Roseomonas marmotae strain 1318 plasmid p1318-8.
type: Entry
definition: Roseomonas marmotae strain 1318 plasmid p1318-8.
sequence version: NZ_CP061099.1
sequence date: 2023-02-11
sequence: sequence
division: CON
label: NZ_CP061099.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15936121
keyword: RefSeq
source: Roseomonas marmotae
organism: Roseomonas marmotae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP061099.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. SMRT Link v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 00:10:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,598\nCDSs (total) :: 4,525\nGenes (coding) :: 4,419\nCDSs (with protein) :: 4,419\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 50 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 15 of 106\nPseudo Genes (multiple problems) :: 27 of 106\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 31285
topology: linear
so has quality: SO_0000987
location: 1..31285
location: region:1-31285:1
RO_0002162: 2768161

NZ_CP061099
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15936121
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Zhu, W.
journal: Submitted (02-SEP-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31285:1
position: 31285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31285:1:source
so part of: sequence
organism: Roseomonas marmotae
mol type: genomic DNA
strain: 1318
host: Marmota himalayana
type material: type strain of Roseomonas marmotae
plasmid: p1318-8
country: China: Qinghai province
collection date: 2018-08

2768161
type: Taxonomy
SIO_000068: taxonomy

IAI58_RS22760
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22760
old locus tag: IAI58_22745
so part of: sequence
location: 145..894
location: region:145-894:1
so has part: feature:145-894:1:exon
subclass of: SO_0000010

position:145:1
position: 145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:894:1
position: 894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145-894:1:exon

IAI58_RS22760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22760
old locus tag: IAI58_22745
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKVLVTASRKGGSGKTVVTRHLAVAALRSGIGRVAIVDLDPMHGLSRWWQRRPEDGLELVQLAPEGMPSSTHEDRAAAALAAAQQLDGAIPALRAQGYGLLLIDTPPAADEIVRLAVRAADLVLVPVRPSPDDLDAVGETADLVAGLDRPMVFIINSATKRARLTGDAAVALSQHGTVAPSTLHRSDAYAASALDGLTVQESDPRGAPAAEVSALWGYVTKRAGLLTSEPANKITKQPVLRVVSGRKGK
SIO_010081: IAI58_RS22760
subclass of: SO_0000673
so part of: IAI58_RS22760
location: 145..894
location: region:145-894:1
so has part: feature:145-894:1:exon

WP_207451444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:145-894:1:exon

IAI58_RS22765
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22765
old locus tag: IAI58_22750
so part of: sequence
location: 900..1271
location: region:900-1271:1
so has part: feature:900-1271:1:exon
subclass of: SO_0000010

position:900:1
position: 900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1271:1
position: 1271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:900-1271:1:exon

IAI58_RS22765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22765
old locus tag: IAI58_22750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKQPTRLSSFSIPREPANLQEAPAAEAPVVQPAPAPVPPPTPARVPPREVPPVLFQAEPVEVITPAVRHRKPKEADIPRTQVGARIPAPLADRLADYCHYERARQQDVVAEAILEFLTKKGF
SIO_010081: IAI58_RS22765
subclass of: SO_0000673
so part of: IAI58_RS22765
location: 900..1271
location: region:900-1271:1
so has part: feature:900-1271:1:exon

WP_207451442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:900-1271:1:exon

IAI58_RS22770
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22770
old locus tag: IAI58_22755
so part of: sequence
location: 1557..2492
location: region:1557-2492:1
so has part: feature:1557-2492:1:exon
subclass of: SO_0000010

position:1557:1
position: 1557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2492:1
position: 2492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557-2492:1:exon

IAI58_RS22770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22770
old locus tag: IAI58_22755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013635080.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MARVHQLLTEHGKQAAIEAGAESRDVIETAARYLSEEDNALAFAFSGWAQCALPHRRVPAGEVWEVASDRMRLVVEPGRRPSGTDGSGPLEHVGVPFGSYARLILLYLQTEALKTGSPEVELGRSWREWMSRIGVPWGGKSGRGVREQAELLSRCRLTFHLVGQGRAGLVNQQIVDRALFLDTPDGDRQGRLSLETARLSGPFFEQLQRHPIPLEEGAIKALSNNSAALDCYVWLAYRLHSLERPRLVTWSALKAQHGQGFAKLYHFKSKFPAILSMATAVYPDADIEVTEEGVILKPSKPPVKPRLTSSR
SIO_010081: IAI58_RS22770
subclass of: SO_0000673
so part of: IAI58_RS22770
location: 1557..2492
location: region:1557-2492:1
so has part: feature:1557-2492:1:exon

WP_207451440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1557-2492:1:exon

IAI58_RS22775
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22775
old locus tag: IAI58_22760
so part of: sequence
location: complement(3670..4746)
location: region:3670-4746:-1
so has part: feature:3670-4746:-1:exon
subclass of: SO_0000010

position:3670:-1
position: 3670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4746:-1
position: 4746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3670-4746:-1:exon

