Borrelia maritima strain CA690 plasmid cp32-2, complete sequence.
type: Entry
definition: Borrelia maritima strain CA690 plasmid cp32-2, complete sequence.
sequence version: NZ_CP044542.1
sequence date: 2022-11-27
sequence: sequence
division: CON
label: NZ_CP044542.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08925038
keyword: RefSeq
source: Borrelia maritima
organism: Borrelia maritima
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
references: 31793856
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044542.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-MAY-2018\nAssembly Method :: SPAdes v. 3.9\nAssembly Name :: CA690\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:40:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,083\nCDSs (total) :: 1,043\nGenes (coding) :: 997\nCDSs (with protein) :: 997\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 32 of 46\nPseudo Genes (incomplete) :: 13 of 46\nPseudo Genes (internal stop) :: 27 of 46\nPseudo Genes (multiple problems) :: 21 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16877
topology: circular
so has quality: SO_0000988
location: 1..16877
location: region:1-16877:1
RO_0002162: 2761123

NZ_CP044542
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08925038
type: BioSample
SIO_000068: biosample

1
title: Borrelia maritima sp. nov., a novel species of the Borrelia burgdorferi sensu lato complex, occupying a basal position to North American species
author: Margos, G.
author: Fedorova, N.
author: Becker, N.S.
author: Kleinjan, J.E.
author: Marosevic, D.
author: Krebs, S.
author: Hui, L.
author: Fingerle, V.
author: Lane, R.S.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 2
pages: 849-856
year: 2020
pubmed: 31793856

31793856
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Margos, G.
author: Fingerle, V.
author: Lane, R.S.
journal: Submitted (02-OCT-2019) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16877:1
position: 16877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16877:1:source
so part of: sequence
organism: Borrelia maritima
mol type: genomic DNA
strain: CA690
isolation source: Ixodes spinipalpis
culture collection: ATCC:TSD-160
culture collection: DSM:107169
type material: type material of Borrelia maritima
plasmid: cp32-2
country: USA: Alameda County
collection date: 2009
collected by: Department of Environmental Science, University of California
genotype: ST551

2761123
type: Taxonomy
SIO_000068: taxonomy

DB723_RS05215
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05215
old locus tag: DB723_05215
so part of: sequence
location: join(16669..16877,1..13)
location: region:1-16877:1
so has part: feature:16669-16877:1:exon
so has part: feature:1-13:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:16669-16877:1:exon

position:16669:1
position: 16669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-13:1:exon

position:13:1
position: 13
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DB723_RS05215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05215
old locus tag: DB723_05215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKRLYVIFAVFALIISCKNYASSEDLKQNFKKQVKGFLDTKKEELVGGLTNLTLEVCSKGQSEEQVVQGTKF
SIO_010081: DB723_RS05215
subclass of: SO_0000673
so part of: DB723_RS05215
location: join(16669..16877,1..13)
location: region:1-16877:1
so has part: feature:16669-16877:1:exon
so has part: feature:1-13:1:exon

WP_151553219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16669-16877:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-13:1:exon

DB723_RS05220
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05220
old locus tag: DB723_05220
so part of: sequence
location: 33..620
location: region:33-620:1
so has part: feature:33-620:1:exon
subclass of: SO_0000010

position:33:1
position: 33
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:620:1
position: 620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33-620:1:exon

DB723_RS05220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05220
old locus tag: DB723_05220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ErpL protein
translation: MDTKKEELVGGLTNLTLEVCSKGQSEEQVVQGVAEDSKLKEIEKQIKELKEKIEKSDGKTSLKTYADYEKKVKGLAEKLDKLKIKEEEIKNGLKGLKENLKKKKDEREKALEEAKDKLKNFKNQVGSAGGQTYGHQVQNRGGIGLQAWNCVNKLGLNGNYSRDTSNSDQLANKVIEDALTKIEEELREIVEKNKE
SIO_010081: DB723_RS05220
subclass of: SO_0000673
so part of: DB723_RS05220
location: 33..620
location: region:33-620:1
so has part: feature:33-620:1:exon

