Roseomonas haemaphysalidis strain 546 plasmid p546-5.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
Submitted (03-SEP-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061182.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 23:50:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,580\nCDSs (total) :: 4,516\nGenes (coding) :: 4,480\nCDSs (with protein) :: 4,480\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 15 of 36\nPseudo Genes (incomplete) :: 26 of 36\nPseudo Genes (internal stop) :: 7 of 36\nPseudo Genes (multiple problems) :: 10 of 36\n##Genome-Annotation-Data-END##
type strain of Roseomonas haemaphysalidis
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017116.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF007277.0
GO:0009307 - DNA restriction-modification system [Evidence IEA]
5-methylcytosine-specific restriction endonuclease system specificity protein McrC
COORDINATES: protein motif:HMM:NF023524.2
COORDINATES: similar to AA sequence:RefSeq:WP_007560635.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012813325.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF016163.2
COORDINATES: similar to AA sequence:RefSeq:WP_006552809.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_007427728.1
COORDINATES: protein motif:HMM:NF018525.2
COORDINATES: similar to AA sequence:RefSeq:WP_006470666.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017978032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010161579.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_007967576.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556082.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_007552943.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611370.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
GO:0004803 - transposase activity [Evidence IEA]