Mesorhizobium onobrychidis strain OM4 plasmid pOM4, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Mesorhizobium.
Rhizobia associated with sainfoin plants
Submitted (26-SEP-2020) AG Thuenen, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), PB, EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP062230.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly.3 v. SMRT Portal version\n 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70x\nSequencing Technology :: PacBio and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/29/2022 17:53:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,369\nCDSs (total) :: 7,299\nGenes (coding) :: 6,932\nCDSs (with protein) :: 6,932\nGenes (RNA) :: 70\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 5\nPseudo Genes (total) :: 367\nCDSs (without protein) :: 367\nPseudo Genes (ambiguous residues) :: 0 of 367\nPseudo Genes (frameshifted) :: 199 of 367\nPseudo Genes (incomplete) :: 245 of 367\nPseudo Genes (internal stop) :: 35 of 367\nPseudo Genes (multiple problems) :: 102 of 367\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mesorhizobium onobrychidis
COORDINATES: similar to AA sequence:RefSeq:WP_008127127.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007635905.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916134.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241803.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968171.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200234.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018329044.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339596.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996849.1
COORDINATES: similar to AA sequence:RefSeq:WP_018994472.1
COORDINATES: protein motif:HMM:NF039475.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011579036.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836647.1
COORDINATES: similar to AA sequence:RefSeq:WP_012111292.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006834162.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068208.1
TM0106 family RecB-like putative nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008534080.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600752.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023662.1
COORDINATES: similar to AA sequence:RefSeq:WP_014748264.1
COORDINATES: protein motif:HMM:NF024580.2
COORDINATES: similar to AA sequence:RefSeq:WP_020158713.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_008840405.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008840406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008872065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840408.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845298.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_014531058.1
COORDINATES: similar to AA sequence:RefSeq:WP_017273444.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319225.1
COORDINATES: similar to AA sequence:RefSeq:WP_019857315.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431133.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006204390.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316697.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916122.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015734.1
COORDINATES: similar to AA sequence:RefSeq:WP_019330366.1
COORDINATES: similar to AA sequence:RefSeq:WP_012948507.1
COORDINATES: protein motif:HMM:NF018841.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018431406.1
COORDINATES: similar to AA sequence:RefSeq:WP_010976102.1
COORDINATES: similar to AA sequence:RefSeq:WP_003527892.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517678.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817932.1
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_011112884.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014764604.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015338.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008839700.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612399.1
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024487.2
C-terminal helicase domain-containing protein
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF036537.2
COORDINATES: protein motif:HMM:NF019135.2
COORDINATES: similar to AA sequence:RefSeq:WP_013845299.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840412.1
COORDINATES: protein motif:HMM:NF017050.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008185789.1
COORDINATES: protein motif:HMM:NF022135.2
COORDINATES: similar to AA sequence:RefSeq:WP_014892990.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611490.1
COORDINATES: similar to AA sequence:RefSeq:WP_003380664.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654927.1
COORDINATES: protein motif:HMM:NF025839.2
COORDINATES: similar to AA sequence:RefSeq:WP_013895446.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876431.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205860.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018644859.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982856.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210779.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_011982854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982853.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845311.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982852.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531075.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971088.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_014531077.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971086.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653024.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845318.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330886.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241466.1
COORDINATES: similar to AA sequence:RefSeq:WP_011971081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327239.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332645.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326167.1
COORDINATES: similar to AA sequence:RefSeq:WP_007463306.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553159.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537746.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653149.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611557.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976703.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_071831742.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528241.1
COORDINATES: protein motif:HMM:NF012350.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014795.2
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF014214.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330303.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881324.1
COORDINATES: similar to AA sequence:RefSeq:WP_003534459.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264315.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330298.1
zincin-like metallopeptidase domain-containing protein