WP_151553201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33-620:1:exon

DB723_RS05225
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05225
old locus tag: DB723_05225
so part of: sequence
location: complement(811..1101)
location: region:811-1101:-1
so has part: feature:811-1101:-1:exon
subclass of: SO_0000010

position:811:-1
position: 811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1101:-1
position: 1101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:811-1101:-1:exon

DB723_RS05225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05225
old locus tag: DB723_05225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NINE protein
translation: MSKAFDEIYCHSCSKAIKKDAEIYIAYGVKNKHAQESYNKTTIFLLCLLLRFLGAYRFYVSKTRTGLLYLFTGGILLVGVLLDIINISKNTFQKGI
SIO_010081: DB723_RS05225
subclass of: SO_0000673
so part of: DB723_RS05225
location: complement(811..1101)
location: region:811-1101:-1
so has part: feature:811-1101:-1:exon

WP_151553221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:811-1101:-1:exon

DB723_RS05230
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05230
old locus tag: DB723_05230
pseudo: true
so part of: sequence
location: 1314..1880
location: region:1314-1880:1
so has part: feature:1314-1880:1:exon
subclass of: SO_0000010

position:1314:1
position: 1314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1880:1
position: 1880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1314-1880:1:exon

DB723_RS05230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05230
old locus tag: DB723_05230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486169.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF603 domain-containing protein
SIO_010081: DB723_RS05230
subclass of: SO_0000673
so part of: DB723_RS05230
location: 1314..1880
location: region:1314-1880:1
so has part: feature:1314-1880:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1314-1880:1:exon

DB723_RS05235
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05235
old locus tag: DB723_05235
pseudo: true
so part of: sequence
location: 1897..>2981
location: region:1897-2981:1
so has part: feature:1897-2981:1:exon
subclass of: SO_0000010

position:1897:1
position: 1897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2981:1
position: 2981
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1897-2981:1:exon

DB723_RS05235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05235
old locus tag: DB723_05235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PBSX family phage terminase large subunit
SIO_010081: DB723_RS05235
subclass of: SO_0000673
so part of: DB723_RS05235
location: 1897..>2981
location: region:1897-2981:1
so has part: feature:1897-2981:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1897-2981:1:exon

DB723_RS05385
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05385
so part of: sequence
location: 3105..3401
location: region:3105-3401:1
so has part: feature:3105-3401:1:exon
subclass of: SO_0000010

position:3105:1
position: 3105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3401:1
position: 3401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3105-3401:1:exon

DB723_RS05385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05385
inference: COORDINATES: protein motif:HMM:NF018125.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1073 domain-containing protein
translation: MFACIISYRFHGIEYVLVKTKNRLLDLEAPCNIELPIGFEYLDCESVRDLGIDFVYITYRVKTNNKGNSYDTIKIHKGRLIIYENFDFILKRHVPCYT
SIO_010081: DB723_RS05385
subclass of: SO_0000673
so part of: DB723_RS05385
location: 3105..3401
location: region:3105-3401:1
so has part: feature:3105-3401:1:exon

WP_228459438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3105-3401:1:exon

DB723_RS05390
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05390
pseudo: true
so part of: sequence
location: 3715..4441
location: region:3715-4441:1
so has part: feature:3715-4441:1:exon
subclass of: SO_0000010

position:3715:1
position: 3715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4441:1
position: 4441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3715-4441:1:exon

DB723_RS05390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486240.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF693 family protein
SIO_010081: DB723_RS05390
subclass of: SO_0000673
so part of: DB723_RS05390
location: 3715..4441
location: region:3715-4441:1
so has part: feature:3715-4441:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3715-4441:1:exon

DB723_RS05255
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05255
old locus tag: DB723_05255
pseudo: true
so part of: sequence
location: 4453..4982
location: region:4453-4982:1
so has part: feature:4453-4982:1:exon
subclass of: SO_0000010

position:4453:1
position: 4453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4982:1
position: 4982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4453-4982:1:exon

DB723_RS05255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05255
old locus tag: DB723_05255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010261318.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF777 family protein
SIO_010081: DB723_RS05255
subclass of: SO_0000673
so part of: DB723_RS05255
location: 4453..4982
location: region:4453-4982:1
so has part: feature:4453-4982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4453-4982:1:exon

