1:exon

position:939451:-1
position: 939451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SYT6
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: SYT6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1010573..1099270
location: region:1010573-1099270:1
so has part: feature:1010573-1099270:1:exon
subclass of: SO_0000010

119846385
type: Gene
SIO_000068: ncbigene

position:1010573:1
position: 1010573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099270:1
position: 1099270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1010573-1099270:1:exon

SYT6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SYT6
product: synaptotagmin 6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379998.2
SIO_010081: SYT6
subclass of: SO_0000673
so part of: SYT6
location: join(1010573..1011131,1050135..1050465,1055178..1055736,1085015..1085135,1087627..1087798,1088515..1088665,1098087..1099270)
location: region:1010573-1099270:1
so has part: feature:1010573-1011131:1:exon
so has part: feature:1050135-1050465:1:exon
so has part: feature:1055178-1055736:1:exon
so has part: feature:1085015-1085135:1:exon
so has part: feature:1087627-1087798:1:exon
so has part: feature:1088515-1088665:1:exon
so has part: feature:1098087-1099270:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1010573-1011131:1:exon

position:1011131:1
position: 1011131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1050135-1050465:1:exon

position:1050135:1
position: 1050135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1050465:1
position: 1050465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1055178-1055736:1:exon

position:1055178:1
position: 1055178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1055736:1
position: 1055736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1085015-1085135:1:exon

position:1085015:1
position: 1085015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1085135:1
position: 1085135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1087627-1087798:1:exon

position:1087627:1
position: 1087627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1087798:1
position: 1087798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1088515-1088665:1:exon

position:1088515:1
position: 1088515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088665:1
position: 1088665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1098087-1099270:1:exon

position:1098087:1
position: 1098087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SYT6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SYT6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptotagmin-6
translation: MSATKEDSRCQKAVRIVTDLCQKKSLPSLDLDTCRGFLLLPSDQSLSISEPELSISLLAVIVSVCGLALVAVFLFLFWKLCWVPWRNKAISSNVSQSEAACNQETMADKLKDTGTLGFLEAAVKISHTSPDIPAEVQMSMKDHIMRHARLQRQTTEPASSTRHISFKRHLPRQMHVSSMDYGTDLPLEAEQPTSIGRIKPELYKQKSVDSEDPKKEAAKTCGKINFTLKYDYENETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKRKFQTRVHRKTLNPTFNESFHFPVPYEELTSRKLHLSVFDFDRFSRHDMIGEVILENLFEASDISRETSIWKDIQYATTESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLNPTYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGGCRVGISAEGLGRDHWNEMLAYPRKPIAHWHPLVEVKKSFKEWQGRAASFDSQGSCPSPKPPPTP
SIO_010081: SYT6
subclass of: SO_0000673
so part of: SYT6
location: join(1010978..1011131,1050135..1050465,1055178..1055736,1085015..1085135,1087627..1087798,1088515..1088665,1098087..1098158)
location: region:1010978-1098158:1
so has part: feature:1010978-1011131:1:exon
so has part: feature:1050135-1050465:1:exon
so has part: feature:1055178-1055736:1:exon
so has part: feature:1085015-1085135:1:exon
so has part: feature:1087627-1087798:1:exon
so has part: feature:1088515-1088665:1:exon
so has part: feature:1098087-1098158:1:exon

XP_038235926.1
type: Protein
SIO_000068: ncbiprotein

position:1010978:1
position: 1010978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1098158:1
position: 1098158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1010978-1011131:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1050135-1050465:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1055178-1055736:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1085015-1085135:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1087627-1087798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1088515-1088665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1098087-1098158:1:exon

OLFML3
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: OLFML3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1167472..1173900)
location: region:1167472-1173900:-1
so has part: feature:1167472-1173900:-1:exon
subclass of: SO_0000010

119846424
type: Gene
SIO_000068: ncbigene

position:1167472:-1
position: 1167472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1173900:-1
position: 1173900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1167472-1173900:-1:exon

OLFML3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: OLFML3
product: olfactomedin like 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038380091.2
SIO_010081: OLFML3
subclass of: SO_0000673
so part of: OLFML3
location: complement(join(1167472..1170982,1172735..1173020,1173628..1173900))
location: region:1167472-1173900:-1
so has part: feature:1173628-1173900:-1:exon
so has part: feature:1172735-1173020:-1:exon
so has part: feature:1167472-1170982:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1173628-1173900:-1:exon

position:1173628:-1
position: 1173628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1172735-1173020:-1:exon

position:1172735:-1
position: 1172735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1173020:-1
position: 1173020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1167472-1170982:-1:exon

position:1170982:-1
position: 1170982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OLFML3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: OLFML3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactomedin-like protein 3
translation: MAPRLGLLLALLLAGAISAQQQQFMEYMERRFGALEERISQWHDQSSRYSTELREFKNQVITMLENMEKEQDRLRTEVENTAVRVDRLEREVDYLETQNPAPPCVEVDEKLMENQVSTAKKRKNEKYDKLTDCSDTISQVKAMKILKKFGSSAGLWTKDPVGSSEKIYVFDGSSNDTVYVFPRMREFTLFSATRKAARIKLPYPWVGTGHLVYGGHLYYIRQQGTFQVIKFSLANKTIVDSSVFPVEEQVPVFGLSAFNYIDIAADEEGLWAIYATRENEKNICLAKLDPVSLDIEQMWDTPCPRENAESAFVICGALYVVYNTRLPSRSRVQCVFDVSGAMTPEDAALVYFPKRYGSHSSMKYNPKERQIYAWDDGYQIIYRMEMKKKLEI
SIO_010081: OLFML3
subclass of: SO_0000673
so part of: OLFML3
location: complement(join(1170198..1170982,1172735..1173020,1173628..1173735))
location: region:1170198-1173735:-1
so has part: feature:1173628-1173735:-1:exon
so has part: feature:1172735-1173020:-1:exon
so has part: feature:1170198-1170982:-1:exon

XP_038236019.1
type: Protein
SIO_000068: ncbiprotein

position:1170198:-1
position: 1170198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1173735:-1
position: 1173735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1173628-1173735:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1172735-1173020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170198-1170982:-1:exon

HIPK1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: HIPK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1179747..1217358)
location: region:1179747-1217358:-1
so has part: feature:1179747-1217358:-1:exon
subclass of: SO_0000010

119846413
type: Gene
SIO_000068: ncbigene

position:1179747:-1
position: 1179747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1217358:-1
position: 1217358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179747-1217358:-1:exon

HIPK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: HIPK1
product: homeodomain interacting protein kinase 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500317.1
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1179747..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187929,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213133,1217234..1217358))
location: region:1179747-1217358:-1
so has part: feature:1217234-1217358:-1:exon
so has part: feature:1212056-1213133:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187929:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1179747-1184417:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1217234-1217358:-1:exon

position:1217234:-1
position: 1217234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1212056-1213133:-1:exon

position:1212056:-1
position: 1212056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1213133:-1
position: 1213133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1203445-1203568:-1:exon

position:1203445:-1
position: 1203445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1203568:-1
position: 1203568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1198973-1199092:-1:exon

position:1198973:-1
position: 1198973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1199092:-1
position: 1199092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1197821-1197907:-1:exon

position:1197821:-1
position: 1197821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1197907:-1
position: 1197907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1196773-1196957:-1:exon

position:1196773:-1
position: 1196773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1196957:-1
position: 1196957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1196151-1196313:-1:exon

position:1196151:-1
position: 1196151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1196313:-1
position: 1196313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1195193-1195415:-1:exon

position:1195193:-1
position: 1195193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1195415:-1
position: 1195415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1192766-1192887:-1:exon

position:1192766:-1
position: 1192766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1192887:-1
position: 1192887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1190829-1190963:-1:exon

position:1190829:-1
position: 1190829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1190963:-1
position: 1190963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1187787-1187929:-1:exon

position:1187787:-1
position: 1187787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1187929:-1
position: 1187929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1187253-1187435:-1:exon

position:1187253:-1
position: 1187253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1187435:-1
position: 1187435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1186484-1186696:-1:exon

position:1186484:-1
position: 1186484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1186696:-1
position: 1186696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1185894-1186132:-1:exon

position:1185894:-1
position: 1185894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1186132:-1
position: 1186132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1185349-1185485:-1:exon

position:1185349:-1
position: 1185349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1185485:-1
position: 1185485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1179747-1184417:-1:exon

position:1184417:-1
position: 1184417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HIPK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: HIPK1
product: homeodomain interacting protein kinase 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380061.2
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1179747..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187926,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213133,1216844..1216989))
location: region:1179747-1216989:-1
so has part: feature:1216844-1216989:-1:exon
so has part: feature:1212056-1213133:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187926:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1179747-1184417:-1:exon

position:1216989:-1
position: 1216989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1216844-1216989:-1:exon

position:1216844:-1
position: 1216844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1212056-1213133:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1203445-1203568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1198973-1199092:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1197821-1197907:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1196773-1196957:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1196151-1196313:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1195193-1195415:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1192766-1192887:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1190829-1190963:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1187787-1187926:-1:exon

position:1187926:-1
position: 1187926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1187253-1187435:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1186484-1186696:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1185894-1186132:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1185349-1185485:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1179747-1184417:-1:exon

HIPK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: HIPK1
product: homeodomain interacting protein kinase 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500316.1
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1179747..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187929,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213133,1216844..1216988))
location: region:1179747-1216988:-1
so has part: feature:1216844-1216988:-1:exon
so has part: feature:1212056-1213133:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187929:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1179747-1184417:-1:exon

position:1216988:-1
position: 1216988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1216844-1216988:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1212056-1213133:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1203445-1203568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1198973-1199092:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1197821-1197907:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1196773-1196957:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1196151-1196313:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1195193-1195415:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1192766-1192887:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1190829-1190963:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1187787-1187929:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1187253-1187435:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1186484-1186696:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1185894-1186132:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1185349-1185485:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1179747-1184417:-1:exon

HIPK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: HIPK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeodomain-interacting protein kinase 1 isoform X2
translation: MASQLQVFSPPSVSSSAFCSAKKLKVEPSGWDVSGQGSSDKYYTRSKTLPAAQGQASSSRQVANFSIPAYDQNLLLPAPSVEHIVVTAADSTGSGATTSFQNSQTFTHRSNVSLLEPYQKCGLKRKSEEVDSNGSVQIIDEHPPLMLQNRPAVGAAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKYIRPILQQVATALMKLKSLGLIHADLKPENIMLVDPIRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLLSAGTKTSRFFNRDPNLGYPLWRLKTPEEHELETGIKSKEARKYIFNCLDDMAQVNMSTDLEGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHSFVTMTHLLDFPHSNHVKSCFQNMEICKRRVNMYDTINQIKSPFTTHVAPNTSTNLTMSFSNQLNTVHNQASVLASNSTAAATLSLANSDVSLLNYQSALYPSSAAPVAGVAQQSVSLQPGTTQICTQTDPFQQTFIVCPPAFQTGLQATAKHSGFPVRMENAVPIVPQAPTAQPLQIQSGVLTQGSCTPLMVATLHPQVATITPQYAVPFTLNCAAGRPALVEQTAAVLAWPGGTQQILLPSTWQQLPGVALHNSVQPTAVIPETIGSNQQLADWRNAHSHGNQYSTIMQQPSLLTNHVTLATAQPLNVGVAHVVRQQQSSGLAAKKNKQPAQSTAKPTTALEAVPSQVYSLIGSSPLRAASSSNALIPVQEQHQPIVIPDTPSPPVSVITIRSDTDEEEDSKYKPASLSMKQRSNVISYVTVNDSPDSDSSLNSPYSSDPLSAVRSAGGALELPAKGAANSSSSRTIIVPPLKTQLADCIVATQASGILSSVSKTKPVASVTGQSSGCCITPTGYRPPRMVTGGVQPLNLSQNQPTPVLASQERSGNPAPRRQQAYVAPLPSAISQAPYTFQHGSPVHPHLAAATASTHLPSQPHMYTYAPSTATTLGSTNSLAHLFSPQGSSRHTTYAAHPSTLVHQVPVSVGPSLLTSANVPPAQYQHQFATQSYIGASRGSAIYAGYPLSPTKINQYSYL
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1183932..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187926,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213131))
location: region:1183932-1213131:-1
so has part: feature:1212056-1213131:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187926:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1183932-1184417:-1:exon

XP_038235989.1
type: Protein
SIO_000068: ncbiprotein

position:1183932:-1
position: 1183932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1213131:-1
position: 1213131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212056-1213131:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1203445-1203568:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1198973-1199092:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1197821-1197907:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1196773-1196957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1196151-1196313:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1195193-1195415:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1192766-1192887:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1190829-1190963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1187787-1187926:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1187253-1187435:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1186484-1186696:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1185894-1186132:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1185349-1185485:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1183932-1184417:-1:exon

HIPK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: HIPK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeodomain-interacting protein kinase 1 isoform X1
translation: MASQLQVFSPPSVSSSAFCSAKKLKVEPSGWDVSGQGSSDKYYTRSKTLPAAQGQASSSRQVANFSIPAYDQNLLLPAPSVEHIVVTAADSTGSGATTSFQNSQTFTHRSNVSLLEPYQKCGLKRKSEEVDSNGSVQIIDEHPPLMLQNRPAVGAAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKYIRPILQQVATALMKLKSLGLIHADLKPENIMLVDPIRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLLSAGTKTSRFFNRDPNLGYPLWRLKTPEEHELETGIKSKEARKYIFNCLDDMAQVNMSTDLEGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHSFVTMTHLLDFPHSNHVKSCFQNMEICKRRVNMYDTINQIKSPFTTHVAPNTSTNLTMSFSNQLNTVHNQASVLASNSTAAATLSLANSDVSLLNYQSALYPSSAAPVAGVAQQSVSLQPGTTQICTQTDPFQQTFIVCPPAFQTGLQATAKHSGFPVRMENAVPIVPQAPTAQPLQIQSGVLTQGSCTPLMVATLHPQVATITPQYAVPFTLNCAAGRPALVEQTAAVLQAWPGGTQQILLPSTWQQLPGVALHNSVQPTAVIPETIGSNQQLADWRNAHSHGNQYSTIMQQPSLLTNHVTLATAQPLNVGVAHVVRQQQSSGLAAKKNKQPAQSTAKPTTALEAVPSQVYSLIGSSPLRAASSSNALIPVQEQHQPIVIPDTPSPPVSVITIRSDTDEEEDSKYKPASLSMKQRSNVISYVTVNDSPDSDSSLNSPYSSDPLSAVRSAGGALELPAKGAANSSSSRTIIVPPLKTQLADCIVATQASGILSSVSKTKPVASVTGQSSGCCITPTGYRPPRMVTGGVQPLNLSQNQPTPVLASQERSGNPAPRRQQAYVAPLPSAISQAPYTFQHGSPVHPHLAAATASTHLPSQPHMYTYAPSTATTLGSTNSLAHLFSPQGSSRHTTYAAHPSTLVHQVPVSVGPSLLTSANVPPAQYQHQFATQSYIGASRGSAIYAGYPLSPTKINQYSYL
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1183932..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187929,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213131))
location: region:1183932-1213131:-1
so has part: feature:1212056-1213131:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187929:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1183932-1184417:-1:exon

XP_043356251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1212056-1213131:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1203445-1203568:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1198973-1199092:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1197821-1197907:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1196773-1196957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1196151-1196313:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1195193-1195415:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1192766-1192887:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1190829-1190963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1187787-1187929:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1187253-1187435:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1186484-1186696:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1185894-1186132:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1185349-1185485:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1183932-1184417:-1:exon

HIPK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: HIPK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeodomain-interacting protein kinase 1 isoform X1
translation: MASQLQVFSPPSVSSSAFCSAKKLKVEPSGWDVSGQGSSDKYYTRSKTLPAAQGQASSSRQVANFSIPAYDQNLLLPAPSVEHIVVTAADSTGSGATTSFQNSQTFTHRSNVSLLEPYQKCGLKRKSEEVDSNGSVQIIDEHPPLMLQNRPAVGAAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKYIRPILQQVATALMKLKSLGLIHADLKPENIMLVDPIRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLLSAGTKTSRFFNRDPNLGYPLWRLKTPEEHELETGIKSKEARKYIFNCLDDMAQVNMSTDLEGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHSFVTMTHLLDFPHSNHVKSCFQNMEICKRRVNMYDTINQIKSPFTTHVAPNTSTNLTMSFSNQLNTVHNQASVLASNSTAAATLSLANSDVSLLNYQSALYPSSAAPVAGVAQQSVSLQPGTTQICTQTDPFQQTFIVCPPAFQTGLQATAKHSGFPVRMENAVPIVPQAPTAQPLQIQSGVLTQGSCTPLMVATLHPQVATITPQYAVPFTLNCAAGRPALVEQTAAVLQAWPGGTQQILLPSTWQQLPGVALHNSVQPTAVIPETIGSNQQLADWRNAHSHGNQYSTIMQQPSLLTNHVTLATAQPLNVGVAHVVRQQQSSGLAAKKNKQPAQSTAKPTTALEAVPSQVYSLIGSSPLRAASSSNALIPVQEQHQPIVIPDTPSPPVSVITIRSDTDEEEDSKYKPASLSMKQRSNVISYVTVNDSPDSDSSLNSPYSSDPLSAVRSAGGALELPAKGAANSSSSRTIIVPPLKTQLADCIVATQASGILSSVSKTKPVASVTGQSSGCCITPTGYRPPRMVTGGVQPLNLSQNQPTPVLASQERSGNPAPRRQQAYVAPLPSAISQAPYTFQHGSPVHPHLAAATASTHLPSQPHMYTYAPSTATTLGSTNSLAHLFSPQGSSRHTTYAAHPSTLVHQVPVSVGPSLLTSANVPPAQYQHQFATQSYIGASRGSAIYAGYPLSPTKINQYSYL
SIO_010081: HIPK1
subclass of: SO_0000673
so part of: HIPK1
location: complement(join(1183932..1184417,1185349..1185485,1185894..1186132,1186484..1186696,1187253..1187435,1187787..1187929,1190829..1190963,1192766..1192887,1195193..1195415,1196151..1196313,1196773..1196957,1197821..1197907,1198973..1199092,1203445..1203568,1212056..1213131))
location: region:1183932-1213131:-1
so has part: feature:1212056-1213131:-1:exon
so has part: feature:1203445-1203568:-1:exon
so has part: feature:1198973-1199092:-1:exon
so has part: feature:1197821-1197907:-1:exon
so has part: feature:1196773-1196957:-1:exon
so has part: feature:1196151-1196313:-1:exon
so has part: feature:1195193-1195415:-1:exon
so has part: feature:1192766-1192887:-1:exon
so has part: feature:1190829-1190963:-1:exon
so has part: feature:1187787-1187929:-1:exon
so has part: feature:1187253-1187435:-1:exon
so has part: feature:1186484-1186696:-1:exon
so has part: feature:1185894-1186132:-1:exon
so has part: feature:1185349-1185485:-1:exon
so has part: feature:1183932-1184417:-1:exon

