Roseomonas marmotae strain 1318 plasmid p1318-4.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
Submitted (02-SEP-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061095.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. SMRT Link v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 00:10:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,598\nCDSs (total) :: 4,525\nGenes (coding) :: 4,419\nCDSs (with protein) :: 4,419\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 50 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 15 of 106\nPseudo Genes (multiple problems) :: 27 of 106\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_007005544.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007005545.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003203983.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012371.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007436013.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016122.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752023.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019415815.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385788.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538195.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385791.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_008943912.1
COORDINATES: similar to AA sequence:RefSeq:WP_007769641.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013385793.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437168.1
COORDINATES: similar to AA sequence:RefSeq:WP_006225251.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019461050.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00521
SAM riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007435514.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461139.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025431.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF016845.2
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007300291.1
COORDINATES: similar to AA sequence:RefSeq:WP_020509351.1
COORDINATES: similar to AA sequence:RefSeq:WP_020509353.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020509355.1
COORDINATES: similar to AA sequence:RefSeq:WP_020509357.1
COORDINATES: similar to AA sequence:RefSeq:WP_020509358.1
COORDINATES: protein motif:HMM:TIGR02242.1
COORDINATES: similar to AA sequence:RefSeq:WP_011384300.1
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_007436066.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007436010.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_016845655.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013053759.1
acyl-CoA dehydrogenase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: similar to AA sequence:RefSeq:WP_009720394.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018907164.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013338279.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436009.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435992.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007435991.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435990.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008491906.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009800280.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013397.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018302509.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387315.1
COORDINATES: similar to AA sequence:RefSeq:WP_018405903.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954108.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013269479.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611653.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012455796.1
COORDINATES: similar to AA sequence:RefSeq:WP_007183254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: similar to AA sequence:RefSeq:WP_017365288.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558204.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012367242.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611348.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF012257.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012521019.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007003051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012585055.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435986.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435985.1
COORDINATES: similar to AA sequence:RefSeq:WP_007003771.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007435983.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435978.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435974.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838780.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435971.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435969.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_007435967.1
COORDINATES: similar to AA sequence:RefSeq:WP_017482494.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435964.1
COORDINATES: protein motif:HMM:NF020948.2
GO:0015031 - protein transport [Evidence IEA]
EscF/YscF/HrpA family type III secretion system needle major subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007002325.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611130.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435963.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011664157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438275.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007436087.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF025173.2
COORDINATES: similar to AA sequence:RefSeq:WP_006918496.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014104984.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006225880.1
COORDINATES: similar to AA sequence:RefSeq:WP_019015794.1
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007436078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017486993.1
COORDINATES: protein motif:HMM:TIGR01444.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019462880.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436075.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436074.1
COORDINATES: similar to AA sequence:RefSeq:WP_020188222.1
COORDINATES: similar to AA sequence:RefSeq:WP_006610136.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_076611612.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011548002.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331965.1
COORDINATES: similar to AA sequence:RefSeq:WP_010687563.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434963.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007434962.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434961.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007005485.1
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007005486.1
aconitase/3-isopropylmalate dehydratase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007434958.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010969064.1
COORDINATES: similar to AA sequence:RefSeq:WP_007626441.1
COORDINATES: similar to AA sequence:RefSeq:WP_016769681.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007439638.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007439473.1
PEP-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004341325.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004341322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435519.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007158983.1
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012455797.1
COORDINATES: similar to AA sequence:RefSeq:WP_017937436.1
COORDINATES: similar to AA sequence:RefSeq:WP_003619675.1
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010514595.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568703.1
COORDINATES: protein motif:HMM:NF028169.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019719393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005519.1
COORDINATES: similar to AA sequence:RefSeq:WP_003380351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436059.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436061.1
COORDINATES: protein motif:HMM:NF017257.2
GO:0019867 - outer membrane [Evidence IEA]
GO:0030244 - cellulose biosynthetic process [Evidence IEA]
cellulose synthase subunit BcsC-related outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437279.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006051138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520329.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007438513.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438512.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462170.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014744286.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007714110.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011764888.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436032.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007436033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287995.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005188.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005191.1
COORDINATES: protein motif:HMM:NF017021.2
COORDINATES: protein motif:HMM:NF021541.2
COORDINATES: similar to AA sequence:RefSeq:WP_007436044.1
COORDINATES: similar to AA sequence:RefSeq:WP_015669400.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436045.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013167350.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdenum ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007669952.1
GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019459243.1
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018429949.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_008828985.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437557.1
COORDINATES: similar to AA sequence:RefSeq:WP_000301953.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003217664.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016244.1
COORDINATES: similar to AA sequence:RefSeq:WP_011808117.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438629.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013530.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010514510.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567055.1
phosphocholine cytidylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007282211.1
COORDINATES: similar to AA sequence:RefSeq:WP_020186893.1
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: similar to AA sequence:RefSeq:WP_019463176.1
COORDINATES: protein motif:HMM:NF021435.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_018062299.1
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF012981.2
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020186887.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565970.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_007437203.1
COORDINATES: similar to AA sequence:RefSeq:WP_005223917.1
COORDINATES: protein motif:HMM:NF024904.2
COORDINATES: similar to AA sequence:RefSeq:WP_003499686.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505041.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_011567038.1
protein-methionine-sulfoxide reductase heme-binding subunit MsrQ
COORDINATES: similar to AA sequence:RefSeq:WP_008878253.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0016667 - oxidoreductase activity, acting on a sulfur group of donors [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
protein-methionine-sulfoxide reductase catalytic subunit MsrP
COORDINATES: similar to AA sequence:RefSeq:WP_015929999.1
COORDINATES: similar to AA sequence:RefSeq:WP_008141104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930001.1
COORDINATES: similar to AA sequence:RefSeq:WP_007680980.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011085968.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944216.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631196.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930006.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015684396.1
COORDINATES: protein motif:HMM:NF013206.2
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009737300.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169170.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463211.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004367.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007438295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012270352.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438297.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012453246.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977627.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004359 - glutaminase activity [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437029.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02772.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008264130.1
COORDINATES: similar to AA sequence:RefSeq:WP_019015545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012699882.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438322.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460729.1
COORDINATES: similar to AA sequence:RefSeq:WP_011473194.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0050898 - nitrile metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014765093.1
GO:0018822 - nitrile hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008353668.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438330.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_007005543.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005542.1
COORDINATES: similar to AA sequence:RefSeq:WP_007001910.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007283054.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005551.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439111.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460750.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_019994548.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015413 - ABC-type nickel transporter activity [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0015675 - nickel cation transport [Evidence IEA]
nickel ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011389931.1
nickel ABC transporter permease subunit NikB
COORDINATES: similar to AA sequence:RefSeq:WP_015918653.1
GO:0015099 - nickel cation transmembrane transporter activity [Evidence IEA]
nickel ABC transporter permease subunit NikC
COORDINATES: similar to AA sequence:RefSeq:WP_007437553.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437554.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596115.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439113.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439114.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]