DB723_RS05615
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05615
so part of: sequence
location: 5167..5310
location: region:5167-5310:1
so has part: feature:5167-5310:1:exon
subclass of: SO_0000010

position:5167:1
position: 5167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5310:1
position: 5310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5167-5310:1:exon

DB723_RS05615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLLKLLKINNLQAVKNYFHEISKKPNLDLSAYILFFSGDVLNMELDL
SIO_010081: DB723_RS05615
subclass of: SO_0000673
so part of: DB723_RS05615
location: 5167..5310
location: region:5167-5310:1
so has part: feature:5167-5310:1:exon

WP_228459439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5167-5310:1:exon

DB723_RS05775
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05775
pseudo: true
so part of: sequence
location: 5307..5663
location: region:5307-5663:1
so has part: feature:5307-5663:1:exon
subclass of: SO_0000010

position:5307:1
position: 5307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5663:1
position: 5663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5307-5663:1:exon

DB723_RS05775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05775
inference: COORDINATES: protein motif:HMM:NF015399.2
note: DUF276 is restricted to Borreliella and related spirochetes.; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF276 domain-containing protein
SIO_010081: DB723_RS05775
subclass of: SO_0000673
so part of: DB723_RS05775
location: 5307..5663
location: region:5307-5663:1
so has part: feature:5307-5663:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5307-5663:1:exon

DB723_RS05630
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05630
so part of: sequence
location: 5819..5971
location: region:5819-5971:1
so has part: feature:5819-5971:1:exon
subclass of: SO_0000010

position:5819:1
position: 5819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5971:1
position: 5971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5819-5971:1:exon

DB723_RS05630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05630
inference: COORDINATES: protein motif:HMM:NF015399.2
note: DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF276 domain-containing protein
translation: MKVKYKLDLKNYLYLNIDSQIRNIYSRIISNNYSDMGISFEYQDFFSLLL
SIO_010081: DB723_RS05630
subclass of: SO_0000673
so part of: DB723_RS05630
location: 5819..5971
location: region:5819-5971:1
so has part: feature:5819-5971:1:exon

WP_228459441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5819-5971:1:exon

DB723_RS05270
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05270
old locus tag: DB723_05270
pseudo: true
so part of: sequence
location: 6216..6743
location: region:6216-6743:1
so has part: feature:6216-6743:1:exon
subclass of: SO_0000010

position:6216:1
position: 6216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6743:1
position: 6743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6216-6743:1:exon

DB723_RS05270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05270
old locus tag: DB723_05270
inference: COORDINATES: protein motif:HMM:NF017093.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF735 family protein
SIO_010081: DB723_RS05270
subclass of: SO_0000673
so part of: DB723_RS05270
location: 6216..6743
location: region:6216-6743:1
so has part: feature:6216-6743:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6216-6743:1:exon

DB723_RS05275
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05275
old locus tag: DB723_05275
pseudo: true
so part of: sequence
location: 6752..7513
location: region:6752-7513:1
so has part: feature:6752-7513:1:exon
subclass of: SO_0000010

position:6752:1
position: 6752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7513:1
position: 7513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6752-7513:1:exon

DB723_RS05275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05275
old locus tag: DB723_05275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012621168.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF685 domain-containing protein
SIO_010081: DB723_RS05275
subclass of: SO_0000673
so part of: DB723_RS05275
location: 6752..7513
location: region:6752-7513:1
so has part: feature:6752-7513:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6752-7513:1:exon

DB723_RS05280
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05280
old locus tag: DB723_05280
pseudo: true
so part of: sequence
location: 7636..7813
location: region:7636-7813:1
so has part: feature:7636-7813:1:exon
subclass of: SO_0000010

position:7636:1
position: 7636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7813:1
position: 7813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7636-7813:1:exon

DB723_RS05280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05280
old locus tag: DB723_05280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002658582.1
GO function: GO:0140911 - pore-forming activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: BlyA family holin
SIO_010081: DB723_RS05280
subclass of: SO_0000673
so part of: DB723_RS05280
location: 7636..7813
location: region:7636-7813:1
so has part: feature:7636-7813:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7636-7813:1:exon