XP_043356252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1212056-1213131:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1203445-1203568:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1198973-1199092:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1197821-1197907:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1196773-1196957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1196151-1196313:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1195193-1195415:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1192766-1192887:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1190829-1190963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1187787-1187929:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1187253-1187435:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1186484-1186696:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1185894-1186132:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1185349-1185485:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1183932-1184417:-1:exon

LOC122457175
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457175
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1213410..1223376
location: region:1213410-1223376:1
so has part: feature:1213410-1223376:1:exon
subclass of: SO_0000010

122457175
type: Gene
SIO_000068: ncbigene

position:1213410:1
position: 1213410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1223376:1
position: 1223376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1213410-1223376:1:exon

LOC122457175
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC122457175
product: transcription initiation factor TFIID subunit 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_043500719.1
SIO_010081: LOC122457175
subclass of: SO_0000673
so part of: LOC122457175
location: join(1213410..1213448,1216767..1217633,1218278..1220901,1221053..1223376)
location: region:1213410-1223376:1
so has part: feature:1213410-1213448:1:exon
so has part: feature:1216767-1217633:1:exon
so has part: feature:1218278-1220901:1:exon
so has part: feature:1221053-1223376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1213410-1213448:1:exon

position:1213448:1
position: 1213448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1216767-1217633:1:exon

position:1216767:1
position: 1216767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1217633:1
position: 1217633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1218278-1220901:1:exon

position:1218278:1
position: 1218278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1220901:1
position: 1220901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1221053-1223376:1:exon

position:1221053:1
position: 1221053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122457175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC122457175
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 4-like
translation: MQKSTSFSLALPKGGYTTGPPAPTRAGRGGLPSRPAALTAGGRSQPRAAAAGATRGDAGPRSGRIIAPERPPVQARPVRGEPPGRSAAARPRPAPRPGLARLPPLRAPAARWTPVPVGPLRLPRRSGPSAAYARLSQPSPELGPAPEQPSAEALNQGHVTARPSAITVTEAEARRRRGPIGYWEMGGRKPPRSETQAALGEGAGADPCGLPSLPAAALGLTARRGAQSPAPQPGRVAMGTWPLRGPPAPAGPGAKPGNRGRSPALGCAAPSAQRAAVAWGGARVPGVSSPPIAPGPREAPPRNTMKGERKGS
SIO_010081: LOC122457175
subclass of: SO_0000673
so part of: LOC122457175
location: join(1213410..1213448,1216767..1217633,1218278..1218310)
location: region:1213410-1218310:1
so has part: feature:1213410-1213448:1:exon
so has part: feature:1216767-1217633:1:exon
so has part: feature:1218278-1218310:1:exon

XP_043356654.1
type: Protein
SIO_000068: ncbiprotein

position:1218310:1
position: 1218310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1213410-1213448:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1216767-1217633:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1218278-1218310:1:exon

DCLRE1B
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: DCLRE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1226215..1236781)
location: region:1226215-1236781:-1
so has part: feature:1226215-1236781:-1:exon
subclass of: SO_0000010

119846417
type: Gene
SIO_000068: ncbigene

position:1226215:-1
position: 1226215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1236781:-1
position: 1236781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1226215-1236781:-1:exon

DCLRE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380078.2
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1226215..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236611..1236781))
location: region:1226215-1236781:-1
so has part: feature:1236611-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1226215-1234128:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1236611-1236781:-1:exon

position:1236611:-1
position: 1236611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

position:1235810:-1
position: 1235810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1236031:-1
position: 1236031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

position:1235084:-1
position: 1235084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1235249:-1
position: 1235249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

position:1234508:-1
position: 1234508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1234690:-1
position: 1234690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1226215-1234128:-1:exon

position:1234128:-1
position: 1234128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DCLRE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X7
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500325.1
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1226215..1229930,1233586..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1226215-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1233586-1234128:-1:exon
so has part: feature:1226215-1229930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

position:1236602:-1
position: 1236602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1233586-1234128:-1:exon

position:1233586:-1
position: 1233586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1226215-1229930:-1:exon

position:1229930:-1
position: 1229930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276447.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1226215..1229069,1231280..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1226215-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1231280-1234128:-1:exon
so has part: feature:1226215-1229069:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231280-1234128:-1:exon

position:1231280:-1
position: 1231280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1226215-1229069:-1:exon

position:1229069:-1
position: 1229069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DCLRE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500324.1
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1226215..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1226215-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1226215-1234128:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1226215-1234128:-1:exon

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_006276445.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1228935..1229042,1229807..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1228935-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1229807-1234128:-1:exon
so has part: feature:1228935-1229042:-1:exon

position:1228935:-1
position: 1228935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229807-1234128:-1:exon

position:1229807:-1
position: 1229807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1228935-1229042:-1:exon

position:1229042:-1
position: 1229042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_006276449.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1228938..1229042,1229819..1229930,1233586..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1228938-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1233586-1234128:-1:exon
so has part: feature:1229819-1229930:-1:exon
so has part: feature:1228938-1229042:-1:exon

position:1228938:-1
position: 1228938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1233586-1234128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1229819-1229930:-1:exon

position:1229819:-1
position: 1229819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1228938-1229042:-1:exon

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_006276450.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1228939..1229042,1229807..1229930,1233586..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1228939-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1233586-1234128:-1:exon
so has part: feature:1229807-1229930:-1:exon
so has part: feature:1228939-1229042:-1:exon

position:1228939:-1
position: 1228939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1233586-1234128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1229807-1229930:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1228939-1229042:-1:exon

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_006276446.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1228944..1229042,1229819..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1228944-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1229819-1234128:-1:exon
so has part: feature:1228944-1229042:-1:exon

position:1228944:-1
position: 1228944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229819-1234128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1228944-1229042:-1:exon

DCLRE1B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 27794
gene: DCLRE1B
product: DNA cross-link repair 1B, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_006276448.1
SIO_010081: DCLRE1B
so part of: DCLRE1B
location: complement(join(1228947..1229042,1229819..1229930,1231280..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1228947-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1231280-1234128:-1:exon
so has part: feature:1229819-1229930:-1:exon
so has part: feature:1228947-1229042:-1:exon

position:1228947:-1
position: 1228947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231280-1234128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1229819-1229930:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1228947-1229042:-1:exon

DCLRE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: DCLRE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5' exonuclease Apollo isoform X3
translation: MRSTSNDLGDRGPAHRPKRTHAPHRPYSRDALCACAVPLAGPVTQVTGGNGTFGSNQVNRCSVLCQPGAWAMNGAVIPGTPIAVDFWSIRKASHARLFFLSHMHSDHTVGLSSTWHRPVYCSPITGRILHHRLKVAERWIWPLEVGQSHLVALDAVGKRTMTVTLIDANHCPGSVMFLFEGPFGVILYTGDFRYTPTMLQEPVLRNQKRIDVLYLDNTNCDPLGDLPSRQQATQQIKELIRAHPNHQVKIGVYSLGKESLLADLALEFHTWIVVSPKRLEQMKVLGLVDVFTAEEGAGWIHGVDISEICWEAMISWNQQCPTIAILPTSRPVKVPHPSVHLVPYSDHSSFPELLEFVQWLKPCSIVPIVKRNMCLPYLEKYLSSVHKASPDPGIPESGQKFMQLRESREQQRAMEPQQAVPRKDSFASPEKGSCVHPAP
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1229905..1229930,1233586..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1229905-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1233586-1234128:-1:exon
so has part: feature:1229905-1229930:-1:exon

XP_043356260.1
type: Protein
SIO_000068: ncbiprotein

position:1229905:-1
position: 1229905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1233586-1234128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1229905-1229930:-1:exon

DCLRE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: DCLRE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5' exonuclease Apollo isoform X2
translation: MRSTSNDLGDRGPAHRPKRTHAPHRPYSRDALCACAVPLAGPVTQVTGGNGTFGSNQCSVLCQPGAWAMNGAVIPGTPIAVDFWSIRKASHARLFFLSHMHSDHTVGLSSTWHRPVYCSPITGRILHHRLKVAERWIWPLEVGQSHLVALDAVGKRTMTVTLIDANHCPGSVMFLFEGPFGVILYTGDFRYTPTMLQEPVLRNQKRIDVLYLDNTNCDPLGDLPSRQQATQQIKELIRAHPNHQVKIGVYSLGKESLLADLALEFHTWIVVSPKRLEQMKVLGLVDVFTAEEGAGWIHGVDISEICWEAMISWNQQCPTIAILPTSRPVKVPHPSVHLVPYSDHSSFPELLEFVQWLKPCSIVPIVKRNMCLPYLEKYLSSVHKASPDPGIPESGQKFMQLRESREQQRAMEPQQAVPRKDSFASPEKGTKWLEHFGDVTIGKQSSSEQPRNPDTCLQGGSGCCSGEREGIQVELCQLHGAQRLHFSAQPNTQTRATTQPQLPKDTSAWRSQRSTEVTAWPHTSSLSWQTGKKHTSHASPCQPPLGDWAPLTLASVQKKAALPSYKQSLTCLQTEEFLPPGAAGDSGSLTSWPPLASSHVARGLAEEYLLAPLNTLKQYSAESFDQQIENYFRRGEGP
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1232954..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236611..1236781))
location: region:1232954-1236781:-1
so has part: feature:1236611-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1232954-1234128:-1:exon

XP_038236006.1
type: Protein
SIO_000068: ncbiprotein

position:1232954:-1
position: 1232954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236611-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1232954-1234128:-1:exon

DCLRE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: DCLRE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5' exonuclease Apollo isoform X1
translation: MRSTSNDLGDRGPAHRPKRTHAPHRPYSRDALCACAVPLAGPVTQVTGGNGTFGSNQVNRCSVLCQPGAWAMNGAVIPGTPIAVDFWSIRKASHARLFFLSHMHSDHTVGLSSTWHRPVYCSPITGRILHHRLKVAERWIWPLEVGQSHLVALDAVGKRTMTVTLIDANHCPGSVMFLFEGPFGVILYTGDFRYTPTMLQEPVLRNQKRIDVLYLDNTNCDPLGDLPSRQQATQQIKELIRAHPNHQVKIGVYSLGKESLLADLALEFHTWIVVSPKRLEQMKVLGLVDVFTAEEGAGWIHGVDISEICWEAMISWNQQCPTIAILPTSRPVKVPHPSVHLVPYSDHSSFPELLEFVQWLKPCSIVPIVKRNMCLPYLEKYLSSVHKASPDPGIPESGQKFMQLRESREQQRAMEPQQAVPRKDSFASPEKGTKWLEHFGDVTIGKQSSSEQPRNPDTCLQGGSGCCSGEREGIQVELCQLHGAQRLHFSAQPNTQTRATTQPQLPKDTSAWRSQRSTEVTAWPHTSSLSWQTGKKHTSHASPCQPPLGDWAPLTLASVQKKAALPSYKQSLTCLQTEEFLPPGAAGDSGSLTSWPPLASSHVARGLAEEYLLAPLNTLKQYSAESFDQQIENYFRRGEGP
SIO_010081: DCLRE1B
subclass of: SO_0000673
so part of: DCLRE1B
location: complement(join(1232954..1234128,1234508..1234690,1235084..1235249,1235810..1236031,1236602..1236781))
location: region:1232954-1236781:-1
so has part: feature:1236602-1236781:-1:exon
so has part: feature:1235810-1236031:-1:exon
so has part: feature:1235084-1235249:-1:exon
so has part: feature:1234508-1234690:-1:exon
so has part: feature:1232954-1234128:-1:exon

XP_043356259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1236602-1236781:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1235810-1236031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1235084-1235249:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1234508-1234690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1232954-1234128:-1:exon

AP4B1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: AP4B1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1236918..1248440
location: region:1236918-1248440:1
so has part: feature:1236918-1248440:1:exon
subclass of: SO_0000010

119846416
type: Gene
SIO_000068: ncbigene

position:1236918:1
position: 1236918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1248440:1
position: 1248440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236918-1248440:1:exon

AP4B1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: AP4B1
product: adaptor related protein complex 4 subunit beta 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380076.2
SIO_010081: AP4B1
subclass of: SO_0000673
so part of: AP4B1
location: join(1236918..1237066,1237351..1237575,1239248..1239378,1239987..1240134,1240893..1241389,1242170..1242253,1243213..1243316,1245245..1245452,1245906..1246190,1246473..1248440)
location: region:1236918-1248440:1
so has part: feature:1236918-1237066:1:exon
so has part: feature:1237351-1237575:1:exon
so has part: feature:1239248-1239378:1:exon
so has part: feature:1239987-1240134:1:exon
so has part: feature:1240893-1241389:1:exon
so has part: feature:1242170-1242253:1:exon
so has part: feature:1243213-1243316:1:exon
so has part: feature:1245245-1245452:1:exon
so has part: feature:1245906-1246190:1:exon
so has part: feature:1246473-1248440:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1236918-1237066:1:exon

position:1237066:1
position: 1237066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1237351-1237575:1:exon

position:1237351:1
position: 1237351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1237575:1
position: 1237575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1239248-1239378:1:exon

position:1239248:1
position: 1239248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1239378:1
position: 1239378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1239987-1240134:1:exon

position:1239987:1
position: 1239987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1240134:1
position: 1240134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1240893-1241389:1:exon

position:1240893:1
position: 1240893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1241389:1
position: 1241389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1242170-1242253:1:exon

position:1242170:1
position: 1242170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1242253:1
position: 1242253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1243213-1243316:1:exon

position:1243213:1
position: 1243213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1243316:1
position: 1243316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1245245-1245452:1:exon

position:1245245:1
position: 1245245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1245452:1
position: 1245452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1245906-1246190:1:exon

position:1245906:1
position: 1245906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1246190:1
position: 1246190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1246473-1248440:1:exon

position:1246473:1
position: 1246473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AP4B1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: AP4B1
product: adaptor related protein complex 4 subunit beta 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380077.2
SIO_010081: AP4B1
subclass of: SO_0000673
so part of: AP4B1
location: join(1236937..1237066,1239248..1239378,1239987..1240134,1240893..1241389,1242170..1242253,1243213..1243316,1245245..1245452,1245906..1246190,1246473..1248440)
location: region:1236937-1248440:1
so has part: feature:1236937-1237066:1:exon
so has part: feature:1239248-1239378:1:exon
so has part: feature:1239987-1240134:1:exon
so has part: feature:1240893-1241389:1:exon
so has part: feature:1242170-1242253:1:exon
so has part: feature:1243213-1243316:1:exon
so has part: feature:1245245-1245452:1:exon
so has part: feature:1245906-1246190:1:exon
so has part: feature:1246473-1248440:1:exon

position:1236937:1
position: 1236937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236937-1237066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1239248-1239378:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1239987-1240134:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1240893-1241389:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1242170-1242253:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1243213-1243316:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1245245-1245452:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1245906-1246190:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1246473-1248440:1:exon

AP4B1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: AP4B1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-4 complex subunit beta-1 isoform X1
translation: MPHWDAEDAVAELRRALSNRHAQADRLRFRNVLLRVIRRMTQGVDVSGVFVEMVKAAAAGDIVQKKLVYWYLGAFASLQPAPALLAINTLRNDCSDPSPMVRGLALRSMCSLRMPGIQEYIQQPILNGLRDKASYVRRVAVLGCAKMQKLQGDTEVDGVLVNELYSLLRDQDPIVVVNCLRALEEILRREGGVVINKPIAHHLLKRMSDLDQWGQSEVLAFLLRYKPRSEEELFDILSLLDGSLKSNSPSVVMAATKLFLVLAKDFPLVQTDVLVRVKGPLLAACNSESRELCFAALCHVRQILGSLPGHFSSHYKKFFCSYSEPHYIKSQKMEVLCELVNDENVQQVLEELKSYCTDVSAELAQGAIFAIGSIARTYTEQCVGILTELLGLKQEHITSAVVQAFRDLVWLCPQCTEAVCQALPSCEEAVQDSEGKQALIWLLGVHGERVPNAPYVLEDFVENVRSETFPAVKMELLTALVRLFLFRPAECQDILGRLLYYCIEEETDMVIRDRGLFYYRLLQAGMEEAKRVLCSPKSDPSLGLLEDQAERPVNKWASEFNTLVPVYGKACWAVVTANWAMEPHSGGFPCAAPMTAGTESLVSEGNKEVLQVHSDSAGLTLIPKAHLTAEQFEKTWLSLDVNCQQALPWCGAAHPDTIQTALQVVHIQTIAMSKAGAQPWKAYLSAQDESGCLFLTELVLETENSEMQVSVKQSEERTEALQHFISVLRTVMGTVLGLKS
SIO_010081: AP4B1
subclass of: SO_0000673
so part of: AP4B1
location: join(1236954..1237066,1237351..1237575,1239248..1239378,1239987..1240134,1240893..1241389,1242170..1242253,1243213..1243316,1245245..1245452,1245906..1246190,1246473..1246900)
location: region:1236954-1246900:1
so has part: feature:1236954-1237066:1:exon
so has part: feature:1237351-1237575:1:exon
so has part: feature:1239248-1239378:1:exon
so has part: feature:1239987-1240134:1:exon
so has part: feature:1240893-1241389:1:exon
so has part: feature:1242170-1242253:1:exon
so has part: feature:1243213-1243316:1:exon
so has part: feature:1245245-1245452:1:exon
so has part: feature:1245906-1246190:1:exon
so has part: feature:1246473-1246900:1:exon

