Roseomonas marmotae strain 1318 plasmid p1318-3.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
Submitted (02-SEP-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061094.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. SMRT Link v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 00:10:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,598\nCDSs (total) :: 4,525\nGenes (coding) :: 4,419\nCDSs (with protein) :: 4,419\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 50 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 15 of 106\nPseudo Genes (multiple problems) :: 27 of 106\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_007436266.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018459060.1
COORDINATES: similar to AA sequence:RefSeq:WP_009867760.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612205.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017956998.1
COORDINATES: similar to AA sequence:RefSeq:WP_003929947.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_012455797.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437362.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437361.1
COORDINATES: similar to AA sequence:RefSeq:WP_012563811.1
GO:0004311 - farnesyltranstransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019460557.1
GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434564.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011548765.1
GO:0051007 - squalene-hopene cyclase activity [Evidence IEA]
GO:0019746 - hopanoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434561.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434560.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007434558.1
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007434557.1
GO:0047304 - 2-aminoethylphosphonate-pyruvate transaminase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
2-aminoethylphosphonate--pyruvate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007434556.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007434555.1
GO:0033980 - phosphonopyruvate decarboxylase activity [Evidence IEA]
GO:0017000 - antibiotic biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434554.1
GO:0050188 - phosphoenolpyruvate mutase activity [Evidence IEA]
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434553.1
phosphocholine cytidylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008494183.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461445.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007437875.1
COORDINATES: protein motif:HMM:NF016236.2
COORDINATES: similar to AA sequence:RefSeq:WP_019014873.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008942953.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0016669 - oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor [Evidence IEA]
GO:0019417 - sulfur oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008942954.1
thiosulfate oxidation carrier complex protein SoxZ
COORDINATES: similar to AA sequence:RefSeq:WP_018263077.1
thiosulfate oxidation carrier protein SoxY
COORDINATES: similar to AA sequence:RefSeq:WP_020095603.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404347.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631079.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019014359.1
COORDINATES: protein motif:HMM:TIGR03481.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012336480.1
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_012872106.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF020137.2
COORDINATES: similar to AA sequence:RefSeq:WP_007438115.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592117.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007612988.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461946.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012385839.1
COORDINATES: similar to AA sequence:RefSeq:WP_006893923.1
COORDINATES: similar to AA sequence:RefSeq:WP_003203122.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:YP_005226622.1
COORDINATES: similar to AA sequence:RefSeq:WP_020292336.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565657.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053830.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819763.1
COORDINATES: similar to AA sequence:RefSeq:WP_018321371.1
COORDINATES: similar to AA sequence:RefSeq:WP_018321370.1
COORDINATES: similar to AA sequence:RefSeq:WP_010686999.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013157174.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009490537.1
COORDINATES: similar to AA sequence:RefSeq:WP_007765673.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755683.1
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013374689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002743.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_007195722.1
COORDINATES: similar to AA sequence:RefSeq:WP_020179928.1
COORDINATES: protein motif:HMM:NF006088.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694327.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007434981.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:TIGR00413.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_007572014.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_014684041.1
COORDINATES: similar to AA sequence:RefSeq:WP_012044601.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015929901.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076952.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439235.1
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF014906.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004673851.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494393.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007004170.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435239.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007004172.1
COORDINATES: similar to AA sequence:RefSeq:WP_013791316.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011969707.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019521.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ShET2/EspL2 family type III secretion system effector toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012453218.1
COORDINATES: similar to AA sequence:RefSeq:WP_020094903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014428557.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_009029212.1
COORDINATES: similar to AA sequence:RefSeq:WP_009029213.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576750.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435270.1
COORDINATES: similar to AA sequence:RefSeq:WP_006610743.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452277.1
COORDINATES: protein motif:HMM:NF018333.2
GO:0034639 - L-amino acid efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008973020.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005031664.1
COORDINATES: protein motif:HMM:NF024870.2
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_002995960.1
COORDINATES: protein motif:HMM:NF017116.2
COORDINATES: protein motif:HMM:NF020345.2
Mor transcription activator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009616835.1
COORDINATES: similar to AA sequence:RefSeq:WP_010922072.1
COORDINATES: protein motif:HMM:NF019114.2
COORDINATES: similar to AA sequence:RefSeq:WP_008492451.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010893236.1
COORDINATES: protein motif:HMM:TIGR01539.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF019126.2
COORDINATES: similar to AA sequence:RefSeq:WP_011097617.1
COORDINATES: similar to AA sequence:RefSeq:WP_011538636.1
COORDINATES: protein motif:HMM:TIGR01644.1
COORDINATES: similar to AA sequence:RefSeq:WP_014576181.1
COORDINATES: similar to AA sequence:RefSeq:WP_011538630.1
COORDINATES: protein motif:HMM:NF021220.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018609440.1
COORDINATES: similar to AA sequence:RefSeq:WP_004085180.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008492469.1
COORDINATES: protein motif:HMM:NF021614.2
COORDINATES: protein motif:HMM:TIGR01760.1
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: similar to AA sequence:RefSeq:WP_008492474.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006784.1
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013635080.1
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: similar to AA sequence:RefSeq:WP_015950190.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010586945.1
GO:0035550 - urease complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017482918.1
COORDINATES: similar to AA sequence:RefSeq:WP_012252940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012252939.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387954.1
COORDINATES: similar to AA sequence:RefSeq:WP_015821905.1
GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016781201.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012252935.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387958.1
GO:0015204 - urea transmembrane transporter activity [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018062728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012418880.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012453213.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_005223274.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390014.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640982.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0032778 - P-type cobalt transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018390017.1
COORDINATES: similar to AA sequence:RefSeq:WP_008140887.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012332406.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_018647715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015688269.1
COORDINATES: similar to AA sequence:RefSeq:WP_011685733.1
COORDINATES: similar to AA sequence:RefSeq:WP_012590190.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: protein motif:HMM:TIGR04559.1
quinoprotein relay system zinc metallohydrolase 2