IAI58_RS22775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22775
old locus tag: IAI58_22760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MVGQPGFFDVDERYAVLSAAGDPLERLSAVVDFEIFRPVLKAALARSDRSRGGRPPYDGVLMFRILVLQALYSLSDEQAEFQLRDRLSFMRFVGLALHQAVPDAKTIWLYREQLKQAGAMEGLFRRFDEVLAAKGFLAMGGQIIDATLIAAPRQKLTTEEKAIIREGGTPADWSKPKRAQKDQDARWTLKRGRTKPKSEGTQRQAIQIAVPVFGYKSHIGIDRRYGLIRRWTVTDAAQHDSRSFPALLDPENTASRVWADTAYRTKRNLEVLERRGLSERIQLRRAPRRGLSEQQAKANASRARIRSGIEHVFAAQKHRMALFVRTVGIARAKVKIGMANLVYNFSRLAWLSTRTAPA
SIO_010081: IAI58_RS22775
subclass of: SO_0000673
so part of: IAI58_RS22775
location: complement(3670..4746)
location: region:3670-4746:-1
so has part: feature:3670-4746:-1:exon

WP_208776376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3670-4746:-1:exon

IAI58_RS22780
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22780
old locus tag: IAI58_22765
pseudo: true
so part of: sequence
location: complement(<4817..5014)
location: region:4817-5014:-1
so has part: feature:4817-5014:-1:exon
subclass of: SO_0000010

position:4817:-1
position: 4817
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5014:-1
position: 5014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4817-5014:-1:exon

IAI58_RS22780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22780
old locus tag: IAI58_22765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611121.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: IAI58_RS22780
subclass of: SO_0000673
so part of: IAI58_RS22780
location: complement(<4817..5014)
location: region:4817-5014:-1
so has part: feature:4817-5014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4817-5014:-1:exon

IAI58_RS22785
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
gene: clcA
locus tag: IAI58_RS22785
old locus tag: IAI58_22770
so part of: sequence
location: complement(5153..6520)
location: region:5153-6520:-1
so has part: feature:5153-6520:-1:exon
subclass of: SO_0000010

position:5153:-1
position: 5153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6520:-1
position: 6520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5153-6520:-1:exon

IAI58_RS22785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
gene: clcA
locus tag: IAI58_RS22785
old locus tag: IAI58_22770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017486984.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO process: GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H(+)/Cl(-) exchange transporter ClcA
translation: MDLAGQPDTPLRQARFVAVALVAGGLTGVFGGLFHLLIDNIIDWPQWLARHIEGWRLIGACALVTMVATVFAVFITRRFAPEAGGSGVPEIEGAIEGIRHVRWQRVLPVKFVAGVLAIGSGLVLGREGPTIHMGGSAALVATSIFGVKGVDRQALLAAGAGAGLACAFNAPMAAVLFVIEETRKQFPYTFRTYMGVFAAAVTGTAVTELISGVRPDLPLAAGMAALSSLPLFGLLGALLGVVGVLFNASIMKMLDVAAAWQKRAPYVWPAVVGLVVGALLVVAPRTVTGGERVITEIALATPGIAVLLMLAAVRFITAVSSYSTGTPGGIFAPILSLAACLGLAFGQIVQVALPEAFSGMSLTPVSFGIVAMAALFTASVRAPAVGVVLVMELTASYDLTLPTLAACLTASLVAQWLGGRPIYAQMLERTLALAGVAQQTTRSPSTGLAADPDRP
SIO_010081: IAI58_RS22785
subclass of: SO_0000673
so part of: IAI58_RS22785
location: complement(5153..6520)
location: region:5153-6520:-1
so has part: feature:5153-6520:-1:exon

WP_207451157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5153-6520:-1:exon

IAI58_RS22790
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22790
old locus tag: IAI58_22775
pseudo: true
so part of: sequence
location: complement(6791..7593)
location: region:6791-7593:-1
so has part: feature:6791-7593:-1:exon
subclass of: SO_0000010

position:6791:-1
position: 6791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7593:-1
position: 7593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6791-7593:-1:exon

IAI58_RS22790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22790
old locus tag: IAI58_22775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611187.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: IAI58_RS22790
subclass of: SO_0000673
so part of: IAI58_RS22790
location: complement(6791..7593)
location: region:6791-7593:-1
so has part: feature:6791-7593:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6791-7593:-1:exon

IAI58_RS22795
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22795
old locus tag: IAI58_22780
so part of: sequence
location: complement(8147..8959)
location: region:8147-8959:-1
so has part: feature:8147-8959:-1:exon
subclass of: SO_0000010

position:8147:-1
position: 8147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8959:-1
position: 8959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8147-8959:-1:exon