XP_038236004.1
type: Protein
SIO_000068: ncbiprotein

position:1236954:1
position: 1236954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1246900:1
position: 1246900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236954-1237066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1237351-1237575:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1239248-1239378:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1239987-1240134:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1240893-1241389:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1242170-1242253:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1243213-1243316:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1245245-1245452:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1245906-1246190:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1246473-1246900:1:exon

AP4B1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: AP4B1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-4 complex subunit beta-1 isoform X2
translation: MPHWDAEDAVAELRRALSNRHAQADRLRFRNVLLRVIRMPGIQEYIQQPILNGLRDKASYVRRVAVLGCAKMQKLQGDTEVDGVLVNELYSLLRDQDPIVVVNCLRALEEILRREGGVVINKPIAHHLLKRMSDLDQWGQSEVLAFLLRYKPRSEEELFDILSLLDGSLKSNSPSVVMAATKLFLVLAKDFPLVQTDVLVRVKGPLLAACNSESRELCFAALCHVRQILGSLPGHFSSHYKKFFCSYSEPHYIKSQKMEVLCELVNDENVQQVLEELKSYCTDVSAELAQGAIFAIGSIARTYTEQCVGILTELLGLKQEHITSAVVQAFRDLVWLCPQCTEAVCQALPSCEEAVQDSEGKQALIWLLGVHGERVPNAPYVLEDFVENVRSETFPAVKMELLTALVRLFLFRPAECQDILGRLLYYCIEEETDMVIRDRGLFYYRLLQAGMEEAKRVLCSPKSDPSLGLLEDQAERPVNKWASEFNTLVPVYGKACWAVVTANWAMEPHSGGFPCAAPMTAGTESLVSEGNKEVLQVHSDSAGLTLIPKAHLTAEQFEKTWLSLDVNCQQALPWCGAAHPDTIQTALQVVHIQTIAMSKAGAQPWKAYLSAQDESGCLFLTELVLETENSEMQVSVKQSEERTEALQHFISVLRTVMGTVLGLKS
SIO_010081: AP4B1
subclass of: SO_0000673
so part of: AP4B1
location: join(1236954..1237066,1239248..1239378,1239987..1240134,1240893..1241389,1242170..1242253,1243213..1243316,1245245..1245452,1245906..1246190,1246473..1246900)
location: region:1236954-1246900:1
so has part: feature:1236954-1237066:1:exon
so has part: feature:1239248-1239378:1:exon
so has part: feature:1239987-1240134:1:exon
so has part: feature:1240893-1241389:1:exon
so has part: feature:1242170-1242253:1:exon
so has part: feature:1243213-1243316:1:exon
so has part: feature:1245245-1245452:1:exon
so has part: feature:1245906-1246190:1:exon
so has part: feature:1246473-1246900:1:exon

XP_038236005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1236954-1237066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1239248-1239378:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1239987-1240134:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1240893-1241389:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1242170-1242253:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1243213-1243316:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1245245-1245452:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1245906-1246190:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1246473-1246900:1:exon

BCL2L15
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: BCL2L15
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1248770..1254848
location: region:1248770-1254848:1
so has part: feature:1248770-1254848:1:exon
subclass of: SO_0000010

119846420
type: Gene
SIO_000068: ncbigene

position:1248770:1
position: 1248770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1254848:1
position: 1254848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1248770-1254848:1:exon

BCL2L15
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: BCL2L15
product: BCL2 like 15
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
transcript id: XM_043500329.1
SIO_010081: BCL2L15
subclass of: SO_0000673
so part of: BCL2L15
location: join(1248770..1250816,1253135..1253312,1253859..1254074,1254747..1254848)
location: region:1248770-1254848:1
so has part: feature:1248770-1250816:1:exon
so has part: feature:1253135-1253312:1:exon
so has part: feature:1253859-1254074:1:exon
so has part: feature:1254747-1254848:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1248770-1250816:1:exon

position:1250816:1
position: 1250816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1253135-1253312:1:exon

position:1253135:1
position: 1253135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1253312:1
position: 1253312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1253859-1254074:1:exon

position:1253859:1
position: 1253859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1254074:1
position: 1254074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1254747-1254848:1:exon

position:1254747:1
position: 1254747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BCL2L15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: BCL2L15
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: bcl-2-like protein 15
translation: MKSPRTFEEQTECIVEALLSDLLGEDEGTAFHSLETDSFSESGAGYTAFPCSLSAVLELQLSAGAEASSTFDSVIIASHLRRLGDEYNEDLERPAQRIVVEGKVEEFGVMVDSLSKSWSSLNPELGYERAFLAVSVKLLVYLSQKVPAMARQIQLVELINGNREVRAYIETRGGWENFGN
SIO_010081: BCL2L15
subclass of: SO_0000673
so part of: BCL2L15
location: join(1250684..1250816,1253135..1253312,1253859..1254074,1254747..1254764)
location: region:1250684-1254764:1
so has part: feature:1250684-1250816:1:exon
so has part: feature:1253135-1253312:1:exon
so has part: feature:1253859-1254074:1:exon
so has part: feature:1254747-1254764:1:exon

XP_043356264.1
type: Protein
SIO_000068: ncbiprotein

position:1250684:1
position: 1250684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1254764:1
position: 1254764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1250684-1250816:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1253135-1253312:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1253859-1254074:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1254747-1254764:1:exon

LOC119846418
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1255727..1301285)
location: region:1255727-1301285:-1
so has part: feature:1255727-1301285:-1:exon
subclass of: SO_0000010

119846418
type: Gene
SIO_000068: ncbigene

position:1255727:-1
position: 1255727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1301285:-1
position: 1301285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1255727-1301285:-1:exon

LOC119846418
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846418
product: uncharacterized LOC119846418, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500326.1
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1255727..1256613,1257867..1257967,1258748..1258868,1259361..1259672,1261194..1261526,1293351..1293457,1301141..1301285))
location: region:1255727-1301285:-1
so has part: feature:1301141-1301285:-1:exon
so has part: feature:1293351-1293457:-1:exon
so has part: feature:1261194-1261526:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257867-1257967:-1:exon
so has part: feature:1255727-1256613:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1301141-1301285:-1:exon

position:1301141:-1
position: 1301141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1293351-1293457:-1:exon

position:1293351:-1
position: 1293351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1293457:-1
position: 1293457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1261194-1261526:-1:exon

position:1261194:-1
position: 1261194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1261526:-1
position: 1261526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1259361-1259672:-1:exon

position:1259361:-1
position: 1259361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1259672:-1
position: 1259672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1258748-1258868:-1:exon

position:1258748:-1
position: 1258748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1258868:-1
position: 1258868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1257867-1257967:-1:exon

position:1257867:-1
position: 1257867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1257967:-1
position: 1257967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1255727-1256613:-1:exon

position:1256613:-1
position: 1256613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846418
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846418
product: uncharacterized LOC119846418, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500327.1
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1255727..1256613,1257867..1257967,1258748..1258868,1259361..1259672,1261194..1261526,1293351..1293457,1300910..1301249))
location: region:1255727-1301249:-1
so has part: feature:1300910-1301249:-1:exon
so has part: feature:1293351-1293457:-1:exon
so has part: feature:1261194-1261526:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257867-1257967:-1:exon
so has part: feature:1255727-1256613:-1:exon

position:1301249:-1
position: 1301249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1300910-1301249:-1:exon

position:1300910:-1
position: 1300910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1293351-1293457:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1261194-1261526:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1259361-1259672:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1258748-1258868:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1257867-1257967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1255727-1256613:-1:exon

LOC119846418
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846418
product: uncharacterized LOC119846418, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380080.2
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1255727..1256613,1257867..1257967,1258748..1258868,1259361..1259672,1261194..1261526,1271820..1274605))
location: region:1255727-1274605:-1
so has part: feature:1271820-1274605:-1:exon
so has part: feature:1261194-1261526:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257867-1257967:-1:exon
so has part: feature:1255727-1256613:-1:exon

position:1274605:-1
position: 1274605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1271820-1274605:-1:exon

position:1271820:-1
position: 1271820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1261194-1261526:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1259361-1259672:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1258748-1258868:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1257867-1257967:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1255727-1256613:-1:exon

LOC119846418
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119846418 isoform X1
translation: MSWCGGDWFQGPHYRLVMVLFPFGLLFWTPWVWCTPSLSSDGEKAAMEGMSTTITCSYDRGRYMFNRKYWCHGGSRSSCDILSDTENFVKSEYKGRLLLLDNKRGDFLVMMHQLVEDSGMYWGGIQRPYTDIMTAVKLTVTEEPLSTPLITLTSHPSESCLGRSMTVRCHSATGSNVYYTWYRKSFPTNIITVHSSDLVLRCGDLLESQSYYCQAATRRTNKSTQVLRVEVLTPAKENCTYQLQLTDGESYNCIRTTPVFTAEMPSTPFTGYTAPCSNSSSHSGIEDSWIPVPWAILHWLFLVILVVSLIIIQSNRT
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1257874..1257967,1258748..1258868,1259361..1259672,1261194..1261526,1271820..1271913))
location: region:1257874-1271913:-1
so has part: feature:1271820-1271913:-1:exon
so has part: feature:1261194-1261526:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257874-1257967:-1:exon

XP_038236008.1
type: Protein
SIO_000068: ncbiprotein

position:1257874:-1
position: 1257874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1271913:-1
position: 1271913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1271820-1271913:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1261194-1261526:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1259361-1259672:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1258748-1258868:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1257874-1257967:-1:exon

LOC119846418
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119846418 isoform X2
translation: MEGMSTTITCSYDRGRYMFNRKYWCHGGSRSSCDILSDTENFVKSEYKGRLLLLDNKRGDFLVMMHQLVEDSGMYWGGIQRPYTDIMTAVKLTVTEEPLSTPLITLTSHPSESCLGRSMTVRCHSATGSNVYYTWYRKSFPTNIITVHSSDLVLRCGDLLESQSYYCQAATRRTNKSTQVLRVEVLTPAKENCTYQLQLTDGESYNCIRTTPVFTAEMPSTPFTGYTAPCSNSSSHSGIEDSWIPVPWAILHWLFLVILVVSLIIIQSNRT
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1257874..1257967,1258748..1258868,1259361..1259672,1261194..1261482))
location: region:1257874-1261482:-1
so has part: feature:1261194-1261482:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257874-1257967:-1:exon

XP_043356261.1
type: Protein
SIO_000068: ncbiprotein

position:1261482:-1
position: 1261482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1261194-1261482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1259361-1259672:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1258748-1258868:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1257874-1257967:-1:exon

LOC119846418
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119846418 isoform X2
translation: MEGMSTTITCSYDRGRYMFNRKYWCHGGSRSSCDILSDTENFVKSEYKGRLLLLDNKRGDFLVMMHQLVEDSGMYWGGIQRPYTDIMTAVKLTVTEEPLSTPLITLTSHPSESCLGRSMTVRCHSATGSNVYYTWYRKSFPTNIITVHSSDLVLRCGDLLESQSYYCQAATRRTNKSTQVLRVEVLTPAKENCTYQLQLTDGESYNCIRTTPVFTAEMPSTPFTGYTAPCSNSSSHSGIEDSWIPVPWAILHWLFLVILVVSLIIIQSNRT
SIO_010081: LOC119846418
subclass of: SO_0000673
so part of: LOC119846418
location: complement(join(1257874..1257967,1258748..1258868,1259361..1259672,1261194..1261482))
location: region:1257874-1261482:-1
so has part: feature:1261194-1261482:-1:exon
so has part: feature:1259361-1259672:-1:exon
so has part: feature:1258748-1258868:-1:exon
so has part: feature:1257874-1257967:-1:exon

XP_043356262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1261194-1261482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1259361-1259672:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1258748-1258868:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1257874-1257967:-1:exon

PTPN22
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1266802..1297641
location: region:1266802-1297641:1
so has part: feature:1266802-1297641:1:exon
subclass of: SO_0000010

119846414
type: Gene
SIO_000068: ncbigene

position:1266802:1
position: 1266802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1297641:1
position: 1297641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1266802-1297641:1:exon

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_043500318.1
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1266802..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1266802-1297641:1
so has part: feature:1266802-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1266802-1267791:1:exon

position:1267791:1
position: 1267791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

position:1275139:1
position: 1275139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1275247:1
position: 1275247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

position:1276009:1
position: 1276009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1276085:1
position: 1276085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

position:1277191:1
position: 1277191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1277286:1
position: 1277286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

position:1277904:1
position: 1277904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1277942:1
position: 1277942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

position:1278411:1
position: 1278411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1278482:1
position: 1278482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

position:1278598:1
position: 1278598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1278657:1
position: 1278657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

position:1279816:1
position: 1279816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1279958:1
position: 1279958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

position:1280805:1
position: 1280805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1280871:1
position: 1280871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

position:1282231:1
position: 1282231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1282308:1
position: 1282308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

position:1282839:1
position: 1282839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1282931:1
position: 1282931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

position:1284868:1
position: 1284868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1284944:1
position: 1284944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

position:1285560:1
position: 1285560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1286353:1
position: 1286353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

position:1287986:1
position: 1287986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288069:1
position: 1288069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

position:1288205:1
position: 1288205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288335:1
position: 1288335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1288947-1288991:1:exon

position:1288947:1
position: 1288947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288991:1
position: 1288991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1290638-1290665:1:exon

position:1290638:1
position: 1290638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1290665:1
position: 1290665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1292581-1292661:1:exon

position:1292581:1
position: 1292581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1292661:1
position: 1292661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1293164-1293270:1:exon

position:1293164:1
position: 1293164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1293270:1
position: 1293270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1293963-1293993:1:exon

position:1293963:1
position: 1293963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1293993:1
position: 1293993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1295564-1295641:1:exon

position:1295564:1
position: 1295564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1295641:1
position: 1295641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1296965-1297641:1:exon

position:1296965:1
position: 1296965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_043500319.1
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1266803..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1290611..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1266803-1297641:1
so has part: feature:1266803-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1290611-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

position:1266803:1
position: 1266803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1266803-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1290611-1290665:1:exon

position:1290611:1
position: 1290611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1296965-1297641:1:exon

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_038380064.2
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1266805..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286332,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1266805-1297641:1
so has part: feature:1266805-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286332:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

position:1266805:1
position: 1266805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1266805-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286332:1:exon

position:1286332:1
position: 1286332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1296965-1297641:1:exon

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_043500320.1
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1266808..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1266808-1297641:1
so has part: feature:1266808-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

position:1266808:1
position: 1266808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1266808-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1296965-1297641:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X1
translation: MDQREILLQNLDRAQSRKLNREEFANEFLKLKRQSTKYRSDRIYLTAASEQPENIKKNRYKDILPFDHSRVELSLITSDKDSHYINANFIKGVYGPRAYIATQGPLSTTVLDFWRMIWEYEVLIVVMACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGRQASSQRASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKDPKALYKSASSLGKKSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1267705..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1267705-1297029:1
so has part: feature:1267705-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_043356253.1
type: Protein
SIO_000068: ncbiprotein

position:1267705:1
position: 1267705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1297029:1
position: 1297029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1267705-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1296965-1297029:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X2
translation: MDQREILLQNLDRAQSRKLNREEFANEFLKLKRQSTKYRSDRIYLTAASEQPENIKKNRYKDILPFDHSRVELSLITSDKDSHYINANFIKGVYGPRAYIATQGPLSTTVLDFWRMIWEYEVLIVVMACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGRQASSQRASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKVFSFFVCFQSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1267705..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1290611..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1267705-1297029:1
so has part: feature:1267705-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1290611-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_043356254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1267705-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1290611-1290665:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1296965-1297029:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X4
translation: MDQREILLQNLDRAQSRKLNREEFANEFLKLKRQSTKYRSDRIYLTAASEQPENIKKNRYKDILPFDHSRVELSLITSDKDSHYINANFIKGVYGPRAYIATQGPLSTTVLDFWRMIWEYEVLIVVMACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGRQASSQRASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1267705..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1267705-1297029:1
so has part: feature:1267705-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_043356255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1267705-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1296965-1297029:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X3
translation: MDQREILLQNLDRAQSRKLNREEFANEFLKLKRQSTKYRSDRIYLTAASEQPENIKKNRYKDILPFDHSRVELSLITSDKDSHYINANFIKGVYGPRAYIATQGPLSTTVLDFWRMIWEYEVLIVVMACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKDPKALYKSASSLGKKSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1267705..1267791,1275139..1275247,1276009..1276085,1277191..1277286,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286332,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1267705-1297029:1
so has part: feature:1267705-1267791:1:exon
so has part: feature:1275139-1275247:1:exon
so has part: feature:1276009-1276085:1:exon
so has part: feature:1277191-1277286:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286332:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_038235992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1267705-1267791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1275139-1275247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1276009-1276085:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1277191-1277286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1285560-1286332:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1296965-1297029:1:exon

