Roseomonas marmotae strain 1318 plasmid p1318-2.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
Submitted (02-SEP-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061093.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. SMRT Link v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 00:10:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,598\nCDSs (total) :: 4,525\nGenes (coding) :: 4,419\nCDSs (with protein) :: 4,419\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 50 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 15 of 106\nPseudo Genes (multiple problems) :: 27 of 106\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_007437285.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007437287.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437288.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01222.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007437294.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437295.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0003824 - catalytic activity [Evidence IEA]
GO:0050920 - regulation of chemotaxis [Evidence IEA]
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: similar to AA sequence:RefSeq:WP_007437297.1
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007005689.1
flagellar basal body-associated FliL family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437299.1
flagellar type III secretion system protein FlhB
COORDINATES: similar to AA sequence:RefSeq:WP_007005691.1
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437301.1
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437302.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437303.1
GO:0003774 - cytoskeletal motor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_007437304.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007005696.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437306.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437307.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437308.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437309.1
GO:0044781 - bacterial-type flagellum organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007005684.1
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: similar to AA sequence:RefSeq:WP_007437317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437318.1
COORDINATES: similar to AA sequence:RefSeq:WP_012634334.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437319.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_007005676.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565448.1
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_007437324.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005672.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437327.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007006146.1
COORDINATES: similar to AA sequence:RefSeq:WP_006614450.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_007437333.1
FliM/FliN family flagellar motor switch protein
COORDINATES: protein motif:HMM:TIGR00206.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_007005666.1
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007005665.1
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437343.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005660.1
COORDINATES: similar to AA sequence:RefSeq:WP_002726579.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_007005658.1
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:NF023398.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_019906677.1
COORDINATES: similar to AA sequence:RefSeq:WP_018041849.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_018041848.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007435354.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007434752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007003202.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018648452.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014523.1
COORDINATES: similar to AA sequence:RefSeq:WP_018643168.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601614.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003807628.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018642159.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005138.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019906544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005972.1
COORDINATES: similar to AA sequence:RefSeq:WP_020086412.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013080065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601275.1
COORDINATES: similar to AA sequence:RefSeq:WP_019015315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976511.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_006227132.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013845238.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007438834.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007437358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005513.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437421.1
COORDINATES: similar to AA sequence:RefSeq:WP_012382917.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437282.1