IAI58_RS22795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22795
old locus tag: IAI58_22780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012253286.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfite exporter TauE/SafE family protein
translation: MDDLLLRIIIFAVVGLVSGFVAGLFGIGGGTIRMPIFIYLFPWLGLAHPVIMHVATATSMALVIPSAIASSRKHYKLGDLDLGLFKTWSIGLLIGVAIGSILLPFGSTEILQALFSTYIILVGFYIAFSRGRFSFGQEPPKGAKMVGISSVVGFIAAMTGTSGGTLTTPILSAFNMHLERAMAISAATGLITGTVGAIGSIIGGWNAKDLPSYSLGYVDIVIFLVMMPIVMIAAPIGVRVSHKMNEQTLQLIYAILLIVVGIDLLRRLYV
SIO_010081: IAI58_RS22795
subclass of: SO_0000673
so part of: IAI58_RS22795
location: complement(8147..8959)
location: region:8147-8959:-1
so has part: feature:8147-8959:-1:exon

WP_207451159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8147-8959:-1:exon

IAI58_RS22800
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22800
old locus tag: IAI58_22785
so part of: sequence
location: complement(9289..9600)
location: region:9289-9600:-1
so has part: feature:9289-9600:-1:exon
subclass of: SO_0000010

position:9289:-1
position: 9289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9600:-1
position: 9600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9289-9600:-1:exon

IAI58_RS22800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22800
old locus tag: IAI58_22785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012455954.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKFENRLACVIKSDGTIARGYMIDKCEMKGENEYLITWKIPLQGDAKTNFAGTIGSAMEEDVQPGFITVGLTRDPSQMQVHTYDVSGKPARRSFHIACFRDQ
SIO_010081: IAI58_RS22800
subclass of: SO_0000673
so part of: IAI58_RS22800
location: complement(9289..9600)
location: region:9289-9600:-1
so has part: feature:9289-9600:-1:exon

WP_207451161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9289-9600:-1:exon

IAI58_RS22805
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22805
old locus tag: IAI58_22790
so part of: sequence
location: complement(10097..10822)
location: region:10097-10822:-1
so has part: feature:10097-10822:-1:exon
subclass of: SO_0000010

position:10097:-1
position: 10097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10822:-1
position: 10822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10097-10822:-1:exon

IAI58_RS22805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22805
old locus tag: IAI58_22790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008836388.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CbtA family protein
translation: MAILRNIVFIAALAGFVAGLAMTAMQYAGTVPLILRAETFEAAGPAHDHASQDNAIASDAADSSHSHDHEEAGWAPRDGLERSVFTALANIVTAIGFALLLVAASELTGGMTGWRQGVFWGLAGFTVFTLAPGLGLPPELPAMPAADLVQRQIWWSATALATGIGLALLVFKRSLPLAILAVSLLIAPHLVGAPQPESFESPVPHSLAQAFVVMASVTSFVFWVVLGGVAGFARSRVRATE
SIO_010081: IAI58_RS22805
subclass of: SO_0000673
so part of: IAI58_RS22805
location: complement(10097..10822)
location: region:10097-10822:-1
so has part: feature:10097-10822:-1:exon

WP_207451162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10097-10822:-1:exon

IAI58_RS22810
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22810
old locus tag: IAI58_22795
so part of: sequence
location: complement(10835..11029)
location: region:10835-11029:-1
so has part: feature:10835-11029:-1:exon
subclass of: SO_0000010

position:10835:-1
position: 10835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11029:-1
position: 11029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10835-11029:-1:exon

IAI58_RS22810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22810
old locus tag: IAI58_22795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012115746.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CbtB-domain containing protein
translation: MHTHQTHLPVQSAALSSPTSSWFIQVVCAAFLGLFVIGGAGLSHIEAIHNAAHDVRHSLGFPCH
SIO_010081: IAI58_RS22810
subclass of: SO_0000673
so part of: IAI58_RS22810
location: complement(10835..11029)
location: region:10835-11029:-1
so has part: feature:10835-11029:-1:exon

WP_207451164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10835-11029:-1:exon

IAI58_RS22815
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
gene: scnC
locus tag: IAI58_RS22815
old locus tag: IAI58_22800
so part of: sequence
location: complement(11692..12453)
location: region:11692-12453:-1
so has part: feature:11692-12453:-1:exon
subclass of: SO_0000010

position:11692:-1
position: 11692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12453:-1
position: 12453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11692-12453:-1:exon

IAI58_RS22815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
gene: scnC
locus tag: IAI58_RS22815
old locus tag: IAI58_22800
EC number: 3.5.5.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012455949.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiocyanate hydrolase subunit gamma
translation: MSEDHKHDGHDHSEHGGHDHPAAPMVDEISDFEVLELAVRELAIDKGFFTAEDHRVFSEWNDARSPAAGSRMVAKAWTDPAYKSRVFADPLAASKEVGVDWAEPTGFGTTSDYMHLTVLEDTPTVHHVIVCTLCSCYPRPLLGHSPYWYRAPNYRRRIVRWPRQVLAEFGLILPPEVELRVEDSNAKSRFMVLPVRPAGTEGWTEEQLAEIVTRDCMIGIALPRPGRTSDGPRPIYKAKRPVQSGGRPQGAAQ
SIO_010081: IAI58_RS22815
subclass of: SO_0000673
so part of: IAI58_RS22815
location: complement(11692..12453)
location: region:11692-12453:-1
so has part: feature:11692-12453:-1:exon

