Pectobacterium parvum strain FN20211 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium.
High-Quality Complete Genome Resource of Pectobacterium parvum Isolate FN20211 Causing Aerial Stem Rot of Potato
Submitted (17-NOV-2021) Plant Pathology, Hebei Agricultural University, Lekai South Street 2596, Baoding, Hebei 071001, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP087393.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-NOV-2021\nAssembly Method :: HGAP v. OCT-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 750.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/02/2023 00:23:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,271\nCDSs (total) :: 4,166\nGenes (coding) :: 4,002\nCDSs (with protein) :: 4,002\nGenes (RNA) :: 105\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 6\nPseudo Genes (total) :: 164\nCDSs (without protein) :: 164\nPseudo Genes (ambiguous residues) :: 0 of 164\nPseudo Genes (frameshifted) :: 75 of 164\nPseudo Genes (incomplete) :: 106 of 164\nPseudo Genes (internal stop) :: 51 of 164\nPseudo Genes (multiple problems) :: 60 of 164\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009112017.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019454714.1
COORDINATES: similar to AA sequence:RefSeq:WP_010848996.1
COORDINATES: similar to AA sequence:RefSeq:WP_001089474.1
COORDINATES: similar to AA sequence:RefSeq:WP_010848978.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008091974.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001314450.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004249586.1
COORDINATES: similar to AA sequence:RefSeq:WP_006705960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008806992.1
helix-turn-helix transcriptional regulator