DB723_RS05285
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05285
old locus tag: DB723_05285
pseudo: true
so part of: sequence
location: 7817..8171
location: region:7817-8171:1
so has part: feature:7817-8171:1:exon
subclass of: SO_0000010

position:7817:1
position: 7817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8171:1
position: 8171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7817-8171:1:exon

DB723_RS05285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05285
old locus tag: DB723_05285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: biotin--acetyl-CoA-carboxylase ligase
SIO_010081: DB723_RS05285
subclass of: SO_0000673
so part of: DB723_RS05285
location: 7817..8171
location: region:7817-8171:1
so has part: feature:7817-8171:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7817-8171:1:exon

DB723_RS05290
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05290
old locus tag: DB723_05290
pseudo: true
so part of: sequence
location: 8161..8498
location: region:8161-8498:1
so has part: feature:8161-8498:1:exon
subclass of: SO_0000010

position:8161:1
position: 8161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8498:1
position: 8498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8161-8498:1:exon

DB723_RS05290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05290
old locus tag: DB723_05290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486154.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: DB723_RS05290
subclass of: SO_0000673
so part of: DB723_RS05290
location: 8161..8498
location: region:8161-8498:1
so has part: feature:8161-8498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8161-8498:1:exon

DB723_RS05295
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05295
old locus tag: DB723_05295
pseudo: true
so part of: sequence
location: 8491..8843
location: region:8491-8843:1
so has part: feature:8491-8843:1:exon
subclass of: SO_0000010

position:8491:1
position: 8491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8843:1
position: 8843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8491-8843:1:exon

DB723_RS05295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05295
old locus tag: DB723_05295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259076.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: DB723_RS05295
subclass of: SO_0000673
so part of: DB723_RS05295
location: 8491..8843
location: region:8491-8843:1
so has part: feature:8491-8843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8491-8843:1:exon

DB723_RS05300
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
gene: revA
locus tag: DB723_RS05300
old locus tag: DB723_05300
so part of: sequence
location: complement(8983..9459)
location: region:8983-9459:-1
so has part: feature:8983-9459:-1:exon
subclass of: SO_0000010

position:8983:-1
position: 8983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9459:-1
position: 9459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8983-9459:-1:exon

DB723_RS05300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
gene: revA
locus tag: DB723_RS05300
old locus tag: DB723_05300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883730.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: fibronectin-binding protein RevA
translation: MKNKNIVKLFFVSMLFVMACKAYVEEKKQIDSLIADVSTLKNDSAGDTFRDYKDKINKLKESLKDVSNTELKEKLLKLQSSFQDKLAAKLAALKAAKQTIENLSNKDNEKTRIWKEAKLVGVTISYKGSHIRGHGDKMSEEAVSQIDKIIGFLGADTN
SIO_010081: DB723_RS05300
subclass of: SO_0000673
so part of: DB723_RS05300
location: complement(8983..9459)
location: region:8983-9459:-1
so has part: feature:8983-9459:-1:exon

WP_151553203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8983-9459:-1:exon

DB723_RS05305
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05305
old locus tag: DB723_05305
so part of: sequence
location: 9631..10053
location: region:9631-10053:1
so has part: feature:9631-10053:1:exon
subclass of: SO_0000010

position:9631:1
position: 9631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10053:1
position: 10053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9631-10053:1:exon

DB723_RS05305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05305
old locus tag: DB723_05305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015056670.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MKIINILFCLFLLILNSCTANDPHTQETKSRGKRDLSQKEAPQEKSKSKEELLKEKLSDDQKTQLDWLKIVLTDAGEFGKFLENNEDKIKSALDHIKTELNKCTGNDEGKNIFKAVVKEFFTGEEDIDKFKDQVISACGG
SIO_010081: DB723_RS05305
subclass of: SO_0000673
so part of: DB723_RS05305
location: 9631..10053
location: region:9631-10053:1
so has part: feature:9631-10053:1:exon

WP_151553205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9631-10053:1:exon