WP_207451166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11692-12453:-1:exon

IAI58_RS22820
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22820
old locus tag: IAI58_22805
so part of: sequence
location: complement(12490..13341)
location: region:12490-13341:-1
so has part: feature:12490-13341:-1:exon
subclass of: SO_0000010

position:12490:-1
position: 12490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13341:-1
position: 13341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12490-13341:-1:exon

IAI58_RS22820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22820
old locus tag: IAI58_22805
EC number: 4.2.1.84
inference: COORDINATES: protein motif:HMM:NF014289.2
GO function: GO:0018822 - nitrile hydratase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nitrile hydratase subunit beta
translation: MPSPSETRHIYETGTQLRPTIHQEQDWPYEVPHIRYEALIWPPHDVGGQAAAPQIFEEKEDEEWENNVYITCEVLGFRGLWNAEERRRIYANDIGLTLYYNFPYNARWIWGAAKMLVDKKYVSLIELQEKIGEIRKRLGVNAQREGHATSNISAGAQTNVTTNTGTGKTGTGNGPNYGPKAPWEGTGKIQPARFKVGDRVRVKDLPAIFYTRTQMYARNMTGTIAALTYPDLIPADEAWERYDAPQEQYYIVRFQQKDLWAEYPFENDTLQSEYPDMWLEPAN
SIO_010081: IAI58_RS22820
subclass of: SO_0000673
so part of: IAI58_RS22820
location: complement(12490..13341)
location: region:12490-13341:-1
so has part: feature:12490-13341:-1:exon

WP_207451168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12490-13341:-1:exon

IAI58_RS22825
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22825
old locus tag: IAI58_22810
pseudo: true
so part of: sequence
location: 14210..>15032
location: region:14210-15032:1
so has part: feature:14210-15032:1:exon
subclass of: SO_0000010

position:14210:1
position: 14210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15032:1
position: 15032
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14210-15032:1:exon

IAI58_RS22825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22825
old locus tag: IAI58_22810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012553267.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: IAI58_RS22825
subclass of: SO_0000673
so part of: IAI58_RS22825
location: 14210..>15032
location: region:14210-15032:1
so has part: feature:14210-15032:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14210-15032:1:exon

IAI58_RS22830
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22830
old locus tag: IAI58_22815
so part of: sequence
location: complement(15067..16287)
location: region:15067-16287:-1
so has part: feature:15067-16287:-1:exon
subclass of: SO_0000010

position:15067:-1
position: 15067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16287:-1
position: 16287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15067-16287:-1:exon

IAI58_RS22830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22830
old locus tag: IAI58_22815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007680245.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MARRKEPRIPDAILDQLLAGADARSAFEQGGLLDELKKAFAERALNAEMDHHLAGEGGEGNSRNGYGQKSVVTDSGKLALEIPRDRQASFDPQLIAKYQRRFPGFDDKVISMYARGMSAREIVGHLRELYGIDVSPDLISAVTDAVLDEIAAWQNRPLEPVYPVVFFDALRVKIRDEGLVRNKAVHIALGVRADGGKEILGLWLEQNEGAKFWLRVMNELRGRGVEDLLLAVVDGLKGFPEAIVAVFPEAVVQTCIVHLLRQSLDFVAYKDRKAVAAALKAIYQAVDATAAEAALAAFEAGFWGQKYPAIGQSWRRAWTEVVPFYAFSIEIRRFLYTTNAIEALNSKLRRAVRGRGHFPTDEAALKLLYLVLHRAEKEWTMPPREWSMAKAQFAVLFGERFTRAMA
SIO_010081: IAI58_RS22830
subclass of: SO_0000673
so part of: IAI58_RS22830
location: complement(15067..16287)
location: region:15067-16287:-1
so has part: feature:15067-16287:-1:exon

WP_208776107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15067-16287:-1:exon

IAI58_RS22835
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22835
old locus tag: IAI58_22820
pseudo: true
so part of: sequence
location: <16346..16687
location: region:16346-16687:1
so has part: feature:16346-16687:1:exon
subclass of: SO_0000010

position:16346:1
position: 16346
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16687:1
position: 16687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16346-16687:1:exon

IAI58_RS22835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22835
old locus tag: IAI58_22820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: IAI58_RS22835
subclass of: SO_0000673
so part of: IAI58_RS22835
location: <16346..16687
location: region:16346-16687:1
so has part: feature:16346-16687:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16346-16687:1:exon