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_043500321.1
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1277191..1277656,1277845..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1277191-1297641:1
so has part: feature:1277191-1277656:1:exon
so has part: feature:1277845-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1277191-1277656:1:exon

position:1277656:1
position: 1277656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1277845-1277942:1:exon

position:1277845:1
position: 1277845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1296965-1297641:1:exon

PTPN22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PTPN22
product: protein tyrosine phosphatase non-receptor type 22, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_043500322.1
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1277191..1277291,1277904..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297641)
location: region:1277191-1297641:1
so has part: feature:1277191-1277291:1:exon
so has part: feature:1277904-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297641:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1277191-1277291:1:exon

position:1277291:1
position: 1277291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1277904-1277942:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1296965-1297641:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X5
translation: MACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGRQASSQRASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKDPKALYKSASSLGKKSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1277913..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1277913-1297029:1
so has part: feature:1277913-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_043356256.1
type: Protein
SIO_000068: ncbiprotein

position:1277913:1
position: 1277913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1277913-1277942:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1296965-1297029:1:exon

PTPN22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PTPN22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 22 isoform X5
translation: MACMEFEMGKKKCERYWVEVGNSPLQCGPFTITCELEEKKTEYVIRTLKVTLNKVIRTIYQFHHKNWPDHDVPSSINPILKLIWEMRCYQADDNIPICIHCSAGCGRTGVICAIDYTWKLLKDGIVPENFSIFSLVQEMRTQRPSIVQTKEQYELVYDAVIELFKRQIEMLSVQSDSAATEIQTNHLRLQPLLSPLEETYSLTLPSCSARGEQELHQRSDHMVQGEISLTDASSCRPSTVHDNSGHSVPPIRQALSSGALNFSSSKNAGAAVKWDTLLSGEPLQKHHSLDLSSIVSEALPLNLKSTAACRGNPCVKAPLIQTKSTPFELLQQRDTRELDGGDAVPSLDPWLPNSCSSVGFEVKRQTDFSSVELNHSSRLVDAAPRHMSSGPHPSSHCCSAEDPYFSSLSSDDPGSPMFIDYFSELYETVSLSFPAATSTIQALDSTNASPPVTTSLSQHVHPLDGRQASSQRASPDPDDDVPPPLPERTPESFIVANEIGQPPLAMSNHQPVPRNINIGTSSEWSGVSQPKIFDDSVRLRPSKDPKALYKSASSLGKKSVKLRSSSSEKQRDRSSSPPPLPERTPESFFLANEESLQPTVRTSTSNPGDAGNKASEESSKESVKCFKRSKSLKILRNMKKNICSPSSLAKPPESAQSNHSSSFLSFGFTSRFSKPKGPRNPPPSWNI
SIO_010081: PTPN22
subclass of: SO_0000673
so part of: PTPN22
location: join(1277913..1277942,1278411..1278482,1278598..1278657,1279816..1279958,1280805..1280871,1282231..1282308,1282839..1282931,1284868..1284944,1285560..1286353,1287986..1288069,1288205..1288335,1288947..1288991,1290638..1290665,1292581..1292661,1293164..1293270,1293963..1293993,1295564..1295641,1296965..1297029)
location: region:1277913-1297029:1
so has part: feature:1277913-1277942:1:exon
so has part: feature:1278411-1278482:1:exon
so has part: feature:1278598-1278657:1:exon
so has part: feature:1279816-1279958:1:exon
so has part: feature:1280805-1280871:1:exon
so has part: feature:1282231-1282308:1:exon
so has part: feature:1282839-1282931:1:exon
so has part: feature:1284868-1284944:1:exon
so has part: feature:1285560-1286353:1:exon
so has part: feature:1287986-1288069:1:exon
so has part: feature:1288205-1288335:1:exon
so has part: feature:1288947-1288991:1:exon
so has part: feature:1290638-1290665:1:exon
so has part: feature:1292581-1292661:1:exon
so has part: feature:1293164-1293270:1:exon
so has part: feature:1293963-1293993:1:exon
so has part: feature:1295564-1295641:1:exon
so has part: feature:1296965-1297029:1:exon

XP_043356257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1277913-1277942:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1278411-1278482:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1278598-1278657:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1279816-1279958:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1280805-1280871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1282231-1282308:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1282839-1282931:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1284868-1284944:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1285560-1286353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1287986-1288069:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1288205-1288335:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1288947-1288991:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1290638-1290665:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1292581-1292661:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1293164-1293270:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1293963-1293993:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1295564-1295641:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1296965-1297029:1:exon

RSBN1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: RSBN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1301268..1352708
location: region:1301268-1352708:1
so has part: feature:1301268-1352708:1:exon
subclass of: SO_0000010

119846338
type: Gene
SIO_000068: ncbigene

position:1301268:1
position: 1301268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1352708:1
position: 1352708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1301268-1352708:1:exon

RSBN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: RSBN1
product: round spermatid basic protein 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
transcript id: XM_038379875.2
SIO_010081: RSBN1
subclass of: SO_0000673
so part of: RSBN1
location: join(1301268..1301836,1311045..1311715,1342167..1342304,1342753..1342895,1345202..1345369,1346415..1346523,1347234..1352708)
location: region:1301268-1352708:1
so has part: feature:1301268-1301836:1:exon
so has part: feature:1311045-1311715:1:exon
so has part: feature:1342167-1342304:1:exon
so has part: feature:1342753-1342895:1:exon
so has part: feature:1345202-1345369:1:exon
so has part: feature:1346415-1346523:1:exon
so has part: feature:1347234-1352708:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1301268-1301836:1:exon

position:1301836:1
position: 1301836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1311045-1311715:1:exon

position:1311045:1
position: 1311045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1311715:1
position: 1311715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1342167-1342304:1:exon

position:1342167:1
position: 1342167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1342304:1
position: 1342304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1342753-1342895:1:exon

position:1342753:1
position: 1342753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1342895:1
position: 1342895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1345202-1345369:1:exon

position:1345202:1
position: 1345202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1345369:1
position: 1345369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1346415-1346523:1:exon

position:1346415:1
position: 1346415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1346523:1
position: 1346523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1347234-1352708:1:exon

position:1347234:1
position: 1347234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RSBN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: RSBN1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: lysine-specific demethylase 9
translation: MRLETRTSWPDVAGGTTVPMRRHAAPARWLLALGPFKCAXEGDCEMAAQVAAVRAVSRGPEESPPLPSGDRPGRPRGGGRRRRGPAGEAVGGKRARLSQPLLVGPSPAEPMPPAGLPAAAAAAAAGLFTFSPLSLPQGPPQQERHHHHRHRPAGDSEPGHPAGAKPHKGKRGSSGDGAAGRPSKRETPDENGKTQRADSLIMKKIKKKKKKKHREDMRGKRLKMYNKEVQTVCAGLTRINKEILTQGQSDNSEVNKESFRYLKDEQLCRLNLGMQEYRVPQGVQTPFMTHQEHSVRSSFLKTGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERFAEEFLALSFSENEKNAAYYALAIVHGAAAYLPDFLDYFAFNFPNTPVKMEILGKKDIETTTISNFHTQVNRTYCCGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEESPFLRMTLPWGTLSSLQLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIKNLQYLPRTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGEWSVQPRITKDVVCFHAEDFTDVVQRLQLDLHEPPVSQCVQWVDEAKLNQMRREGIRYARIQLCDNDIYFIPRNVIHQFKTVSAVCSLAWHIRLKQYHPVGKSSQNAESNSNMNSNIPEKTESEGEPQCVSVKTESEEPGVEMQLTTGEPSSSSISSILGLVLQPDQVAQPLPVFKLESDQQHNPQDHTDSSV
SIO_010081: RSBN1
subclass of: SO_0000673
so part of: RSBN1
location: join(1301283..1301836,1311045..1311715,1342167..1342304,1342753..1342895,1345202..1345369,1346415..1346523,1347234..1347701)
location: region:1301283-1347701:1
so has part: feature:1301283-1301836:1:exon
so has part: feature:1311045-1311715:1:exon
so has part: feature:1342167-1342304:1:exon
so has part: feature:1342753-1342895:1:exon
so has part: feature:1345202-1345369:1:exon
so has part: feature:1346415-1346523:1:exon
so has part: feature:1347234-1347701:1:exon

XP_038235803.2
type: Protein
SIO_000068: ncbiprotein

position:1301283:1
position: 1301283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1347701:1
position: 1347701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1301283-1301836:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1311045-1311715:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1342167-1342304:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1342753-1342895:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1345202-1345369:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1346415-1346523:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1347234-1347701:1:exon

PHTF1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1356785..1383062
location: region:1356785-1383062:1
so has part: feature:1356785-1383062:1:exon
subclass of: SO_0000010

119846193
type: Gene
SIO_000068: ncbigene

position:1356785:1
position: 1356785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1383062:1
position: 1383062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1356785-1383062:1:exon

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379480.2
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1356785..1357105,1357505..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1356785-1383062:1
so has part: feature:1356785-1357105:1:exon
so has part: feature:1357505-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1356785-1357105:1:exon

position:1357105:1
position: 1357105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1357505-1357580:1:exon

position:1357505:1
position: 1357505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1357580:1
position: 1357580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1359357-1359413:1:exon

position:1359357:1
position: 1359357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1359413:1
position: 1359413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1360754-1360823:1:exon

position:1360754:1
position: 1360754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1360823:1
position: 1360823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1361914-1362072:1:exon

position:1361914:1
position: 1361914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1362072:1
position: 1362072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1363934-1364099:1:exon

position:1363934:1
position: 1363934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1364099:1
position: 1364099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1366026-1366166:1:exon

position:1366026:1
position: 1366026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1366166:1
position: 1366166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1366995-1367154:1:exon

position:1366995:1
position: 1366995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1367154:1
position: 1367154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1368087-1368260:1:exon

position:1368087:1
position: 1368087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1368260:1
position: 1368260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1368344-1368421:1:exon

position:1368344:1
position: 1368344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1368421:1
position: 1368421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1369852-1370061:1:exon

position:1369852:1
position: 1369852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1370061:1
position: 1370061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1373986-1374114:1:exon

position:1373986:1
position: 1373986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1374114:1
position: 1374114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1375475-1375747:1:exon

position:1375475:1
position: 1375475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1375747:1
position: 1375747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1376510-1376641:1:exon

position:1376510:1
position: 1376510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376641:1
position: 1376641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1376869-1376955:1:exon

position:1376869:1
position: 1376869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376955:1
position: 1376955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1377545-1377700:1:exon

position:1377545:1
position: 1377545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1377700:1
position: 1377700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1379245-1379340:1:exon

position:1379245:1
position: 1379245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1379340:1
position: 1379340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1379979-1380104:1:exon

position:1379979:1
position: 1379979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1380104:1
position: 1380104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1380510-1383062:1:exon

position:1380510:1
position: 1380510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500627.1
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1356855..1356868,1357505..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1356855-1383062:1
so has part: feature:1356855-1356868:1:exon
so has part: feature:1357505-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

position:1356855:1
position: 1356855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1356855-1356868:1:exon

position:1356868:1
position: 1356868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1357505-1357580:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1361914-1362072:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1380510-1383062:1:exon

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500628.1
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1356884..1357105,1357505..1357580,1359357..1359413,1360754..1360823,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1356884-1383062:1
so has part: feature:1356884-1357105:1:exon
so has part: feature:1357505-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

position:1356884:1
position: 1356884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1356884-1357105:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1357505-1357580:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1380510-1383062:1:exon

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379482.2
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1356885..1357172,1357505..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1356885-1383062:1
so has part: feature:1356885-1357172:1:exon
so has part: feature:1357505-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

position:1356885:1
position: 1356885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1356885-1357172:1:exon

position:1357172:1
position: 1357172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1357505-1357580:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1361914-1362072:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1380510-1383062:1:exon

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500629.1
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357122..1357172,1357505..1357580,1359357..1359413,1360754..1360823,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1357122-1383062:1
so has part: feature:1357122-1357172:1:exon
so has part: feature:1357505-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

position:1357122:1
position: 1357122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1357122-1357172:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1357505-1357580:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1380510-1383062:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X1
translation: MAARGRDAIAWYQKKIGAYDQQIWEKSIEQTEMKGFKNKPQKKGHIQPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGIVRVVFFPLFSRWWIQVTSQRIFMWLLVLYLMQVIAVMLYFMIPVASASEIIGPMCLMLLMGTVHCQIVSTQINKPPGTNGGGSSRRRRKLRKPVGSDGSRDAGSWSSSDKTNKGDKQLEPTSIINSLFGMLFRRRLRRVKLVADKGTETESGVSSVYSGIKHRLSRSEYRLLHFKERERLSDGEKSHRDGCTRTGGISDELSSEEDAEAMAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357536..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1357536-1380530:1
so has part: feature:1357536-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_038235408.1
type: Protein
SIO_000068: ncbiprotein

position:1357536:1
position: 1357536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1380530:1
position: 1380530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1357536-1357580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1361914-1362072:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1380510-1380530:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X1
translation: MAARGRDAIAWYQKKIGAYDQQIWEKSIEQTEMKGFKNKPQKKGHIQPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGIVRVVFFPLFSRWWIQVTSQRIFMWLLVLYLMQVIAVMLYFMIPVASASEIIGPMCLMLLMGTVHCQIVSTQINKPPGTNGGGSSRRRRKLRKPVGSDGSRDAGSWSSSDKTNKGDKQLEPTSIINSLFGMLFRRRLRRVKLVADKGTETESGVSSVYSGIKHRLSRSEYRLLHFKERERLSDGEKSHRDGCTRTGGISDELSSEEDAEAMAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357536..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1357536-1380530:1
so has part: feature:1357536-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_038235410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1357536-1357580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1361914-1362072:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1380510-1380530:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X1
translation: MAARGRDAIAWYQKKIGAYDQQIWEKSIEQTEMKGFKNKPQKKGHIQPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGIVRVVFFPLFSRWWIQVTSQRIFMWLLVLYLMQVIAVMLYFMIPVASASEIIGPMCLMLLMGTVHCQIVSTQINKPPGTNGGGSSRRRRKLRKPVGSDGSRDAGSWSSSDKTNKGDKQLEPTSIINSLFGMLFRRRLRRVKLVADKGTETESGVSSVYSGIKHRLSRSEYRLLHFKERERLSDGEKSHRDGCTRTGGISDELSSEEDAEAMAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357536..1357580,1359357..1359413,1360754..1360823,1361914..1362072,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1357536-1380530:1
so has part: feature:1357536-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1361914-1362072:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_043356562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1357536-1357580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1361914-1362072:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1380510-1380530:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X2
translation: MAARGRDAIAWYQKKIGAYDQQIWEKSIEQTEMKGFKNKPQKKGHIQPDLIDVDLIRVIAVMLYFMIPVASASEIIGPMCLMLLMGTVHCQIVSTQINKPPGTNGGGSSRRRRKLRKPVGSDGSRDAGSWSSSDKTNKGDKQLEPTSIINSLFGMLFRRRLRRVKLVADKGTETESGVSSVYSGIKHRLSRSEYRLLHFKERERLSDGEKSHRDGCTRTGGISDELSSEEDAEAMAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357536..1357580,1359357..1359413,1360754..1360823,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1357536-1380530:1
so has part: feature:1357536-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_043356563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1357536-1357580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1380510-1380530:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X2
translation: MAARGRDAIAWYQKKIGAYDQQIWEKSIEQTEMKGFKNKPQKKGHIQPDLIDVDLIRVIAVMLYFMIPVASASEIIGPMCLMLLMGTVHCQIVSTQINKPPGTNGGGSSRRRRKLRKPVGSDGSRDAGSWSSSDKTNKGDKQLEPTSIINSLFGMLFRRRLRRVKLVADKGTETESGVSSVYSGIKHRLSRSEYRLLHFKERERLSDGEKSHRDGCTRTGGISDELSSEEDAEAMAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1357536..1357580,1359357..1359413,1360754..1360823,1363934..1364099,1366026..1366166,1366995..1367154,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1357536-1380530:1
so has part: feature:1357536-1357580:1:exon
so has part: feature:1359357-1359413:1:exon
so has part: feature:1360754-1360823:1:exon
so has part: feature:1363934-1364099:1:exon
so has part: feature:1366026-1366166:1:exon
so has part: feature:1366995-1367154:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_043356564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1357536-1357580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1359357-1359413:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1360754-1360823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1363934-1364099:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1366026-1366166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1366995-1367154:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1380510-1380530:1:exon

PHTF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PHTF1
product: putative homeodomain transcription factor 1, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379484.2
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1366029..1366166,1368087..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1383062)
location: region:1366029-1383062:1
so has part: feature:1366029-1366166:1:exon
so has part: feature:1368087-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1383062:1:exon

position:1366029:1
position: 1366029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1366029-1366166:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1368087-1368260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1380510-1383062:1:exon