DB723_RS05310
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05310
old locus tag: DB723_05310
so part of: sequence
location: 10075..10698
location: region:10075-10698:1
so has part: feature:10075-10698:1:exon
subclass of: SO_0000010

position:10075:1
position: 10075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10698:1
position: 10698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10075-10698:1:exon

DB723_RS05310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05310
old locus tag: DB723_05310
inference: COORDINATES: protein motif:HMM:NF015275.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MKIINILFCLSLLILNSCNTNDNDTLNNNTTQQVKSRKKRDLSQQEESLQEKITLTPEEEKMFTSLKALFTYTVEKLYDHMQECSNGNKNKCKDKCNNFFNWLSKDSKKQKELAKAFTKVFNFLESKRKSKANNEDFDTYIKGAIDKNSGNNNKYGNGSDNEIRQYFKGVADITFSHTNSNDEIYKCLKEELLKENSHYASLTSWKQ
SIO_010081: DB723_RS05310
subclass of: SO_0000673
so part of: DB723_RS05310
location: 10075..10698
location: region:10075-10698:1
so has part: feature:10075-10698:1:exon

WP_151553207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10075-10698:1:exon

DB723_RS05315
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05315
old locus tag: DB723_05315
pseudo: true
so part of: sequence
location: complement(10818..11725)
location: region:10818-11725:-1
so has part: feature:10818-11725:-1:exon
subclass of: SO_0000010

position:10818:-1
position: 10818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11725:-1
position: 11725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10818-11725:-1:exon

DB723_RS05315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05315
old locus tag: DB723_05315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258286.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ERF family protein
SIO_010081: DB723_RS05315
subclass of: SO_0000673
so part of: DB723_RS05315
location: complement(10818..11725)
location: region:10818-11725:-1
so has part: feature:10818-11725:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10818-11725:-1:exon

DB723_RS05320
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05320
old locus tag: DB723_05320
so part of: sequence
location: 12260..13372
location: region:12260-13372:1
so has part: feature:12260-13372:1:exon
subclass of: SO_0000010

position:12260:1
position: 12260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13372:1
position: 13372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12260-13372:1:exon

DB723_RS05320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05320
old locus tag: DB723_05320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258844.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLSKKNTKSPTCHNKLQHKLIVLISTLKYINKKHKKYTQKNILYYFNENLKRNGQPTVKLKTMQNYLYKLEKDIKVTTNYHKHLGVNLGTEIYYQLNYSKKECYQKINKYFQEKKLSRFQKRAERGIKDKLNKNGNVDFKECFNNNNNNIKKEEKSDPKIEKYKLKNYYNKCNFKSKATLSILNLDINEDTMFKVFKIVKRAELDLIKDKNIYSNKSCFKEKQNKLKEILMNIQKELEKNGYKTEQLKTNFQKIYENYKYKPHFIIENHKYNDLNNIKRKLKKSIEIKKEYSQQNCQNLKINIFNILIEQLKKEEKIKVIKPIIKKYLNNKKIIEYNKVFGTYYSELLELIKNQKNSLTKEEFNKKAV
SIO_010081: DB723_RS05320
subclass of: SO_0000673
so part of: DB723_RS05320
location: 12260..13372
location: region:12260-13372:1
so has part: feature:12260-13372:1:exon

WP_151553209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12260-13372:1:exon

DB723_RS05325
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05325
old locus tag: DB723_05325
so part of: sequence
location: 13382..13939
location: region:13382-13939:1
so has part: feature:13382-13939:1:exon
subclass of: SO_0000010

position:13382:1
position: 13382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13939:1
position: 13939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13382-13939:1:exon

DB723_RS05325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05325
old locus tag: DB723_05325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MENVIDSMEKGKCKVECQNKERFIKIEKENGKAMYHTKIMMDIYKFGVYEKKHEFRLSLRALFNGERIVEETHLYPIKEGDKFIGIFYGYRKSIKKPLIKYQLNGTRKAYALARAYYMEFRFKAGSVFCYFKGLYRLLDKKRTDNHYNKVLFSMFTDLEQQVYKFYGKKYPEQGPLIKWILKNLK
SIO_010081: DB723_RS05325
subclass of: SO_0000673
so part of: DB723_RS05325
location: 13382..13939
location: region:13382-13939:1
so has part: feature:13382-13939:1:exon