IAI58_RS22840
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22840
old locus tag: IAI58_22825
so part of: sequence
location: complement(16689..16976)
location: region:16689-16976:-1
so has part: feature:16689-16976:-1:exon
subclass of: SO_0000010

position:16689:-1
position: 16689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16976:-1
position: 16976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16689-16976:-1:exon

IAI58_RS22840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22840
old locus tag: IAI58_22825
inference: COORDINATES: protein motif:HMM:NF024935.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MLHLPSRFAAVILSFVPLFFQRSWQHAEVLLIGAILAPGKRTVTSLLQISGLAQERRFVNYHRVLNRAVWSPRAASRLLLAHLIATDLSPEVPPV
SIO_010081: IAI58_RS22840
subclass of: SO_0000673
so part of: IAI58_RS22840
location: complement(16689..16976)
location: region:16689-16976:-1
so has part: feature:16689-16976:-1:exon

WP_207451313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16689-16976:-1:exon

IAI58_RS22845
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22845
old locus tag: IAI58_22830
so part of: sequence
location: complement(17069..18118)
location: region:17069-18118:-1
so has part: feature:17069-18118:-1:exon
subclass of: SO_0000010

position:17069:-1
position: 17069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18118:-1
position: 18118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17069-18118:-1:exon

IAI58_RS22845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22845
old locus tag: IAI58_22830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016267528.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2776 family protein
translation: MNYWISILFRIIPLAMGAVCLSLGLYVRTGGADPNYFVAGHVLISLAAICIALFTTAAMIIRQLTHTFSRTWMIILPVIGYSVALATMLWGVLVLQQGSVPSFVAGHVVFGVGLIAISVSTVATASSAFTLIPQNAHGRHEDGPPRDAYSTVAGVGLICIPLAATAIGFVWATMLLMREADAPDFVAGHVLMGISAICASLISLVSTVVRQVRNQFGEAERWVWTLWVLLMGTATFGWGLFVLFGSDRPERIAPGCVLLGLGMVCYSITSKVWLLALVWRRECSLANRVPLIPILTCLACLFFSTFLAEATVADPGFFVPARVLAGLGAVCFTLFSIVSILEAGTSGKG
SIO_010081: IAI58_RS22845
subclass of: SO_0000673
so part of: IAI58_RS22845
location: complement(17069..18118)
location: region:17069-18118:-1
so has part: feature:17069-18118:-1:exon

WP_207451311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17069-18118:-1:exon

IAI58_RS22850
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22850
old locus tag: IAI58_22835
pseudo: true
so part of: sequence
location: complement(18302..19030)
location: region:18302-19030:-1
so has part: feature:18302-19030:-1:exon
subclass of: SO_0000010

position:18302:-1
position: 18302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19030:-1
position: 19030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18302-19030:-1:exon

IAI58_RS22850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22850
old locus tag: IAI58_22835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: IAI58_RS22850
subclass of: SO_0000673
so part of: IAI58_RS22850
location: complement(18302..19030)
location: region:18302-19030:-1
so has part: feature:18302-19030:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18302-19030:-1:exon

IAI58_RS22855
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22855
old locus tag: IAI58_22840
so part of: sequence
location: 19560..20276
location: region:19560-20276:1
so has part: feature:19560-20276:1:exon
subclass of: SO_0000010

position:19560:1
position: 19560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20276:1
position: 20276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19560-20276:1:exon

IAI58_RS22855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22855
old locus tag: IAI58_22840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012454283.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MARKTPLKRLGGGDGVPGFIAYYRVSTDKQGASGLGLEAQQEAVERHVRAAGGRILDVFREVESGKKNDRPEIAAAIAACWSRRATLVIAKLDRLARNVAFVSNLMEAGIEFVACDNPHASRLTIHILAAVAEHEREMISARTKAALQAAKARGVRLGNPHLRAGDGGAISHATQIRIAKAAQHARDVLPAILAAQKAGCANHSQIAEALTARGIRTPAGGDIWHPVQVARILKRTSA
SIO_010081: IAI58_RS22855
subclass of: SO_0000673
so part of: IAI58_RS22855
location: 19560..20276
location: region:19560-20276:1
so has part: feature:19560-20276:1:exon

WP_207451309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19560-20276:1:exon

IAI58_RS22860
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22860
old locus tag: IAI58_22845
so part of: sequence
location: 20276..20638
location: region:20276-20638:1
so has part: feature:20276-20638:1:exon
subclass of: SO_0000010

position:20638:1
position: 20638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20276-20638:1:exon

IAI58_RS22860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22860
old locus tag: IAI58_22845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATPAKPRAKKAAPPPEATPAPAGTNHPVITDPALVKLAAEYAKAAPEKNRLEKRLKELKPVLLQAMGDAPLAYAGKLVLTRTEVLGTPDTVGEKITRSMVGQHMPGKKGRPAYVTLEVR
SIO_010081: IAI58_RS22860
subclass of: SO_0000673
so part of: IAI58_RS22860
location: 20276..20638
location: region:20276-20638:1
so has part: feature:20276-20638:1:exon

