Streptomyces genisteinicus strain CRPJ-33 plasmid unnamed3.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (28-AUG-2020) School of Life Science, Hunan University of Science and Technology, He Ping Street, Xiangtan, Hunan 411201, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP060827.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-AUG-2020\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 07:06:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,816\nCDSs (total) :: 6,721\nGenes (coding) :: 6,626\nCDSs (with protein) :: 6,626\nGenes (RNA) :: 95\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 36 of 101\nPseudo Genes (incomplete) :: 71 of 101\nPseudo Genes (internal stop) :: 6 of 101\nPseudo Genes (multiple problems) :: 17 of 101\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
type strain of Streptomyces genisteinicus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024359.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014140772.1
COORDINATES: similar to AA sequence:RefSeq:WP_009712412.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013133203.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954224.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014158430.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645464.1
COORDINATES: similar to AA sequence:RefSeq:WP_003952468.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954259.1
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020135859.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_019329452.1
GO:0008270 - zinc ion binding [Evidence IEA]
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010988911.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF024767.2
COORDINATES: similar to AA sequence:RefSeq:WP_018569222.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014677524.1
COORDINATES: similar to AA sequence:RefSeq:WP_019524916.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006129967.1
GO:0003674 - molecular_function [Evidence IEA]
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: similar to AA sequence:RefSeq:WP_006346024.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_019524919.1
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: similar to AA sequence:RefSeq:WP_019524920.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: similar to AA sequence:RefSeq:WP_019524921.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_018556248.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: similar to AA sequence:RefSeq:WP_006134387.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: similar to AA sequence:RefSeq:WP_019329412.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523893.1
COORDINATES: similar to AA sequence:RefSeq:WP_004921061.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014043529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377468.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015663139.1
COORDINATES: similar to AA sequence:RefSeq:WP_020135010.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010639989.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377500.1
COORDINATES: similar to AA sequence:RefSeq:WP_019546049.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004921040.1
COORDINATES: similar to AA sequence:RefSeq:WP_018842418.1
COORDINATES: similar to AA sequence:RefSeq:WP_009716301.1
COORDINATES: similar to AA sequence:RefSeq:WP_017241801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015575524.1
COORDINATES: similar to AA sequence:RefSeq:WP_020135011.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998693.1
COORDINATES: similar to AA sequence:RefSeq:WP_018520798.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019526308.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007455982.1
COORDINATES: protein motif:HMM:NF039695.1