PHTF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PHTF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PHTF1 isoform X3
translation: MAQRILLRRSVEGASSDNSYEDKNRKPLTTSNQSVSQVNQAIKGTRESDSVVESELDSTAFSQESRSCFSGGSQSCSVSRRDSESTRHDSETEDMLWDDLLHGPECRSSYTSDSEEGNVKGNKRDLKDDVFQQNHLFWLQNTSPASAKVSALIWEGSECKKVDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLACLPFLYRLFHSKNLEQLQSISVKELLNIFCGAPTITPVIVLAVINFLERLCLTWMFFFMMRVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLALSIAFICCAQVLKGHKTFLNAAYNWEFLIWETALLLFLLRLASLGSETNKKYSNISILLTEQINLYLKMEKKPNKKEQLSLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAISGVISDLLGFNIRLWKIKP
SIO_010081: PHTF1
subclass of: SO_0000673
so part of: PHTF1
location: join(1368150..1368260,1368344..1368421,1369852..1370061,1373986..1374114,1375475..1375747,1376510..1376641,1376869..1376955,1377545..1377700,1379245..1379340,1379979..1380104,1380510..1380530)
location: region:1368150-1380530:1
so has part: feature:1368150-1368260:1:exon
so has part: feature:1368344-1368421:1:exon
so has part: feature:1369852-1370061:1:exon
so has part: feature:1373986-1374114:1:exon
so has part: feature:1375475-1375747:1:exon
so has part: feature:1376510-1376641:1:exon
so has part: feature:1376869-1376955:1:exon
so has part: feature:1377545-1377700:1:exon
so has part: feature:1379245-1379340:1:exon
so has part: feature:1379979-1380104:1:exon
so has part: feature:1380510-1380530:1:exon

XP_038235412.1
type: Protein
SIO_000068: ncbiprotein

position:1368150:1
position: 1368150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1368150-1368260:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1368344-1368421:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1369852-1370061:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1373986-1374114:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1375475-1375747:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376510-1376641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376869-1376955:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1377545-1377700:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1379245-1379340:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1379979-1380104:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1380510-1380530:1:exon

MAGI3
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1383286..1581533)
location: region:1383286-1581533:-1
so has part: feature:1383286-1581533:-1:exon
subclass of: SO_0000010

119846192
type: Gene
SIO_000068: ncbigene

position:1383286:-1
position: 1383286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1581533:-1
position: 1581533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1383286-1581533:-1:exon

MAGI3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MAGI3
product: membrane associated guanylate kinase, WW and PDZ domain containing 3, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500625.1
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1383286..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1472397..1472513,1581115..1581532))
location: region:1383286-1581532:-1
so has part: feature:1581115-1581532:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1383286-1385640:-1:exon

position:1581532:-1
position: 1581532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581532:-1:exon

position:1581115:-1
position: 1581115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

position:1472397:-1
position: 1472397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1472513:-1
position: 1472513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1458183-1458392:-1:exon

position:1458183:-1
position: 1458183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1458392:-1
position: 1458392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1457131-1457305:-1:exon

position:1457131:-1
position: 1457131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1457305:-1
position: 1457305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1454766-1454845:-1:exon

position:1454766:-1
position: 1454766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1454845:-1
position: 1454845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1449835-1449892:-1:exon

position:1449835:-1
position: 1449835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1449892:-1
position: 1449892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1434005-1434099:-1:exon

position:1434005:-1
position: 1434005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1434099:-1
position: 1434099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1431895-1432089:-1:exon

position:1431895:-1
position: 1431895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1432089:-1
position: 1432089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1423136-1423744:-1:exon

position:1423136:-1
position: 1423136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1423744:-1
position: 1423744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1420460-1420491:-1:exon

position:1420460:-1
position: 1420460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1420491:-1
position: 1420491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1416236-1416392:-1:exon

position:1416236:-1
position: 1416236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1416392:-1
position: 1416392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1412392-1412483:-1:exon

position:1412392:-1
position: 1412392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1412483:-1
position: 1412483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1409185-1409377:-1:exon

position:1409185:-1
position: 1409185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409377:-1
position: 1409377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1406874-1407062:-1:exon

position:1406874:-1
position: 1406874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1407062:-1
position: 1407062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1399479-1399664:-1:exon

position:1399479:-1
position: 1399479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1399664:-1
position: 1399664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1395503-1395605:-1:exon

position:1395503:-1
position: 1395503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1395605:-1
position: 1395605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1393788-1393914:-1:exon

position:1393788:-1
position: 1393788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1393914:-1
position: 1393914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1392200-1392343:-1:exon

position:1392200:-1
position: 1392200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1392343:-1
position: 1392343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1387898-1388036:-1:exon

position:1387898:-1
position: 1387898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1388036:-1
position: 1388036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1383286-1385640:-1:exon

position:1385640:-1
position: 1385640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAGI3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MAGI3
product: membrane associated guanylate kinase, WW and PDZ domain containing 3, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379478.2
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1383286..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432083,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581532))
location: region:1383286-1581532:-1
so has part: feature:1581115-1581532:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432083:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1383286-1385640:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581532:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

position:1463754:-1
position: 1463754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1463873:-1
position: 1463873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432083:-1:exon

position:1432083:-1
position: 1432083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1383286-1385640:-1:exon

MAGI3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MAGI3
product: membrane associated guanylate kinase, WW and PDZ domain containing 3, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500623.1
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1383286..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581532))
location: region:1383286-1581532:-1
so has part: feature:1581115-1581532:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1383286-1385640:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581532:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432089:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1383286-1385640:-1:exon

MAGI3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X3
translation: MSKTLRKKRHWLSKVQECAVSWGPPQPGGAPDPDLLRGGAELGEFPYLGGRLLLGELGGPGPQLLSGKPPSPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDAESQRKRTTSVSKMQRMDSSLPEEEEEEEKEAVNGSGGAENKERHSDSSDWMKPVPSYNQTSSSMDFRNYLSRDESLEPLPKNWEMAYTDTGMVYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDVGSSKPGAEPEKSLFTRDPAQLTGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGSCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYLLPDDNEDPAVDIITATPIINGQPMTKGDICITSQDLIPGTVILDQNGKPGHILVNGRLNSPSMDPNEQRISVSSPGGSQPELITIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCHGLRKGDVIQEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPAKTAKVKADKQENSGSLEAISDSIPQPMPFPPAAVRSGSPKLDPSEVYLKSKTIFEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGISVKGKSHKQVLDLMTSAARNGQVLLTVRRKIIFGVEKQPEEEESQLPISTQNGSPRLNRVEVTSRQSPEAYDVLLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADQCGKLKVGDRISAVNGQSIIELSHDSIVQLIKDAGHMVTLTVIAEEEHRGPPSGTNSAKQSPAPQHRPMGTTQANSATADRGVTEDEAGRELSNSYRLPWPEHKHLPQPDGGVLSIVGSRHSQSLGCSPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVVLLLRPGTGLIPDHGDQDSFNLSSSNIIYDEQPPLPTSAVCDLPVLEESLANVHISEKLEEAKNTVPEKKSTLTENQSKLTHLSSTQEHMKRWDQPISLDLVTDDNIRRERAESPKQLGTSGELQQAGLHSPRRSDTQNTHSTLSDQSEQPRRGENTHTQINLKETSRRNRGRSASPQKHPKKEEESGDKSDKLLDSQDKTAGGGGVETIEWFKDGNEKSGVTQQDTKQNIAGKNKWAQERKNPRADEKTLPLNKANEPNKRVDEDEKANAGDPSSSNFKTASLSAVSQLSKEKKGRLQTQDPVILNKDHTEKDLEPTDETKDDGISKPECSSPVKKAPITPGPWKVPSASKVTKATGVTEKRV
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1384589..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1472397..1472513,1581115..1581445))
location: region:1384589-1581445:-1
so has part: feature:1581115-1581445:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1384589-1385640:-1:exon

XP_043356560.1
type: Protein
SIO_000068: ncbiprotein

position:1384589:-1
position: 1384589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1581445:-1
position: 1581445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581445:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1431895-1432089:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1384589-1385640:-1:exon

MAGI3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X2
translation: MSKTLRKKRHWLSKVQECAVSWGPPQPGGAPDPDLLRGGAELGEFPYLGGRLLLGELGGPGPQLLSGKPPSPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFIPVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDAESQRKRTTSVSKMQRMDSSLPEEEEEEEKEAVNGSGGAENKERHSDSSDWMKPVPSYNQTSSSMDFRNYLSRDESLEPLPKNWEMAYTDTGMVYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDVGSSKPEPEKSLFTRDPAQLTGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGSCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYLLPDDNEDPAVDIITATPIINGQPMTKGDICITSQDLIPGTVILDQNGKPGHILVNGRLNSPSMDPNEQRISVSSPGGSQPELITIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCHGLRKGDVIQEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPAKTAKVKADKQENSGSLEAISDSIPQPMPFPPAAVRSGSPKLDPSEVYLKSKTIFEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGISVKGKSHKQVLDLMTSAARNGQVLLTVRRKIIFGVEKQPEEEESQLPISTQNGSPRLNRVEVTSRQSPEAYDVLLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADQCGKLKVGDRISAVNGQSIIELSHDSIVQLIKDAGHMVTLTVIAEEEHRGPPSGTNSAKQSPAPQHRPMGTTQANSATADRGVTEDEAGRELSNSYRLPWPEHKHLPQPDGGVLSIVGSRHSQSLGCSPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVVLLLRPGTGLIPDHGDQDSFNLSSSNIIYDEQPPLPTSAVCDLPVLEESLANVHISEKLEEAKNTVPEKKSTLTENQSKLTHLSSTQEHMKRWDQPISLDLVTDDNIRRERAESPKQLGTSGELQQAGLHSPRRSDTQNTHSTLSDQSEQPRRGENTHTQINLKETSRRNRGRSASPQKHPKKEEESGDKSDKLLDSQDKTAGGGGVETIEWFKDGNEKSGVTQQDTKQNIAGKNKWAQERKNPRADEKTLPLNKANEPNKRVDEDEKANAGDPSSSNFKTASLSAVSQLSKEKKGRLQTQDPVILNKDHTEKDLEPTDETKDDGISKPECSSPVKKAPITPGPWKVPSASKVTKATGVTEKRV
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1384589..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432083,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581445))
location: region:1384589-1581445:-1
so has part: feature:1581115-1581445:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432083:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1384589-1385640:-1:exon

XP_038235406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581445:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432083:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1384589-1385640:-1:exon

MAGI3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X1
translation: MSKTLRKKRHWLSKVQECAVSWGPPQPGGAPDPDLLRGGAELGEFPYLGGRLLLGELGGPGPQLLSGKPPSPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFIPVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDAESQRKRTTSVSKMQRMDSSLPEEEEEEEKEAVNGSGGAENKERHSDSSDWMKPVPSYNQTSSSMDFRNYLSRDESLEPLPKNWEMAYTDTGMVYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDVGSSKPGAEPEKSLFTRDPAQLTGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGSCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYLLPDDNEDPAVDIITATPIINGQPMTKGDICITSQDLIPGTVILDQNGKPGHILVNGRLNSPSMDPNEQRISVSSPGGSQPELITIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCHGLRKGDVIQEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPAKTAKVKADKQENSGSLEAISDSIPQPMPFPPAAVRSGSPKLDPSEVYLKSKTIFEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGISVKGKSHKQVLDLMTSAARNGQVLLTVRRKIIFGVEKQPEEEESQLPISTQNGSPRLNRVEVTSRQSPEAYDVLLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADQCGKLKVGDRISAVNGQSIIELSHDSIVQLIKDAGHMVTLTVIAEEEHRGPPSGTNSAKQSPAPQHRPMGTTQANSATADRGVTEDEAGRELSNSYRLPWPEHKHLPQPDGGVLSIVGSRHSQSLGCSPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVVLLLRPGTGLIPDHGDQDSFNLSSSNIIYDEQPPLPTSAVCDLPVLEESLANVHISEKLEEAKNTVPEKKSTLTENQSKLTHLSSTQEHMKRWDQPISLDLVTDDNIRRERAESPKQLGTSGELQQAGLHSPRRSDTQNTHSTLSDQSEQPRRGENTHTQINLKETSRRNRGRSASPQKHPKKEEESGDKSDKLLDSQDKTAGGGGVETIEWFKDGNEKSGVTQQDTKQNIAGKNKWAQERKNPRADEKTLPLNKANEPNKRVDEDEKANAGDPSSSNFKTASLSAVSQLSKEKKGRLQTQDPVILNKDHTEKDLEPTDETKDDGISKPECSSPVKKAPITPGPWKVPSASKVTKATGVTEKRV
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1384589..1385640,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581445))
location: region:1384589-1581445:-1
so has part: feature:1581115-1581445:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1384589-1385640:-1:exon

XP_043356558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581445:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432089:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1384589-1385640:-1:exon

MAGI3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MAGI3
product: membrane associated guanylate kinase, WW and PDZ domain containing 3, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_038379479.2
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1385502..1385640,1386093..1386181,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432083,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581533))
location: region:1385502-1581533:-1
so has part: feature:1581115-1581533:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432083:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1386093-1386181:-1:exon
so has part: feature:1385502-1385640:-1:exon

position:1385502:-1
position: 1385502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581533:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432083:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386093-1386181:-1:exon

position:1386093:-1
position: 1386093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1386181:-1
position: 1386181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1385502-1385640:-1:exon

MAGI3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MAGI3
product: membrane associated guanylate kinase, WW and PDZ domain containing 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_043500626.1
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1385502..1385640,1386093..1386181,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581533))
location: region:1385502-1581533:-1
so has part: feature:1581115-1581533:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1386093-1386181:-1:exon
so has part: feature:1385502-1385640:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581533:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432089:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386093-1386181:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1385502-1385640:-1:exon

MAGI3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X5
translation: MSKTLRKKRHWLSKVQECAVSWGPPQPGGAPDPDLLRGGAELGEFPYLGGRLLLGELGGPGPQLLSGKPPSPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFIPVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDAESQRKRTTSVSKMQRMDSSLPEEEEEEEKEAVNGSGGAENKERHSDSSDWMKPVPSYNQTSSSMDFRNYLSRDESLEPLPKNWEMAYTDTGMVYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDVGSSKPEPEKSLFTRDPAQLTGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGSCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYLLPDDNEDPAVDIITATPIINGQPMTKGDICITSQDLIPGTVILDQNGKPGHILVNGRLNSPSMDPNEQRISVSSPGGSQPELITIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCHGLRKGDVIQEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPAKTAKVKADKQENSGSLEAISDSIPQPMPFPPAAVRSGSPKLDPSEVYLKSKTIFEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGISVKGKSHKQVLDLMTSAARNGQVLLTVRRKIIFGVEKQPEEEESQLPISTQNGSPRLNRVEVTSRQSPEAYDVLLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADQCGKLKVGDRISAVNGQSIIELSHDSIVQLIKDAGHMVTLTVIAEEEHRGPPSGTNSAKQSPAPQHRPMGTTQANSATADRGVTEDEAGRELSNSYRLPWPEHKHLPQPDGGVLSIVGSRHSQSLGCSPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVVLLLRPGTGLIPDHGLAPSSLCSYMKPEQH
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1386132..1386181,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432083,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581445))
location: region:1386132-1581445:-1
so has part: feature:1581115-1581445:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432083:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1386132-1386181:-1:exon

XP_038235407.1
type: Protein
SIO_000068: ncbiprotein

position:1386132:-1
position: 1386132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581445:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432083:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386132-1386181:-1:exon

MAGI3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MAGI3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X4
translation: MSKTLRKKRHWLSKVQECAVSWGPPQPGGAPDPDLLRGGAELGEFPYLGGRLLLGELGGPGPQLLSGKPPSPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFIPVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDAESQRKRTTSVSKMQRMDSSLPEEEEEEEKEAVNGSGGAENKERHSDSSDWMKPVPSYNQTSSSMDFRNYLSRDESLEPLPKNWEMAYTDTGMVYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDVGSSKPGAEPEKSLFTRDPAQLTGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGSCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYLLPDDNEDPAVDIITATPIINGQPMTKGDICITSQDLIPGTVILDQNGKPGHILVNGRLNSPSMDPNEQRISVSSPGGSQPELITIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCHGLRKGDVIQEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPAKTAKVKADKQENSGSLEAISDSIPQPMPFPPAAVRSGSPKLDPSEVYLKSKTIFEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGISVKGKSHKQVLDLMTSAARNGQVLLTVRRKIIFGVEKQPEEEESQLPISTQNGSPRLNRVEVTSRQSPEAYDVLLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADQCGKLKVGDRISAVNGQSIIELSHDSIVQLIKDAGHMVTLTVIAEEEHRGPPSGTNSAKQSPAPQHRPMGTTQANSATADRGVTEDEAGRELSNSYRLPWPEHKHLPQPDGGVLSIVGSRHSQSLGCSPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVVLLLRPGTGLIPDHGLAPSSLCSYMKPEQH
SIO_010081: MAGI3
subclass of: SO_0000673
so part of: MAGI3
location: complement(join(1386132..1386181,1387898..1388036,1392200..1392343,1393788..1393914,1395503..1395605,1399479..1399664,1406874..1407062,1409185..1409377,1412392..1412483,1416236..1416392,1420460..1420491,1423136..1423744,1431895..1432089,1434005..1434099,1449835..1449892,1454766..1454845,1457131..1457305,1458183..1458392,1463754..1463873,1472397..1472513,1581115..1581445))
location: region:1386132-1581445:-1
so has part: feature:1581115-1581445:-1:exon
so has part: feature:1472397-1472513:-1:exon
so has part: feature:1463754-1463873:-1:exon
so has part: feature:1458183-1458392:-1:exon
so has part: feature:1457131-1457305:-1:exon
so has part: feature:1454766-1454845:-1:exon
so has part: feature:1449835-1449892:-1:exon
so has part: feature:1434005-1434099:-1:exon
so has part: feature:1431895-1432089:-1:exon
so has part: feature:1423136-1423744:-1:exon
so has part: feature:1420460-1420491:-1:exon
so has part: feature:1416236-1416392:-1:exon
so has part: feature:1412392-1412483:-1:exon
so has part: feature:1409185-1409377:-1:exon
so has part: feature:1406874-1407062:-1:exon
so has part: feature:1399479-1399664:-1:exon
so has part: feature:1395503-1395605:-1:exon
so has part: feature:1393788-1393914:-1:exon
so has part: feature:1392200-1392343:-1:exon
so has part: feature:1387898-1388036:-1:exon
so has part: feature:1386132-1386181:-1:exon