WP_207451306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20276-20638:1:exon

IAI58_RS22865
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22865
old locus tag: IAI58_22850
so part of: sequence
location: 20638..20964
location: region:20638-20964:1
so has part: feature:20638-20964:1:exon
subclass of: SO_0000010

position:20964:1
position: 20964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20638-20964:1:exon

IAI58_RS22865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22865
old locus tag: IAI58_22850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQQRTPRLPALLAGRSLAVAQRIATLDFGWRRIALDHYLTPEGEEVRAVADRSSFHIGLPLGTRIYLLDSWQLRDDWRRIDGLLQIGNLVRAPLPLVRMPRLSAAAR
SIO_010081: IAI58_RS22865
subclass of: SO_0000673
so part of: IAI58_RS22865
location: 20638..20964
location: region:20638-20964:1
so has part: feature:20638-20964:1:exon

WP_207451305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20638-20964:1:exon

IAI58_RS22870
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22870
old locus tag: IAI58_22855
so part of: sequence
location: 20964..21323
location: region:20964-21323:1
so has part: feature:20964-21323:1:exon
subclass of: SO_0000010

position:21323:1
position: 21323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20964-21323:1:exon

IAI58_RS22870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22870
old locus tag: IAI58_22855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007436948.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MGNPARRRAPLKMATQLLPAADLRTARPPPKQASDHYGTPEHRAWAAAVLRRAGSRCQGPGCDRTGTRLYADHIVELQDGGAPLALANGQALCGACHSAKTARVRAERQRTPPPPQRRP
SIO_010081: IAI58_RS22870
subclass of: SO_0000673
so part of: IAI58_RS22870
location: 20964..21323
location: region:20964-21323:1
so has part: feature:20964-21323:1:exon

WP_207451303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20964-21323:1:exon

IAI58_RS22875
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22875
old locus tag: IAI58_22860
so part of: sequence
location: complement(21759..22679)
location: region:21759-22679:-1
so has part: feature:21759-22679:-1:exon
subclass of: SO_0000010

position:21759:-1
position: 21759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22679:-1
position: 22679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21759-22679:-1:exon

IAI58_RS22875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22875
old locus tag: IAI58_22860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007005146.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MLTRAADPLDLTQLEAMAAQLAASGHYRVLRRIAPRPALTPPPGTPTRLGLLLDLETTGLDAAQDEIIEMAMLPFTYGLDGTVYAVGEPFSRLRQPTRPIPPAVTALTGLTDEQVAGQQIDPAEVAAFIAPAALIIAHNAGFDRRFAEAFCPAFVEKPWACSQRGIDWAAEGFEGSKLGYLAMRHRLFFEGHRARHDCEATLEILARPLPASGVTGLARLLEGARQPRWRIWATDAPFHHKDRLKARGYRWNAEEKGAAQPRAWFIEVAEAERAAECAFLCQEIYGREWEPVMQRITALERYSVRG
SIO_010081: IAI58_RS22875
subclass of: SO_0000673
so part of: IAI58_RS22875
location: complement(21759..22679)
location: region:21759-22679:-1
so has part: feature:21759-22679:-1:exon

WP_208776369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21759-22679:-1:exon

IAI58_RS22880
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22880
old locus tag: IAI58_22865
so part of: sequence
location: complement(22739..23416)
location: region:22739-23416:-1
so has part: feature:22739-23416:-1:exon
subclass of: SO_0000010

position:22739:-1
position: 22739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23416:-1
position: 23416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22739-23416:-1:exon

IAI58_RS22880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22880
old locus tag: IAI58_22865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006985741.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thermonuclease family protein
translation: MSCLSRLLLVASLLLSQPALAAELLGRVVGIADGDTLTLLTPERQQVKVRLYGIDAPESRQPYGTRAQQELSALAFRKEVRVVVEDTDRYGRKVGRVWAGPVDVNAELVRRGAAWVYRQYNRDPALPRLEAEARQARRGLWSLPLQEQVPPWDWRRQGSTRTAAPTNNRGGGSAPAQSSAGLSCGAKRYCSEMRDCAEARFYLQQCGLRRLDGDGDGVPCERLCR
SIO_010081: IAI58_RS22880
subclass of: SO_0000673
so part of: IAI58_RS22880
location: complement(22739..23416)
location: region:22739-23416:-1
so has part: feature:22739-23416:-1:exon

WP_208776370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22739-23416:-1:exon

IAI58_RS23225
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS23225
pseudo: true
so part of: sequence
location: 23641..>23979
location: region:23641-23979:1
so has part: feature:23641-23979:1:exon
subclass of: SO_0000010

position:23641:1
position: 23641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23979:1
position: 23979
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23641-23979:1:exon