COORDINATES: protein motif:HMM:TIGR04557.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_015665377.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012589062.1
PQQ-dependent catabolism-associated beta-propeller protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390273.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018043582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013532073.1
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR03871.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975084.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532080.1
COORDINATES: similar to AA sequence:RefSeq:WP_013165884.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846951.1
COORDINATES: similar to AA sequence:RefSeq:WP_020086277.1
GO:0048038 - quinone binding [Evidence IEA]
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_015931687.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002715001.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_019451408.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019171709.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014766066.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601389.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087835.1
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:WP_019087836.1
COORDINATES: similar to AA sequence:RefSeq:WP_007838705.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_011952621.1
COORDINATES: protein motif:HMM:NF024966.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_014074973.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287790.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138492.1
COORDINATES: protein motif:HMM:NF013757.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007436177.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_013269463.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435175.1
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: similar to AA sequence:RefSeq:WP_012331229.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016846713.1
COORDINATES: similar to AA sequence:RefSeq:WP_012113327.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016513.2
COORDINATES: similar to AA sequence:RefSeq:WP_012978099.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007436228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005540.1
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: similar to AA sequence:RefSeq:WP_007439288.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020648114.1
COORDINATES: similar to AA sequence:RefSeq:WP_019197439.1
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_007670713.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002617.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014647416.1
GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity [Evidence IEA]
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007438390.1
COORDINATES: similar to AA sequence:RefSeq:WP_003167400.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462236.1
COORDINATES: similar to AA sequence:RefSeq:WP_014647420.1
GO:0008668 - (2,3-dihydroxybenzoyl)adenylate synthase activity [Evidence IEA]
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
(2,3-dihydroxybenzoyl)adenylate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_013168109.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007438395.1
COORDINATES: similar to AA sequence:RefSeq:WP_020092664.1
COORDINATES: similar to AA sequence:RefSeq:WP_018642602.1
COORDINATES: similar to AA sequence:RefSeq:WP_013902900.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019014053.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014054.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014055.1
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010150428.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008121639.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492491.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115997.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437634.1
COORDINATES: similar to AA sequence:RefSeq:WP_019013838.1
COORDINATES: similar to AA sequence:RefSeq:WP_019931028.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018897712.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007880136.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934134.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897715.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897717.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435181.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726491.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_013502418.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012496253.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437593.1
monovalent cation/H+ antiporter subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_012977245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437591.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_012977243.1
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_007439590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439589.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019462485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012046537.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436458.1
COORDINATES: similar to AA sequence:RefSeq:WP_012522569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462147.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012452970.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018316436.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019462151.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437231.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462149.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437226.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437217.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_020227795.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007437215.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437214.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437213.1
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_018318489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436423.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_014193570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193571.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193572.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346971.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346970.1
COORDINATES: similar to AA sequence:RefSeq:WP_012145036.1
COORDINATES: protein motif:HMM:NF024273.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024714.2
COORDINATES: similar to AA sequence:RefSeq:WP_019461384.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976881.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012252489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654084.1
COORDINATES: similar to AA sequence:RefSeq:WP_016836112.1
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: protein motif:HMM:NF027637.2
COORDINATES: similar to AA sequence:RefSeq:WP_013832393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439597.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439599.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_007439605.1
COORDINATES: similar to AA sequence:RefSeq:WP_007608666.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437383.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436271.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002721142.1
COORDINATES: protein motif:HMM:NF019174.2
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019013134.1
COORDINATES: similar to AA sequence:RefSeq:WP_007671264.1
COORDINATES: similar to AA sequence:RefSeq:WP_009515417.1
COORDINATES: similar to AA sequence:RefSeq:WP_017543503.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_020666714.1
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007424003.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019143214.1
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: similar to AA sequence:RefSeq:WP_007599648.1
COORDINATES: similar to AA sequence:RefSeq:WP_019013394.1
COORDINATES: similar to AA sequence:RefSeq:WP_012385990.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437256.1
COORDINATES: similar to AA sequence:RefSeq:WP_017995362.1
COORDINATES: similar to AA sequence:RefSeq:WP_008968749.1
COORDINATES: similar to AA sequence:RefSeq:WP_018114640.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957930.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835839.1
COORDINATES: similar to AA sequence:RefSeq:WP_018182996.1
COORDINATES: similar to AA sequence:RefSeq:WP_007591511.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462287.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009491724.1
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_019462289.1
COORDINATES: protein motif:HMM:NF015412.2
COORDINATES: similar to AA sequence:RefSeq:WP_011993009.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004282.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: similar to AA sequence:RefSeq:WP_007439312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005907.1
GO:0004340 - glucokinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019461557.1
1-phosphofructokinase family hexose kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011646570.1
COORDINATES: protein motif:HMM:NF024545.2
COORDINATES: protein motif:HMM:NF016184.2
sulfur transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017932518.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: protein motif:HMM:TIGR00684.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_011646572.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019448302.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168768.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_011475064.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_006199370.1
acetyl-CoA hydrolase/transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015929521.1
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:NF040974.1