XP_043356561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1581115-1581445:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472397-1472513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1463754-1463873:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458183-1458392:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1457131-1457305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454766-1454845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1449835-1449892:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1434005-1434099:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1431895-1432089:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1423136-1423744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1420460-1420491:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1416236-1416392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1412392-1412483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1409185-1409377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1406874-1407062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1399479-1399664:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1395503-1395605:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1393788-1393914:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1392200-1392343:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387898-1388036:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386132-1386181:-1:exon

LOC122457159
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457159
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1481038..1501941)
location: region:1481038-1501941:-1
so has part: feature:1481038-1501941:-1:exon
subclass of: SO_0000011

122457159
type: Gene
SIO_000068: ncbigene

position:1481038:-1
position: 1481038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1501941:-1
position: 1501941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1481038-1501941:-1:exon

LOC122457159
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457159
product: uncharacterized LOC122457159
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_006276542.1
SIO_010081: LOC122457159
subclass of: SO_0000673
so part of: LOC122457159
location: complement(join(1481038..1481049,1483478..1483481,1498708..1501941))
location: region:1481038-1501941:-1
so has part: feature:1498708-1501941:-1:exon
so has part: feature:1483478-1483481:-1:exon
so has part: feature:1481038-1481049:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1498708-1501941:-1:exon

position:1498708:-1
position: 1498708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1483478-1483481:-1:exon

position:1483478:-1
position: 1483478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1483481:-1
position: 1483481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1481038-1481049:-1:exon

position:1481049:-1
position: 1481049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846196
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846196
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1582421..1587194)
location: region:1582421-1587194:-1
so has part: feature:1582421-1587194:-1:exon
subclass of: SO_0000010

119846196
type: Gene
SIO_000068: ncbigene

position:1582421:-1
position: 1582421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1587194:-1
position: 1587194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1582421-1587194:-1:exon

LOC119846196
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LOC119846196
product: uncharacterized LOC119846196
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_043500632.1
SIO_010081: LOC119846196
subclass of: SO_0000673
so part of: LOC119846196
location: complement(join(1582421..1583161,1583387..1585799,1586523..1587194))
location: region:1582421-1587194:-1
so has part: feature:1586523-1587194:-1:exon
so has part: feature:1583387-1585799:-1:exon
so has part: feature:1582421-1583161:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1586523-1587194:-1:exon

position:1586523:-1
position: 1586523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1583387-1585799:-1:exon

position:1583387:-1
position: 1583387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1585799:-1
position: 1585799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1582421-1583161:-1:exon

position:1583161:-1
position: 1583161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846196
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LOC119846196
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119846196
translation: MSSTDPAGPQHTLVAGVPSAQGSDDQGIHLHLVALRSQGVGQEGVFFQLTSSGFVEGQGSVLEGDHDVDEDDLFLVLVGDYHIRSQLAVRPGHGGVHGDLPLARCDGFHQAVLDGVVAQLPGSGVGLAAAQDVGQGLVGVGALPSTFVSVPVADGSVEQDTVEPGAVDELPVGETGEAAPGKEMVAGVPLADSLVLVIVTI
SIO_010081: LOC119846196
subclass of: SO_0000673
so part of: LOC119846196
location: complement(join(1585768..1585799,1586523..1587096))
location: region:1585768-1587096:-1
so has part: feature:1586523-1587096:-1:exon
so has part: feature:1585768-1585799:-1:exon

XP_043356567.1
type: Protein
SIO_000068: ncbiprotein

position:1585768:-1
position: 1585768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1587096:-1
position: 1587096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1586523-1587096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1585768-1585799:-1:exon

LRIG2
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LRIG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1696453..1738780)
location: region:1696453-1738780:-1
so has part: feature:1696453-1738780:-1:exon
subclass of: SO_0000010

119846194
type: Gene
SIO_000068: ncbigene

position:1696453:-1
position: 1696453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1738780:-1
position: 1738780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1696453-1738780:-1:exon

LRIG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: LRIG2
product: leucine rich repeats and immunoglobulin like domains 2
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons
transcript id: XM_043500634.1
SIO_010081: LRIG2
subclass of: SO_0000673
so part of: LRIG2
location: complement(join(1696453..1697666,1698399..1698681,1702892..1703038,1703574..1704027,1705028..1705309,1706468..1706788,1709095..1709258,1710844..1710912,1711062..1711133,1711824..1711904,1715461..1715604,1715852..1715995,1717267..1717410,1717545..1717688,1718433..1718567,1719372..1719446,1720006..1720077,1738560..1738780))
location: region:1696453-1738780:-1
so has part: feature:1738560-1738780:-1:exon
so has part: feature:1720006-1720077:-1:exon
so has part: feature:1719372-1719446:-1:exon
so has part: feature:1718433-1718567:-1:exon
so has part: feature:1717545-1717688:-1:exon
so has part: feature:1717267-1717410:-1:exon
so has part: feature:1715852-1715995:-1:exon
so has part: feature:1715461-1715604:-1:exon
so has part: feature:1711824-1711904:-1:exon
so has part: feature:1711062-1711133:-1:exon
so has part: feature:1710844-1710912:-1:exon
so has part: feature:1709095-1709258:-1:exon
so has part: feature:1706468-1706788:-1:exon
so has part: feature:1705028-1705309:-1:exon
so has part: feature:1703574-1704027:-1:exon
so has part: feature:1702892-1703038:-1:exon
so has part: feature:1698399-1698681:-1:exon
so has part: feature:1696453-1697666:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1738560-1738780:-1:exon

position:1738560:-1
position: 1738560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1720006-1720077:-1:exon

position:1720006:-1
position: 1720006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1720077:-1
position: 1720077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1719372-1719446:-1:exon

position:1719372:-1
position: 1719372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1719446:-1
position: 1719446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1718433-1718567:-1:exon

position:1718433:-1
position: 1718433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1718567:-1
position: 1718567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1717545-1717688:-1:exon

position:1717545:-1
position: 1717545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1717688:-1
position: 1717688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1717267-1717410:-1:exon

position:1717267:-1
position: 1717267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1717410:-1
position: 1717410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1715852-1715995:-1:exon

position:1715852:-1
position: 1715852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1715995:-1
position: 1715995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1715461-1715604:-1:exon

position:1715461:-1
position: 1715461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1715604:-1
position: 1715604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1711824-1711904:-1:exon

position:1711824:-1
position: 1711824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1711904:-1
position: 1711904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1711062-1711133:-1:exon

position:1711062:-1
position: 1711062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1711133:-1
position: 1711133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1710844-1710912:-1:exon

position:1710844:-1
position: 1710844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1710912:-1
position: 1710912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1709095-1709258:-1:exon

position:1709095:-1
position: 1709095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1709258:-1
position: 1709258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1706468-1706788:-1:exon

position:1706468:-1
position: 1706468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1706788:-1
position: 1706788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1705028-1705309:-1:exon

position:1705028:-1
position: 1705028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1705309:-1
position: 1705309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1703574-1704027:-1:exon

position:1703574:-1
position: 1703574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1704027:-1
position: 1704027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1702892-1703038:-1:exon

position:1702892:-1
position: 1702892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1703038:-1
position: 1703038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1698399-1698681:-1:exon

position:1698399:-1
position: 1698399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1698681:-1
position: 1698681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1696453-1697666:-1:exon

position:1697666:-1
position: 1697666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRIG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: LRIG2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: leucine-rich repeats and immunoglobulin-like domains protein 2
translation: MRGAGSRRGALPLPLPLLLLLCGVCAAGEPPGQACAAPCSCRRGLLDCSRLRLPGGPGAGRRRIPPLPAGTTGLDLSHNHLLSSNWSIGLPIHTLQEVKMNYNELSEIPYFGEPTSNITILSLVHNTIPEINAEQLQLYLLLENLDLSSNLISEIKASSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLVVVKLNRNRISMIPPKIFKLPHVQFLELKRNRIKIVESLTFQGLESLKSLKMQRNGISKLMDGAFFGLDNMEELELEHNNLTEINKGWLYGLRTLQQLYISQNAINRISPDAWEFCQRLSELDLSYNQLTRLDESTFVGLGLLEKLNLGDNRIIHIADGVFKWLSNLQTLDLRNNEISWAIEDSNEAFAGLSRLNKLILQGNQIKSITKKAFSGLEALEHLDLNNNAIMSIQENAFAQTHFTELMLNTSSLLCDCQLKWLLQWLIDSHLQQAVNVSCAYPEWLAGQSILNVNPEDFVCDDFPKPHIRVHPESTIALRGMNVTLTCTAVSTSDSPMSTAWRKDSEVLYDADVENFARYQQQDGEVLEYTTVLHLFNVNFTDEGKYQCIVTNHFGSNYSNKAKLTVNELPSFLKTPMDLTIRTGAMARLECAAEGHPPPQISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNIAGGLSANATLTVLETPSFVRPLEDRTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLTVTERHFFAAANQLLIIVDAGLEDAGKYTCIMSNTLGTERGHIYLNVLSSPNCDSSQSGILHEEDGWTTVGIVIIVVVCCVVGTSLVWVIVIYHMRRKSEDYSITNTGREMNLPADIPSYLSSKXNSSEPQEGYSNSEAGSHQQLMPPVNGYVHKGTDGGTGPLVICSXCYDNANIYSRTREYCPYAYITEEDPLDHTLSSLMVQVPKETYPPTTQHEASALIVLXADREMSAFLTHHDKINEKKLSAQQTNNEPFQLPLWGLNRDLGLSRTHFPQQQSVHEEAPQALRSEGVIDGDREQAVSPRPCHRLREHNFDFNRTWNIQEFGEAT
SIO_010081: LRIG2
subclass of: SO_0000673
so part of: LRIG2
location: complement(join(1697434..1697666,1698399..1698681,1702892..1703038,1703574..1704027,1705028..1705309,1706468..1706788,1709095..1709258,1710844..1710912,1711062..1711133,1711824..1711904,1715461..1715604,1715852..1715995,1717267..1717410,1717545..1717688,1718433..1718567,1719372..1719446,1720006..1720077,1738560..1738780))
location: region:1697434-1738780:-1
so has part: feature:1738560-1738780:-1:exon
so has part: feature:1720006-1720077:-1:exon
so has part: feature:1719372-1719446:-1:exon
so has part: feature:1718433-1718567:-1:exon
so has part: feature:1717545-1717688:-1:exon
so has part: feature:1717267-1717410:-1:exon
so has part: feature:1715852-1715995:-1:exon
so has part: feature:1715461-1715604:-1:exon
so has part: feature:1711824-1711904:-1:exon
so has part: feature:1711062-1711133:-1:exon
so has part: feature:1710844-1710912:-1:exon
so has part: feature:1709095-1709258:-1:exon
so has part: feature:1706468-1706788:-1:exon
so has part: feature:1705028-1705309:-1:exon
so has part: feature:1703574-1704027:-1:exon
so has part: feature:1702892-1703038:-1:exon
so has part: feature:1698399-1698681:-1:exon
so has part: feature:1697434-1697666:-1:exon

XP_043356569.1
type: Protein
SIO_000068: ncbiprotein

position:1697434:-1
position: 1697434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1738560-1738780:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1720006-1720077:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1719372-1719446:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1718433-1718567:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1717545-1717688:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1717267-1717410:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1715852-1715995:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1715461-1715604:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1711824-1711904:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1711062-1711133:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1710844-1710912:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1709095-1709258:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1706468-1706788:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1705028-1705309:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1703574-1704027:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1702892-1703038:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1698399-1698681:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1697434-1697666:-1:exon

LOC122457167
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457167
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1730599..1735502)
location: region:1730599-1735502:-1
so has part: feature:1730599-1735502:-1:exon
subclass of: SO_0000011

122457167
type: Gene
SIO_000068: ncbigene

position:1730599:-1
position: 1730599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1735502:-1
position: 1735502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1730599-1735502:-1:exon

LOC122457167
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457167
product: uncharacterized LOC122457167
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276554.1
SIO_010081: LOC122457167
subclass of: SO_0000673
so part of: LOC122457167
location: complement(join(1730599..1732175,1734706..1735502))
location: region:1730599-1735502:-1
so has part: feature:1734706-1735502:-1:exon
so has part: feature:1730599-1732175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1734706-1735502:-1:exon

position:1734706:-1
position: 1734706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1730599-1732175:-1:exon

position:1732175:-1
position: 1732175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119846197
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC119846197
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1738793..1788723
location: region:1738793-1788723:1
so has part: feature:1738793-1788723:1:exon
subclass of: SO_0000011

119846197
type: Gene
SIO_000068: ncbigene

position:1738793:1
position: 1738793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1788723:1
position: 1788723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1738793-1788723:1:exon

LOC119846197
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846197
product: uncharacterized LOC119846197, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005289789.2
SIO_010081: LOC119846197
subclass of: SO_0000673
so part of: LOC119846197
location: join(1738793..1738953,1751828..1751993,1752851..1753105,1753613..1753699,1787905..1788723)
location: region:1738793-1788723:1
so has part: feature:1738793-1738953:1:exon
so has part: feature:1751828-1751993:1:exon
so has part: feature:1752851-1753105:1:exon
so has part: feature:1753613-1753699:1:exon
so has part: feature:1787905-1788723:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1738793-1738953:1:exon

position:1738953:1
position: 1738953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1751828-1751993:1:exon

position:1751828:1
position: 1751828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1751993:1
position: 1751993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1752851-1753105:1:exon

position:1752851:1
position: 1752851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1753105:1
position: 1753105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1753613-1753699:1:exon

position:1753613:1
position: 1753613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1753699:1
position: 1753699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1787905-1788723:1:exon

position:1787905:1
position: 1787905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119846197
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC119846197
product: uncharacterized LOC119846197, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005289788.2
SIO_010081: LOC119846197
subclass of: SO_0000673
so part of: LOC119846197
location: join(1738793..1738953,1751828..1751993,1752851..1753105,1753613..1753699,1763997..1764064,1765369..1767986)
location: region:1738793-1767986:1
so has part: feature:1738793-1738953:1:exon
so has part: feature:1751828-1751993:1:exon
so has part: feature:1752851-1753105:1:exon
so has part: feature:1753613-1753699:1:exon
so has part: feature:1763997-1764064:1:exon
so has part: feature:1765369-1767986:1:exon

position:1767986:1
position: 1767986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1738793-1738953:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1751828-1751993:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1752851-1753105:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1753613-1753699:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1763997-1764064:1:exon

position:1763997:1
position: 1763997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1764064:1
position: 1764064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1765369-1767986:1:exon

position:1765369:1
position: 1765369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC16A1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1794545..1828835
location: region:1794545-1828835:1
so has part: feature:1794545-1828835:1:exon
subclass of: SO_0000010

119846195
type: Gene
SIO_000068: ncbigene

position:1794545:1
position: 1794545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1828835:1
position: 1828835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1794545-1828835:1:exon

SLC16A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SLC16A1
product: solute carrier family 16 member 1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500631.1
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1794545..1794652,1799789..1799899,1803552..1803607,1817640..1817897,1824483..1824626,1825136..1826008,1826804..1828835)
location: region:1794545-1828835:1
so has part: feature:1794545-1794652:1:exon
so has part: feature:1799789-1799899:1:exon
so has part: feature:1803552-1803607:1:exon
so has part: feature:1817640-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1828835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1794545-1794652:1:exon

position:1794652:1
position: 1794652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1799789-1799899:1:exon

position:1799789:1
position: 1799789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1799899:1
position: 1799899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1803552-1803607:1:exon

position:1803552:1
position: 1803552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1803607:1
position: 1803607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1817640-1817897:1:exon

position:1817640:1
position: 1817640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1817897:1
position: 1817897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1824483-1824626:1:exon

position:1824483:1
position: 1824483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1824626:1
position: 1824626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1825136-1826008:1:exon

position:1825136:1
position: 1825136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1826008:1
position: 1826008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1826804-1828835:1:exon

position:1826804:1
position: 1826804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC16A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SLC16A1
product: solute carrier family 16 member 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379488.2
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1794545..1794652,1803552..1803607,1817640..1817897,1824483..1824626,1825136..1826008,1826804..1828835)
location: region:1794545-1828835:1
so has part: feature:1794545-1794652:1:exon
so has part: feature:1803552-1803607:1:exon
so has part: feature:1817640-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1828835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1794545-1794652:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1803552-1803607:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1817640-1817897:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1826804-1828835:1:exon

SLC16A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SLC16A1
product: solute carrier family 16 member 1, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379487.2
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1794576..1794652,1817640..1817897,1824483..1824626,1825136..1826008,1826804..1828835)
location: region:1794576-1828835:1
so has part: feature:1794576-1794652:1:exon
so has part: feature:1817640-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1828835:1:exon

position:1794576:1
position: 1794576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1794576-1794652:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1817640-1817897:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1826804-1828835:1:exon

SLC16A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SLC16A1
product: solute carrier family 16 member 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379489.2
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1794597..1794652,1812701..1812859,1817640..1817897,1824483..1824626,1825136..1826008,1826804..1828835)
location: region:1794597-1828835:1
so has part: feature:1794597-1794652:1:exon
so has part: feature:1812701-1812859:1:exon
so has part: feature:1817640-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1828835:1:exon

position:1794597:1
position: 1794597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1794597-1794652:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1812701-1812859:1:exon

position:1812701:1
position: 1812701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1812859:1
position: 1812859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1817640-1817897:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1826804-1828835:1:exon