IAI58_RS23225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS23225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007435641.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: IAI58_RS23225
subclass of: SO_0000673
so part of: IAI58_RS23225
location: 23641..>23979
location: region:23641-23979:1
so has part: feature:23641-23979:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23641-23979:1:exon

IAI58_RS22885
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22885
old locus tag: IAI58_22870
pseudo: true
so part of: sequence
location: complement(<23959..24458)
location: region:23959-24458:-1
so has part: feature:23959-24458:-1:exon
subclass of: SO_0000010

position:23959:-1
position: 23959
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:24458:-1
position: 24458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23959-24458:-1:exon

IAI58_RS22885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22885
old locus tag: IAI58_22870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: IAI58_RS22885
subclass of: SO_0000673
so part of: IAI58_RS22885
location: complement(<23959..24458)
location: region:23959-24458:-1
so has part: feature:23959-24458:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23959-24458:-1:exon

IAI58_RS22890
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22890
old locus tag: IAI58_22875
so part of: sequence
location: 24642..25667
location: region:24642-25667:1
so has part: feature:24642-25667:1:exon
subclass of: SO_0000010

position:24642:1
position: 24642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25667:1
position: 25667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24642-25667:1:exon

IAI58_RS22890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22890
old locus tag: IAI58_22875
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF020459.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GSCFA domain-containing protein
translation: MPILSLPYGDAEQRLRSNREHGRWWFAENLPVETRALGASERLKKPALELLIRPNFRMGRTSNIFTIGSCFAREIEEAMLQDGMNVVSNPAVFTQWEPRAPAGLSDTEDHIFRMGYINKYTIGTMVDELRWAAEAVPTGQHPAVQEVSKGRFADLAAHNILAGDDEAAVRARRDAMSQLMRCAFQADVIVLTLGLAEGWRDQVTGTWLVDSPLTLKPEQPERYTLEVLSFADQMAGLREIAALLDRYGRPNWRMVLTVSPVPFLATFTGDDVVVANSYSKSVLRAAAEEFTRENNRADYFPSFEMANYSDAASVWKSDRRHIQKEFVQKIVHTFRGSYLQD
SIO_010081: IAI58_RS22890
subclass of: SO_0000673
so part of: IAI58_RS22890
location: 24642..25667
location: region:24642-25667:1
so has part: feature:24642-25667:1:exon

WP_208776372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24642-25667:1:exon

IAI58_RS22895
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22895
old locus tag: IAI58_22880
so part of: sequence
location: 25786..27798
location: region:25786-27798:1
so has part: feature:25786-27798:1:exon
subclass of: SO_0000010

position:25786:1
position: 25786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27798:1
position: 27798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25786-27798:1:exon

IAI58_RS22895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22895
old locus tag: IAI58_22880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRKIIGPLALLLWLSGTTVAQQSTKSPDFPHVIVNNDLTGLDTVVLGAKRLTGPRDQALVEIANAFRTYVRMGDDTGADAQSLAVNISTFQFWANSKLYSLSDHDRFLHSLRYYSASPAGNATNPSNIRMYLSAGHDFIADFLNNNGSSRQVKILSFRLNDHHYTWNWELFNSRSRQQVLQAPHDDKPFCDRSGHSEADVENNQQWTEMSFTRYFQAFRTGVLEEALGSRCVQGMCLAPSDFNVCAHGRTCTLGQSRNAGRCGGITLDLAQPLVQRFKIMQMAEVVAEYRPAFFEIDLNRFPRHFPTDMPLAKRIVAMSSFLGEASATLRRINPAIRIGLRVPSKQRHREEIGVDLPALDRSQVSDYVILAMPAIADQQIQYQLDSAKAHTRVYAEMFQSIGAISPDQANFDSFRELAAAGYSLNQRFYPATSRSLTTAAHLAYALHEVQGIALFNSQYYAATFQDGNRRKPLQQPSQAMRRLSDPNEVSKLDQHYFLTSTHYGLSQSCSAPPASDDVCDQLPFTSRQLQAGHTFSMELAPPVQGWDMDRGILRMTVLAYPGSGKPLSSSDYAQIRSSLSVTINGKLLNEAPDNTVWPLDPEDGEQNNRYYRSMWWTAPAFNSIFKINPSSLKIGKNNLIINYNPTPHGVNRAFRVVNFEMSLPARQLR
SIO_010081: IAI58_RS22895
subclass of: SO_0000673
so part of: IAI58_RS22895
location: 25786..27798
location: region:25786-27798:1
so has part: feature:25786-27798:1:exon

WP_208776373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25786-27798:1:exon

IAI58_RS22900
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22900
old locus tag: IAI58_22885
so part of: sequence
location: 28011..28529
location: region:28011-28529:1
so has part: feature:28011-28529:1:exon
subclass of: SO_0000010

position:28011:1
position: 28011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28529:1
position: 28529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28011-28529:1:exon