WP_151553211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13382-13939:1:exon

DB723_RS05330
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05330
old locus tag: DB723_05330
so part of: sequence
location: 13915..14682
location: region:13915-14682:1
so has part: feature:13915-14682:1:exon
subclass of: SO_0000010

position:13915:1
position: 13915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14682:1
position: 14682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13915-14682:1:exon

DB723_RS05330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05330
old locus tag: DB723_05330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDTKKPKIITIASIKGGVGKSTSSIIFATLLAQEYKVLLIDIDTQASTTSYFYKEITNQKINVVSKNIYRVLKEKLDINNAIVNVKHNLDLIPSYLSLHKFSSEFIPLKELRLKDNLFFLKQNYDYIIMDTNPSLDFTLSNALMTSNCIIVPMTAEKWAIESLELLEFYIKNLKIKIPIFLLITRFKKNNTHKELLKHVKSKKGFLGIVHEREDLNKKITSNDEFDMTKDYIDEYKEALSKFFDMHGKYIIKNCP
SIO_010081: DB723_RS05330
subclass of: SO_0000673
so part of: DB723_RS05330
location: 13915..14682
location: region:13915-14682:1
so has part: feature:13915-14682:1:exon

WP_151553213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13915-14682:1:exon

DB723_RS05335
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05335
old locus tag: DB723_05335
so part of: sequence
location: 14715..15275
location: region:14715-15275:1
so has part: feature:14715-15275:1:exon
subclass of: SO_0000010

position:14715:1
position: 14715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15275:1
position: 15275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14715-15275:1:exon

DB723_RS05335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05335
old locus tag: DB723_05335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017633.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKIELNKRVLSEKIDPDVEKKIVTNEDAIIHYNFLKDRLKANFRKEIFHKVDNIRILKEIKDNEYYKLDGYKSFNAFIKDYNIARSQAYNYLKLAAALQKGILKEDYVIENGIHNSLNLIHGKESSTFKRSKKNPIKPLRFQLKTKESYDFYKNNANFTSFMMHEIFENQKDLINKLLKKYKQLKG
SIO_010081: DB723_RS05335
subclass of: SO_0000673
so part of: DB723_RS05335
location: 14715..15275
location: region:14715-15275:1
so has part: feature:14715-15275:1:exon

WP_151553215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14715-15275:1:exon

DB723_RS05340
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
gene: bdr
locus tag: DB723_RS05340
old locus tag: DB723_05340
so part of: sequence
location: 15279..15614
location: region:15279-15614:1
so has part: feature:15279-15614:1:exon
subclass of: SO_0000010

position:15279:1
position: 15279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15614:1
position: 15614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15279-15614:1:exon

DB723_RS05340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
gene: bdr
locus tag: DB723_RS05340
old locus tag: DB723_05340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540904.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MSNLAYRTYNIESIKNEFLNIGFSEDTIDFVLLHNNNYNFEFLEEKMIYVEKNLNARIDNVEKSLNEKLSMGNSLIYFMILTTAMLGPILNTLFMKYLQGGKYFITYNVLF
SIO_010081: DB723_RS05340
subclass of: SO_0000673
so part of: DB723_RS05340
location: 15279..15614
location: region:15279-15614:1
so has part: feature:15279-15614:1:exon

WP_151553217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15279-15614:1:exon

DB723_RS05345
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05345
old locus tag: DB723_05345
pseudo: true
so part of: sequence
location: complement(15877..16241)
location: region:15877-16241:-1
so has part: feature:15877-16241:-1:exon
subclass of: SO_0000010

position:15877:-1
position: 15877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16241:-1
position: 16241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15877-16241:-1:exon

DB723_RS05345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05345
old locus tag: DB723_05345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486141.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: DB723_RS05345
subclass of: SO_0000673
so part of: DB723_RS05345
location: complement(15877..16241)
location: region:15877-16241:-1
so has part: feature:15877-16241:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15877-16241:-1:exon