SLC16A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: SLC16A1
product: solute carrier family 16 member 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038379492.2
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1794612..1794652,1803552..1803607,1807090..1807184,1817640..1817897,1824483..1824626,1825136..1826008,1826804..1828835)
location: region:1794612-1828835:1
so has part: feature:1794612-1794652:1:exon
so has part: feature:1803552-1803607:1:exon
so has part: feature:1807090-1807184:1:exon
so has part: feature:1817640-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1828835:1:exon

position:1794612:1
position: 1794612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1794612-1794652:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1803552-1803607:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1807090-1807184:1:exon

position:1807090:1
position: 1807090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1807184:1
position: 1807184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1817640-1817897:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1826804-1828835:1:exon

SLC16A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: monocarboxylate transporter 1
translation: MPPAIGGPQGYTPPEGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEVIFDASSSKVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVEELYFCVGVVGGLGLAFNLNPALTMIGKYFFKKRPLANGLAMAGSPVFLSTLAPLNQFFFSIFGWRGSFLILGGLLLNCCVAGSLMRPIGPKPDQLKKEVTKEVLQEAGKSAMKADEGAGDASMDLIAGKTKKQKLTVYQTINKFLDLSLFTHRGFLLYLSGNVIMFFGLFTPLVFLSNYAKSKEFGNESAAFLLSILAFVDMVARPSMGLVANTKWVRPRIQYFFAVSVVYNGVCHLLAPFSTTYAGFCVYAGFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPVLLGPPLLGKLNDMYGDYKYTYWSCGIILIVSGIYLFVGMGINYRLLEKEQKAEDKLRNKGREEETNIDEVEKQKDAEKQKEANNDVANVQQKNTEDGIKEEESRM
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1817681..1817897,1824483..1824626,1825136..1826008,1826804..1827099)
location: region:1817681-1827099:1
so has part: feature:1817681-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1827099:1:exon

XP_038235415.1
type: Protein
SIO_000068: ncbiprotein

position:1817681:1
position: 1817681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1827099:1
position: 1827099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1817681-1817897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1826804-1827099:1:exon

SLC16A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: monocarboxylate transporter 1
translation: MPPAIGGPQGYTPPEGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEVIFDASSSKVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVEELYFCVGVVGGLGLAFNLNPALTMIGKYFFKKRPLANGLAMAGSPVFLSTLAPLNQFFFSIFGWRGSFLILGGLLLNCCVAGSLMRPIGPKPDQLKKEVTKEVLQEAGKSAMKADEGAGDASMDLIAGKTKKQKLTVYQTINKFLDLSLFTHRGFLLYLSGNVIMFFGLFTPLVFLSNYAKSKEFGNESAAFLLSILAFVDMVARPSMGLVANTKWVRPRIQYFFAVSVVYNGVCHLLAPFSTTYAGFCVYAGFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPVLLGPPLLGKLNDMYGDYKYTYWSCGIILIVSGIYLFVGMGINYRLLEKEQKAEDKLRNKGREEETNIDEVEKQKDAEKQKEANNDVANVQQKNTEDGIKEEESRM
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1817681..1817897,1824483..1824626,1825136..1826008,1826804..1827099)
location: region:1817681-1827099:1
so has part: feature:1817681-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1827099:1:exon

XP_038235416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1817681-1817897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1826804-1827099:1:exon

SLC16A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: monocarboxylate transporter 1
translation: MPPAIGGPQGYTPPEGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEVIFDASSSKVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVEELYFCVGVVGGLGLAFNLNPALTMIGKYFFKKRPLANGLAMAGSPVFLSTLAPLNQFFFSIFGWRGSFLILGGLLLNCCVAGSLMRPIGPKPDQLKKEVTKEVLQEAGKSAMKADEGAGDASMDLIAGKTKKQKLTVYQTINKFLDLSLFTHRGFLLYLSGNVIMFFGLFTPLVFLSNYAKSKEFGNESAAFLLSILAFVDMVARPSMGLVANTKWVRPRIQYFFAVSVVYNGVCHLLAPFSTTYAGFCVYAGFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPVLLGPPLLGKLNDMYGDYKYTYWSCGIILIVSGIYLFVGMGINYRLLEKEQKAEDKLRNKGREEETNIDEVEKQKDAEKQKEANNDVANVQQKNTEDGIKEEESRM
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1817681..1817897,1824483..1824626,1825136..1826008,1826804..1827099)
location: region:1817681-1827099:1
so has part: feature:1817681-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1827099:1:exon

XP_038235417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1817681-1817897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1826804-1827099:1:exon

SLC16A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: monocarboxylate transporter 1
translation: MPPAIGGPQGYTPPEGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEVIFDASSSKVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVEELYFCVGVVGGLGLAFNLNPALTMIGKYFFKKRPLANGLAMAGSPVFLSTLAPLNQFFFSIFGWRGSFLILGGLLLNCCVAGSLMRPIGPKPDQLKKEVTKEVLQEAGKSAMKADEGAGDASMDLIAGKTKKQKLTVYQTINKFLDLSLFTHRGFLLYLSGNVIMFFGLFTPLVFLSNYAKSKEFGNESAAFLLSILAFVDMVARPSMGLVANTKWVRPRIQYFFAVSVVYNGVCHLLAPFSTTYAGFCVYAGFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPVLLGPPLLGKLNDMYGDYKYTYWSCGIILIVSGIYLFVGMGINYRLLEKEQKAEDKLRNKGREEETNIDEVEKQKDAEKQKEANNDVANVQQKNTEDGIKEEESRM
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1817681..1817897,1824483..1824626,1825136..1826008,1826804..1827099)
location: region:1817681-1827099:1
so has part: feature:1817681-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1827099:1:exon

XP_038235420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1817681-1817897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1826804-1827099:1:exon

SLC16A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: SLC16A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: monocarboxylate transporter 1
translation: MPPAIGGPQGYTPPEGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEVIFDASSSKVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVEELYFCVGVVGGLGLAFNLNPALTMIGKYFFKKRPLANGLAMAGSPVFLSTLAPLNQFFFSIFGWRGSFLILGGLLLNCCVAGSLMRPIGPKPDQLKKEVTKEVLQEAGKSAMKADEGAGDASMDLIAGKTKKQKLTVYQTINKFLDLSLFTHRGFLLYLSGNVIMFFGLFTPLVFLSNYAKSKEFGNESAAFLLSILAFVDMVARPSMGLVANTKWVRPRIQYFFAVSVVYNGVCHLLAPFSTTYAGFCVYAGFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPVLLGPPLLGKLNDMYGDYKYTYWSCGIILIVSGIYLFVGMGINYRLLEKEQKAEDKLRNKGREEETNIDEVEKQKDAEKQKEANNDVANVQQKNTEDGIKEEESRM
SIO_010081: SLC16A1
subclass of: SO_0000673
so part of: SLC16A1
location: join(1817681..1817897,1824483..1824626,1825136..1826008,1826804..1827099)
location: region:1817681-1827099:1
so has part: feature:1817681-1817897:1:exon
so has part: feature:1824483-1824626:1:exon
so has part: feature:1825136-1826008:1:exon
so has part: feature:1826804-1827099:1:exon

XP_043356566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1817681-1817897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1824483-1824626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1825136-1826008:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1826804-1827099:1:exon

LOC122457166
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457166
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1820179..1824109
location: region:1820179-1824109:1
so has part: feature:1820179-1824109:1:exon
subclass of: SO_0000011

122457166
type: Gene
SIO_000068: ncbigene

position:1820179:1
position: 1820179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1824109:1
position: 1824109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1820179-1824109:1:exon

LOC122457166
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457166
product: uncharacterized LOC122457166
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276553.1
SIO_010081: LOC122457166
subclass of: SO_0000673
so part of: LOC122457166
location: join(1820179..1820253,1820564..1824109)
location: region:1820179-1824109:1
so has part: feature:1820179-1820253:1:exon
so has part: feature:1820564-1824109:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1820179-1820253:1:exon

position:1820253:1
position: 1820253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1820564-1824109:1:exon

position:1820564:1
position: 1820564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122457165
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457165
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1844205..1859496
location: region:1844205-1859496:1
so has part: feature:1844205-1859496:1:exon
subclass of: SO_0000011

122457165
type: Gene
SIO_000068: ncbigene

position:1844205:1
position: 1844205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1859496:1
position: 1859496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1844205-1859496:1:exon

LOC122457165
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457165
product: uncharacterized LOC122457165
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276552.1
SIO_010081: LOC122457165
subclass of: SO_0000673
so part of: LOC122457165
location: join(1844205..1844331,1849313..1859496)
location: region:1844205-1859496:1
so has part: feature:1844205-1844331:1:exon
so has part: feature:1849313-1859496:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1844205-1844331:1:exon

position:1844331:1
position: 1844331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1849313-1859496:1:exon

position:1849313:1
position: 1849313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122457143
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457143
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2098106..2106958
location: region:2098106-2106958:1
so has part: feature:2098106-2106958:1:exon
subclass of: SO_0000011

122457143
type: Gene
SIO_000068: ncbigene

position:2098106:1
position: 2098106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2106958:1
position: 2106958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2098106-2106958:1:exon

LOC122457143
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457143
product: uncharacterized LOC122457143, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276513.1
SIO_010081: LOC122457143
subclass of: SO_0000673
so part of: LOC122457143
location: join(2098106..2098290,2104845..2106958)
location: region:2098106-2106958:1
so has part: feature:2098106-2098290:1:exon
so has part: feature:2104845-2106958:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2098106-2098290:1:exon

position:2098290:1
position: 2098290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2104845-2106958:1:exon

position:2104845:1
position: 2104845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122457143
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457143
product: uncharacterized LOC122457143, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276514.1
SIO_010081: LOC122457143
subclass of: SO_0000673
so part of: LOC122457143
location: join(2099166..2099225,2104845..2106958)
location: region:2099166-2106958:1
so has part: feature:2099166-2099225:1:exon
so has part: feature:2104845-2106958:1:exon

position:2099166:1
position: 2099166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2099166-2099225:1:exon

position:2099225:1
position: 2099225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2104845-2106958:1:exon

TAFA3
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: TAFA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2143922..2210300)
location: region:2143922-2210300:-1
so has part: feature:2143922-2210300:-1:exon
subclass of: SO_0000010

119846514
type: Gene
SIO_000068: ncbigene

position:2143922:-1
position: 2143922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2210300:-1
position: 2210300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2143922-2210300:-1:exon

TAFA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TAFA3
product: TAFA chemokine like family member 3, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380303.2
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2143922..2145942,2150390..2150514,2156748..2156897,2176506..2176621,2177537..2177625,2201510..2201664,2210061..2210300))
location: region:2143922-2210300:-1
so has part: feature:2210061-2210300:-1:exon
so has part: feature:2201510-2201664:-1:exon
so has part: feature:2177537-2177625:-1:exon
so has part: feature:2176506-2176621:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2143922-2145942:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2210061-2210300:-1:exon

position:2210061:-1
position: 2210061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2201510-2201664:-1:exon

position:2201510:-1
position: 2201510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2201664:-1
position: 2201664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2177537-2177625:-1:exon

position:2177537:-1
position: 2177537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2177625:-1
position: 2177625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2176506-2176621:-1:exon

position:2176506:-1
position: 2176506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2176621:-1
position: 2176621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2156748-2156897:-1:exon

position:2156748:-1
position: 2156748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2156897:-1
position: 2156897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2150390-2150514:-1:exon

position:2150390:-1
position: 2150390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2150514:-1
position: 2150514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2143922-2145942:-1:exon

position:2145942:-1
position: 2145942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TAFA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TAFA3
product: TAFA chemokine like family member 3, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380302.2
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2143922..2145942,2150390..2150514,2156748..2156897,2176506..2176621,2177537..2177625,2210061..2210297))
location: region:2143922-2210297:-1
so has part: feature:2210061-2210297:-1:exon
so has part: feature:2177537-2177625:-1:exon
so has part: feature:2176506-2176621:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2143922-2145942:-1:exon

position:2210297:-1
position: 2210297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2210061-2210297:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2177537-2177625:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2176506-2176621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2156748-2156897:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2150390-2150514:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2143922-2145942:-1:exon

TAFA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: TAFA3
product: TAFA chemokine like family member 3, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043500476.1
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2143922..2145942,2150390..2150514,2156748..2156897,2176506..2176621,2177436..2177563))
location: region:2143922-2177563:-1
so has part: feature:2177436-2177563:-1:exon
so has part: feature:2176506-2176621:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2143922-2145942:-1:exon

position:2177563:-1
position: 2177563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2177436-2177563:-1:exon

position:2177436:-1
position: 2177436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2176506-2176621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2156748-2156897:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2150390-2150514:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2143922-2145942:-1:exon

TAFA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TAFA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chemokine-like protein TAFA-3 isoform X1
translation: MHRQWLRNPSKRMSERDIQSLSKWILVLTLCLITLWGRLTLASSHHRSHSVHIEPGTCEVIAAHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVLQKWWCQMEPCLEREECKVLPDLSGWSCSTGNKVKTTKVTR
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2145931..2145942,2150390..2150514,2156748..2156897,2176506..2176621,2177537..2177571))
location: region:2145931-2177571:-1
so has part: feature:2177537-2177571:-1:exon
so has part: feature:2176506-2176621:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2145931-2145942:-1:exon

XP_038236230.1
type: Protein
SIO_000068: ncbiprotein

position:2145931:-1
position: 2145931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2177571:-1
position: 2177571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2177537-2177571:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2176506-2176621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2156748-2156897:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2150390-2150514:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2145931-2145942:-1:exon

TAFA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TAFA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chemokine-like protein TAFA-3 isoform X1
translation: MHRQWLRNPSKRMSERDIQSLSKWILVLTLCLITLWGRLTLASSHHRSHSVHIEPGTCEVIAAHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVLQKWWCQMEPCLEREECKVLPDLSGWSCSTGNKVKTTKVTR
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2145931..2145942,2150390..2150514,2156748..2156897,2176506..2176621,2177537..2177571))
location: region:2145931-2177571:-1
so has part: feature:2177537-2177571:-1:exon
so has part: feature:2176506-2176621:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2145931-2145942:-1:exon

XP_038236231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2177537-2177571:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2176506-2176621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2156748-2156897:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2150390-2150514:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2145931-2145942:-1:exon

TAFA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: TAFA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chemokine-like protein TAFA-3 isoform X2
translation: MSERDIQSLSKWILVLTLCLITLWGRLTLASSHHRSHSVHIEPGTCEVIAAHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVLQKWWCQMEPCLEREECKVLPDLSGWSCSTGNKVKTTKVTR
SIO_010081: TAFA3
subclass of: SO_0000673
so part of: TAFA3
location: complement(join(2145931..2145942,2150390..2150514,2156748..2156897,2176506..2176620))
location: region:2145931-2176620:-1
so has part: feature:2176506-2176620:-1:exon
so has part: feature:2156748-2156897:-1:exon
so has part: feature:2150390-2150514:-1:exon
so has part: feature:2145931-2145942:-1:exon

XP_043356411.1
type: Protein
SIO_000068: ncbiprotein

position:2176620:-1
position: 2176620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2176506-2176620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2156748-2156897:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2150390-2150514:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2145931-2145942:-1:exon

PPM1J
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: PPM1J
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2238725..2239782
location: region:2238725-2239782:1
so has part: feature:2238725-2239782:1:exon
subclass of: SO_0000010

122457130
type: Gene
SIO_000068: ncbigene

position:2238725:1
position: 2238725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2239782:1
position: 2239782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2238725-2239782:1:exon

PPM1J
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: PPM1J
product: protein phosphatase, Mg2+/Mn2+ dependent 1J
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_043500472.1
SIO_010081: PPM1J
subclass of: SO_0000673
so part of: PPM1J
location: join(2238725..2238972,2239676..2239782)
location: region:2238725-2239782:1
so has part: feature:2238725-2238972:1:exon
so has part: feature:2239676-2239782:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2238725-2238972:1:exon

position:2238972:1
position: 2238972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2239676-2239782:1:exon

position:2239676:1
position: 2239676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPM1J
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: PPM1J
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1J
translation: MLGRVRTAVARLVGGLGPAPGAQPPGDSPAPPRVPPGPAASPDRPFCSSPRRSCGGRPITRARAVQSPREPRRRLPWSTGYAEGLALCKSAALRLVPIGSTRGEQSRARSRV
SIO_010081: PPM1J
subclass of: SO_0000673
so part of: PPM1J
location: join(2238725..2238972,2239676..2239766)
location: region:2238725-2239766:1
so has part: feature:2238725-2238972:1:exon
so has part: feature:2239676-2239766:1:exon

XP_043356407.1
type: Protein
SIO_000068: ncbiprotein

position:2239766:1
position: 2239766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2238725-2238972:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2239676-2239766:1:exon

MOV10
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: MOV10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2239882..2253951)
location: region:2239882-2253951:-1
so has part: feature:2239882-2253951:-1:exon
subclass of: SO_0000010

119846558
type: Gene
SIO_000068: ncbigene

position:2239882:-1
position: 2239882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2253951:-1
position: 2253951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2239882-2253951:-1:exon