IAI58_RS22900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22900
old locus tag: IAI58_22885
inference: COORDINATES: protein motif:HMM:NF017416.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MSRRRIGQEALILAPDQRGRRSSLDDLAGLIDWAPVESRLEDIHAAARGKPLWPPLALFKAMLIAVWYDLSDVKLAEALDDRASFRRFCGCSAQVPTPERTAFVRLRRELVSQGLDQVLFEAVTAQLWAKAVSVKTGTLIDATIIASASHADGEAAWTSHQKRKAIQGLSSG
SIO_010081: IAI58_RS22900
subclass of: SO_0000673
so part of: IAI58_RS22900
location: 28011..28529
location: region:28011-28529:1
so has part: feature:28011-28529:1:exon

WP_208776374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28011-28529:1:exon

IAI58_RS22905
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22905
old locus tag: IAI58_22890
pseudo: true
so part of: sequence
location: <28621..28843
location: region:28621-28843:1
so has part: feature:28621-28843:1:exon
subclass of: SO_0000010

position:28621:1
position: 28621
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:28843:1
position: 28843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28621-28843:1:exon

IAI58_RS22905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22905
old locus tag: IAI58_22890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612037.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: integrase core domain-containing protein
SIO_010081: IAI58_RS22905
subclass of: SO_0000673
so part of: IAI58_RS22905
location: <28621..28843
location: region:28621-28843:1
so has part: feature:28621-28843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28621-28843:1:exon

IAI58_RS22910
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22910
old locus tag: IAI58_22895
pseudo: true
so part of: sequence
location: <28969..29145
location: region:28969-29145:1
so has part: feature:28969-29145:1:exon
subclass of: SO_0000010

position:28969:1
position: 28969
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:29145:1
position: 29145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28969-29145:1:exon

IAI58_RS22910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22910
old locus tag: IAI58_22895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611348.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: integrase core domain-containing protein
SIO_010081: IAI58_RS22910
subclass of: SO_0000673
so part of: IAI58_RS22910
location: <28969..29145
location: region:28969-29145:1
so has part: feature:28969-29145:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28969-29145:1:exon

IAI58_RS22915
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22915
old locus tag: IAI58_22900
so part of: sequence
location: complement(29188..29991)
location: region:29188-29991:-1
so has part: feature:29188-29991:-1:exon
subclass of: SO_0000010

position:29188:-1
position: 29188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29991:-1
position: 29991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29188-29991:-1:exon

IAI58_RS22915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22915
old locus tag: IAI58_22900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAPEKYRVVSEAFPIRDAVGLAQHYIVGGCEGMLYPVAEFRAETEGRTYYRTDTHWAPHGKIVACRLLAEAAGRSPVEVALAEAAARAALVPAPSRFCGDLGRKLEPKQDEPSLNLKLPHGLRTFENGLPHDYERPVNDGRLVITESDASTARGTLLIFGDSYLHQTLTTLSFFFKRVLFCRTRWFHEEMVVMARPDMIVTQQAERYLSYVFPDSGAPAFLLIAQMLGRTPAPSQVEAIALAQALSCGRVPDLKPFEKMLPTKAAK
SIO_010081: IAI58_RS22915
subclass of: SO_0000673
so part of: IAI58_RS22915
location: complement(29188..29991)
location: region:29188-29991:-1
so has part: feature:29188-29991:-1:exon

WP_208776375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29188-29991:-1:exon

IAI58_RS22920
type: Gene
subclass of: SO_0000704
RO_0002162: 2768161
locus tag: IAI58_RS22920
old locus tag: IAI58_22905
so part of: sequence
location: 30066..31142
location: region:30066-31142:1
so has part: feature:30066-31142:1:exon
subclass of: SO_0000010

position:30066:1
position: 30066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31142:1
position: 31142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30066-31142:1:exon

IAI58_RS22920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2768161
locus tag: IAI58_RS22920
old locus tag: IAI58_22905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MADQPGFFDVDERYATLSAAGDPLERLAAVVDFEIFRPVLDAALKRSDRGRGGRPPYDAVMMFRILVLQALYSLSDEQAEFQLRDRLSFMRFAGLGLHQAVPDAKTIWLYREQLKQAGAIEGLFRRFDEVLAAKGFLAMGGQIIDATLIAAPRQQLTIEEKATIRNGGTPEGWSRAKRAQKDRDARWTLKRGRTKPKPEGTQRQAIQIAVPIFGYKSHIGIDRRHGLIRRWTVTDAAQHDSRSFVDLLDPENTASRVWADTAYRTKRNLEVLERRGLTERIQFRRPPRRQLSEQQAKANALRARIRSGIEHVFAAQKHRMRLFVRTIGIARAQVKIGMANLAYNFARLAWLSTRAAPA
SIO_010081: IAI58_RS22920
subclass of: SO_0000673
so part of: IAI58_RS22920
location: 30066..31142
location: region:30066-31142:1
so has part: feature:30066-31142:1:exon

WP_208775950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30066-31142:1:exon