MOV10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: MOV10
product: Mov10 RISC complex RNA helicase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 long SRA reads, 1 Protein, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_038380376.2
SIO_010081: MOV10
subclass of: SO_0000673
so part of: MOV10
location: complement(join(2239882..2240275,2240808..2240999,2241119..2241236,2241644..2241746,2242185..2242304,2242648..2242745,2243207..2243310,2243845..2244006,2244121..2244268,2244374..2244550,2244904..2245058,2245224..2245386,2245800..2245898,2247564..2247804,2248352..2248590,2249041..2249159,2249656..2249752,2252534..2253951))
location: region:2239882-2253951:-1
so has part: feature:2252534-2253951:-1:exon
so has part: feature:2249656-2249752:-1:exon
so has part: feature:2249041-2249159:-1:exon
so has part: feature:2248352-2248590:-1:exon
so has part: feature:2247564-2247804:-1:exon
so has part: feature:2245800-2245898:-1:exon
so has part: feature:2245224-2245386:-1:exon
so has part: feature:2244904-2245058:-1:exon
so has part: feature:2244374-2244550:-1:exon
so has part: feature:2244121-2244268:-1:exon
so has part: feature:2243845-2244006:-1:exon
so has part: feature:2243207-2243310:-1:exon
so has part: feature:2242648-2242745:-1:exon
so has part: feature:2242185-2242304:-1:exon
so has part: feature:2241644-2241746:-1:exon
so has part: feature:2241119-2241236:-1:exon
so has part: feature:2240808-2240999:-1:exon
so has part: feature:2239882-2240275:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2252534-2253951:-1:exon

position:2252534:-1
position: 2252534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2249656-2249752:-1:exon

position:2249656:-1
position: 2249656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2249752:-1
position: 2249752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2249041-2249159:-1:exon

position:2249041:-1
position: 2249041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2249159:-1
position: 2249159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2248352-2248590:-1:exon

position:2248352:-1
position: 2248352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2248590:-1
position: 2248590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2247564-2247804:-1:exon

position:2247564:-1
position: 2247564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2247804:-1
position: 2247804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2245800-2245898:-1:exon

position:2245800:-1
position: 2245800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2245898:-1
position: 2245898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2245224-2245386:-1:exon

position:2245224:-1
position: 2245224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2245386:-1
position: 2245386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2244904-2245058:-1:exon

position:2244904:-1
position: 2244904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2245058:-1
position: 2245058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2244374-2244550:-1:exon

position:2244374:-1
position: 2244374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2244550:-1
position: 2244550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2244121-2244268:-1:exon

position:2244121:-1
position: 2244121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2244268:-1
position: 2244268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2243845-2244006:-1:exon

position:2243845:-1
position: 2243845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2244006:-1
position: 2244006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2243207-2243310:-1:exon

position:2243207:-1
position: 2243207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2243310:-1
position: 2243310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2242648-2242745:-1:exon

position:2242648:-1
position: 2242648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2242745:-1
position: 2242745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2242185-2242304:-1:exon

position:2242185:-1
position: 2242185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2242304:-1
position: 2242304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2241644-2241746:-1:exon

position:2241644:-1
position: 2241644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2241746:-1
position: 2241746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2241119-2241236:-1:exon

position:2241119:-1
position: 2241119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2241236:-1
position: 2241236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2240808-2240999:-1:exon

position:2240808:-1
position: 2240808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2240999:-1
position: 2240999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2239882-2240275:-1:exon

position:2240275:-1
position: 2240275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MOV10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: MOV10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: helicase MOV-10
translation: MPKFTFRERREFGDQFVQLLKDTGREAVSSREALRTIYNQEFRTRNDTKTPNFSSILFTLGQSGRAEVRGDFVRFWKVKKKVKVTNQYWTPRPEEPPTDSQEAGTDQPPHRGRAKERAEFIGGKHGVEILSEHDRGNGRIRFPVTLNEAATASIWVQNNGTEDVVLLGYRALRKQCEITFHDESKVTRQQPLVLQPGGSYLIEARCLTQYYGYFPVTVLFEFTKEQHGSFSIGRFVSAIANSRLAEQLGPTAPYRPYQANLKKTVMVTTEDGVPPDSSQHPELEQVIPLDCYNYPKDLKDTVSIERSRLQKSLAAKLQFENYKEKFQLLLHLEELQMEVDIRRYDMQDAPMVKDTQNKRLLILEVPGVAENRPSVLKGDHLFVTPSDQRTLPQHVQYKGYVHAVELEKVKLGFSLNLLKSFVNNLKFDVIFTFNRLPLRVQHRAVELAKKRNLGDVLFPSFSYGKSLLPEGSRLRLFDQSLENNQEQYDAVRQIVTGMARPAPYLIFGPPGTGKTVTMVEAIKQVVSCLKDSHILACAPSNSASDLLCQRLMRHLDKGSIYRINASSRDYRQVPEEIKPCCNWDNAQQCHVYPSKKKLQHYRVIITTLVTAGRLVTASFPKGHFSHVFIDECGHAVEPESLIAIAGILTAMDPETNTKAGQLVLAGDPKQLGPILRSPLAIEHGLEVSLLERLMLHNSLYQKGAKSYNPQFVTKLLQNYRSHAALLQIPNQQFYDGELQECADHIISYSYCTWEELPTQGFPIIFHGVSGEDQREGNSPSFFNTLEVEILVTYLKKLLQSQGKQGRSRISPKEIGIISPYRKQVEKIRLAITKMDRDLMKLPDIKELKVSPSPPIPLAAPGVTAMAWQLHPQPRPA
SIO_010081: MOV10
subclass of: SO_0000673
so part of: MOV10
location: complement(join(2240114..2240275,2240808..2240999,2241119..2241236,2241644..2241746,2242185..2242304,2242648..2242745,2243207..2243310,2243845..2244006,2244121..2244268,2244374..2244550,2244904..2245058,2245224..2245386,2245800..2245898,2247564..2247804,2248352..2248590,2249041..2249159,2249656..2249752,2252534..2252667))
location: region:2240114-2252667:-1
so has part: feature:2252534-2252667:-1:exon
so has part: feature:2249656-2249752:-1:exon
so has part: feature:2249041-2249159:-1:exon
so has part: feature:2248352-2248590:-1:exon
so has part: feature:2247564-2247804:-1:exon
so has part: feature:2245800-2245898:-1:exon
so has part: feature:2245224-2245386:-1:exon
so has part: feature:2244904-2245058:-1:exon
so has part: feature:2244374-2244550:-1:exon
so has part: feature:2244121-2244268:-1:exon
so has part: feature:2243845-2244006:-1:exon
so has part: feature:2243207-2243310:-1:exon
so has part: feature:2242648-2242745:-1:exon
so has part: feature:2242185-2242304:-1:exon
so has part: feature:2241644-2241746:-1:exon
so has part: feature:2241119-2241236:-1:exon
so has part: feature:2240808-2240999:-1:exon
so has part: feature:2240114-2240275:-1:exon

XP_038236304.1
type: Protein
SIO_000068: ncbiprotein

position:2240114:-1
position: 2240114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2252667:-1
position: 2252667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2252534-2252667:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2249656-2249752:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2249041-2249159:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2248352-2248590:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2247564-2247804:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2245800-2245898:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2245224-2245386:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2244904-2245058:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2244374-2244550:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2244121-2244268:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2243845-2244006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2243207-2243310:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2242648-2242745:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2242185-2242304:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2241644-2241746:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2241119-2241236:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2240808-2240999:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2240114-2240275:-1:exon

CAPZA1
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: CAPZA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2262013..2277967)
location: region:2262013-2277967:-1
so has part: feature:2262013-2277967:-1:exon
subclass of: SO_0000010

119846459
type: Gene
SIO_000068: ncbigene

position:2262013:-1
position: 2262013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2277967:-1
position: 2277967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2262013-2277967:-1:exon

CAPZA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: CAPZA1
product: capping actin protein of muscle Z-line subunit alpha 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_038380140.2
SIO_010081: CAPZA1
subclass of: SO_0000673
so part of: CAPZA1
location: complement(join(2262013..2263104,2264268..2264330,2265119..2265190,2266089..2266167,2266572..2266651,2267327..2267533,2268989..2269052,2270077..2270128,2271621..2271684,2277759..2277967))
location: region:2262013-2277967:-1
so has part: feature:2277759-2277967:-1:exon
so has part: feature:2271621-2271684:-1:exon
so has part: feature:2270077-2270128:-1:exon
so has part: feature:2268989-2269052:-1:exon
so has part: feature:2267327-2267533:-1:exon
so has part: feature:2266572-2266651:-1:exon
so has part: feature:2266089-2266167:-1:exon
so has part: feature:2265119-2265190:-1:exon
so has part: feature:2264268-2264330:-1:exon
so has part: feature:2262013-2263104:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2277759-2277967:-1:exon

position:2277759:-1
position: 2277759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2271621-2271684:-1:exon

position:2271621:-1
position: 2271621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2271684:-1
position: 2271684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2270077-2270128:-1:exon

position:2270077:-1
position: 2270077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2270128:-1
position: 2270128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2268989-2269052:-1:exon

position:2268989:-1
position: 2268989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2269052:-1
position: 2269052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2267327-2267533:-1:exon

position:2267327:-1
position: 2267327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2267533:-1
position: 2267533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2266572-2266651:-1:exon

position:2266572:-1
position: 2266572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2266651:-1
position: 2266651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2266089-2266167:-1:exon

position:2266089:-1
position: 2266089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2266167:-1
position: 2266167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2265119-2265190:-1:exon

position:2265119:-1
position: 2265119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2265190:-1
position: 2265190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2264268-2264330:-1:exon

position:2264268:-1
position: 2264268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2264330:-1
position: 2264330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2262013-2263104:-1:exon

position:2263104:-1
position: 2263104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CAPZA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: CAPZA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-actin-capping protein subunit alpha-1
translation: MADFEDRVSDEEKVHIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKLSFKFDHLRKEAGDPLPEDTEAALKPWRDACDSVLRAYVKDHYPNGICTVYGKTVDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPATQVVAVLKIQVHYYEDGNVQLVSHKDIQDSLTVSNDIQTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA
SIO_010081: CAPZA1
subclass of: SO_0000673
so part of: CAPZA1
location: complement(join(2262964..2263104,2264268..2264330,2265119..2265190,2266089..2266167,2266572..2266651,2267327..2267533,2268989..2269052,2270077..2270128,2271621..2271684,2277759..2277797))
location: region:2262964-2277797:-1
so has part: feature:2277759-2277797:-1:exon
so has part: feature:2271621-2271684:-1:exon
so has part: feature:2270077-2270128:-1:exon
so has part: feature:2268989-2269052:-1:exon
so has part: feature:2267327-2267533:-1:exon
so has part: feature:2266572-2266651:-1:exon
so has part: feature:2266089-2266167:-1:exon
so has part: feature:2265119-2265190:-1:exon
so has part: feature:2264268-2264330:-1:exon
so has part: feature:2262964-2263104:-1:exon

XP_038236068.1
type: Protein
SIO_000068: ncbiprotein

position:2262964:-1
position: 2262964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2277797:-1
position: 2277797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2277759-2277797:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2271621-2271684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2270077-2270128:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2268989-2269052:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2267327-2267533:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2266572-2266651:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2266089-2266167:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2265119-2265190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2264268-2264330:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2262964-2263104:-1:exon

LOC122457157
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: LOC122457157
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2274990..2276498
location: region:2274990-2276498:1
so has part: feature:2274990-2276498:1:exon
subclass of: SO_0000011

122457157
type: Gene
SIO_000068: ncbigene

position:2274990:1
position: 2274990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2276498:1
position: 2276498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2274990-2276498:1:exon

LOC122457157
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27794
nc RNA class: lncRNA
gene: LOC122457157
product: uncharacterized LOC122457157
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_006276538.1
SIO_010081: LOC122457157
subclass of: SO_0000673
so part of: LOC122457157
location: join(2274990..2275259,2275343..2275479,2276458..2276498)
location: region:2274990-2276498:1
so has part: feature:2274990-2275259:1:exon
so has part: feature:2275343-2275479:1:exon
so has part: feature:2276458-2276498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2274990-2275259:1:exon

position:2275259:1
position: 2275259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2275343-2275479:1:exon

position:2275343:1
position: 2275343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2275479:1
position: 2275479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2276458-2276498:1:exon

position:2276458:1
position: 2276458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ST7L
type: Gene
subclass of: SO_0000704
RO_0002162: 27794
gene: ST7L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2278788..2310979
location: region:2278788-2310979:1
so has part: feature:2278788-2310979:1:exon
subclass of: SO_0000010

119846190
type: Gene
SIO_000068: ncbigene

position:2278788:1
position: 2278788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2310979:1
position: 2310979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2278788-2310979:1:exon

ST7L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27794
gene: ST7L
product: suppression of tumorigenicity 7 like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon
transcript id: XM_038379477.2
SIO_010081: ST7L
subclass of: SO_0000673
so part of: ST7L
location: join(2278788..2279010,2284640..2284722,2286434..2286596,2287651..2287705,2288479..2288594,2291691..2291769,2292600..2292753,2293094,2293503..2293600,2294652..2294766,2296494..2296566,2297370..2297471,2305401..2305551,2306924..2307016,2310679..2310979)
location: region:2278788-2310979:1
so has part: feature:2278788-2279010:1:exon
so has part: feature:2284640-2284722:1:exon
so has part: feature:2286434-2286596:1:exon
so has part: feature:2287651-2287705:1:exon
so has part: feature:2288479-2288594:1:exon
so has part: feature:2291691-2291769:1:exon
so has part: feature:2292600-2292753:1:exon
so has part: feature:2293094-2293094:1:exon
so has part: feature:2293503-2293600:1:exon
so has part: feature:2294652-2294766:1:exon
so has part: feature:2296494-2296566:1:exon
so has part: feature:2297370-2297471:1:exon
so has part: feature:2305401-2305551:1:exon
so has part: feature:2306924-2307016:1:exon
so has part: feature:2310679-2310979:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2278788-2279010:1:exon

position:2279010:1
position: 2279010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2284640-2284722:1:exon

position:2284640:1
position: 2284640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2284722:1
position: 2284722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2286434-2286596:1:exon

position:2286434:1
position: 2286434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2286596:1
position: 2286596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2287651-2287705:1:exon

position:2287651:1
position: 2287651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2287705:1
position: 2287705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2288479-2288594:1:exon

position:2288479:1
position: 2288479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2288594:1
position: 2288594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2291691-2291769:1:exon

position:2291691:1
position: 2291691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2291769:1
position: 2291769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2292600-2292753:1:exon

position:2292600:1
position: 2292600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2292753:1
position: 2292753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2293094-2293094:1:exon

position:2293094:1
position: 2293094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2293503-2293600:1:exon

position:2293503:1
position: 2293503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2293600:1
position: 2293600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2294652-2294766:1:exon

position:2294652:1
position: 2294652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2294766:1
position: 2294766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2296494-2296566:1:exon

position:2296494:1
position: 2296494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2296566:1
position: 2296566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2297370-2297471:1:exon

position:2297370:1
position: 2297370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2297471:1
position: 2297471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2305401-2305551:1:exon

position:2305401:1
position: 2305401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2305551:1
position: 2305551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2306924-2307016:1:exon

position:2306924:1
position: 2306924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2307016:1
position: 2307016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2310679-2310979:1:exon

position:2310679:1
position: 2310679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ST7L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27794
gene: ST7L
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: suppressor of tumorigenicity 7 protein-like
translation: MAEGGSGEAAPAAQPEDSPCAPGRWERLRRRGAGLAAVPWARALGLLAALGLLYWLRVPLRLRDNLAAVTVFLSTLTPKFYVALTGTSSLISGLIFIFEWWYFQKYGTSFIEQVSVSHLRPLIGGIENSPSVPGFSDNNGEIETNRQSLSECKVWRNPLNLFRGSEYNRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDSLRPSDTVMQKAWRERNPQARIKAAYQALELNNDCATAYVLLAEEEATTITDAEKYLNKALKAGETVYRTSQHCHPQNSQHERSLRRDTNVLVYVKRRLAMCARKLGRIKEAVKMMRDLMKEFPLLSMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKARAVSDRFSPETASRRGLSTAEXNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAVAYAFFHLQHWKRIEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHDVSVYPQKELPFFIHFTAGLCSFSAMLAVLTHQFPELMVIFAKAVSIVQSRTCLEYL
SIO_010081: ST7L
subclass of: SO_0000673
so part of: ST7L
location: join(2278806..2279010,2284640..2284722,2286434..2286596,2287651..2287705,2288479..2288594,2291691..2291769,2292600..2292753,2293094,2293503..2293600,2294652..2294766,2296494..2296566,2297370..2297471,2305401..2305551,2306924..2307016,2310679..2310862)
location: region:2278806-2310862:1
so has part: feature:2278806-2279010:1:exon
so has part: feature:2284640-2284722:1:exon
so has part: feature:2286434-2286596:1:exon
so has part: feature:2287651-2287705:1:exon
so has part: feature:2288479-2288594:1:exon
so has part: feature:2291691-2291769:1:exon
so has part: feature:2292600-2292753:1:exon
so has part: feature:2293094-2293094:1:exon
so has part: feature:2293503-2293600:1:exon
so has part: feature:2294652-2294766:1:exon
so has part: feature:2296494-2296566:1:exon
so has part: feature:2297370-2297471:1:exon
so has part: feature:2305401-2305551:1:exon
so has part: feature:2306924-2307016:1:exon
so has part: feature:2310679-2310862:1:exon

XP_038235405.1
type: Protein
SIO_000068: ncbiprotein

position:2278806:1
position: 2278806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2310862:1
position: 2310862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2278806-2279010:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2284640-2284722:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2286434-2286596:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2287651-2287705:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2288479-2288594:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2291691-2291769:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2292600-2292753:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2293094-2293094:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2293503-2293600:1:exon