Borrelia maritima strain CA690 plasmid lp17, complete sequence.
type: Entry
definition: Borrelia maritima strain CA690 plasmid lp17, complete sequence.
sequence version: NZ_CP044540.1
sequence date: 2022-11-27
sequence: sequence
division: CON
label: NZ_CP044540.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08925038
keyword: RefSeq
source: Borrelia maritima
organism: Borrelia maritima
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
references: 31793856
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044540.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-MAY-2018\nAssembly Method :: SPAdes v. 3.9\nAssembly Name :: CA690\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:40:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,083\nCDSs (total) :: 1,043\nGenes (coding) :: 997\nCDSs (with protein) :: 997\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 32 of 46\nPseudo Genes (incomplete) :: 13 of 46\nPseudo Genes (internal stop) :: 27 of 46\nPseudo Genes (multiple problems) :: 21 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18529
topology: linear
so has quality: SO_0000987
location: 1..18529
location: region:1-18529:1
RO_0002162: 2761123

NZ_CP044540
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08925038
type: BioSample
SIO_000068: biosample

1
title: Borrelia maritima sp. nov., a novel species of the Borrelia burgdorferi sensu lato complex, occupying a basal position to North American species
author: Margos, G.
author: Fedorova, N.
author: Becker, N.S.
author: Kleinjan, J.E.
author: Marosevic, D.
author: Krebs, S.
author: Hui, L.
author: Fingerle, V.
author: Lane, R.S.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 2
pages: 849-856
year: 2020
pubmed: 31793856

31793856
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Margos, G.
author: Fingerle, V.
author: Lane, R.S.
journal: Submitted (02-OCT-2019) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:18529:1
position: 18529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18529:1:source
so part of: sequence
organism: Borrelia maritima
mol type: genomic DNA
strain: CA690
isolation source: Ixodes spinipalpis
culture collection: ATCC:TSD-160
culture collection: DSM:107169
type material: type material of Borrelia maritima
plasmid: lp17
country: USA: Alameda County
collection date: 2009
collected by: Department of Environmental Science, University of California
genotype: ST551

2761123
type: Taxonomy
SIO_000068: taxonomy

DB723_RS05375
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05375
so part of: sequence
location: <1..528
location: region:1-528:1
so has part: feature:1-528:1:exon
subclass of: SO_0000010

position:528:1
position: 528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-528:1:exon

DB723_RS05375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNNNIKNNTTYIKLIRLEKQGKIIPYKPSQNIKAFKKYGKKSINLYPKEQILKYFITPSSLKSYNTNTYFPKYNLSELVKNAITFEEFAIKIYKNPIILPSKSYYFKILKKTNPNYVLDLDQYGLFKTLNKDYIENILTIFNSKPREKRISIKGDKLNKKDKTKKFFAWKLFKK
SIO_010081: DB723_RS05375
subclass of: SO_0000673
so part of: DB723_RS05375
location: <1..528
location: region:1-528:1
so has part: feature:1-528:1:exon

WP_188093277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-528:1:exon

DB723_RS05070
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05070
old locus tag: DB723_05070
so part of: sequence
location: complement(1477..1749)
location: region:1477-1749:-1
so has part: feature:1477-1749:-1:exon
subclass of: SO_0000010

position:1477:-1
position: 1477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1749:-1
position: 1749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1477-1749:-1:exon

DB723_RS05070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05070
old locus tag: DB723_05070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPISKEVDLEEIIKQNVSKSKFAFNSDNDAVANNISNVKLGRSKMTIKQISVGLKDEYWVKFYSILDKKGLTASGFIRTLIMEYIETYKK
SIO_010081: DB723_RS05070
subclass of: SO_0000673
so part of: DB723_RS05070
location: complement(1477..1749)
location: region:1477-1749:-1
so has part: feature:1477-1749:-1:exon

WP_151553158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1477-1749:-1:exon

DB723_RS05075
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05075
old locus tag: DB723_05075
so part of: sequence
location: complement(1740..2480)
location: region:1740-2480:-1
so has part: feature:1740-2480:-1:exon
subclass of: SO_0000010

position:1740:-1
position: 1740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2480:-1
position: 2480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1740-2480:-1:exon

DB723_RS05075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05075
old locus tag: DB723_05075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540544.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAFHIQKGGVGKTTLSGNIASYLSKTKKVILVDCDIQQGSSSTWFLNHEILRLDIKDSLLKKADIYQVLKQIQKNFYILPCVPSGTFRRDVQHKLQDFPYLIDDFCLELEKLGFELAIFDLSPSFELWERRIILAMSEVVTPLTPEFLSLEGINIFKEEFDFLLKSYRKKVKHEKIICNMLNKNFKRHNLHLKQFKTFGYDLYEVGQDAKIAESQLYKKSIFDYYPESKSILELSRLGDALCL
SIO_010081: DB723_RS05075
subclass of: SO_0000673
so part of: DB723_RS05075
location: complement(1740..2480)
location: region:1740-2480:-1
so has part: feature:1740-2480:-1:exon

WP_151553160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1740-2480:-1:exon

DB723_RS05085
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05085
old locus tag: DB723_05085
so part of: sequence
location: 3500..4159
location: region:3500-4159:1
so has part: feature:3500-4159:1:exon
subclass of: SO_0000010

position:3500:1
position: 3500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4159:1
position: 4159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3500-4159:1:exon

DB723_RS05085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05085
old locus tag: DB723_05085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKEITKNYNEYIIRGIKGTFFGDSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSNPNFSSTNVTMNCINTFKLIVDIVNMQTGENYDYDTFITKTETEKMLKYGTKIIAALARHFDEQNKTNFNESYYEWEKGWIDKKWINYEPTEAEIKEIQTMNQKLNPLKPKHARTPLNKGQIKLLKAINKIESQSKQHTKTNNTIKKLKGNHRKEAEI
SIO_010081: DB723_RS05085
subclass of: SO_0000673
so part of: DB723_RS05085
location: 3500..4159
location: region:3500-4159:1
so has part: feature:3500-4159:1:exon

WP_151553162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3500-4159:1:exon

DB723_RS05100
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05100
old locus tag: DB723_05100
so part of: sequence
location: 6376..7059
location: region:6376-7059:1
so has part: feature:6376-7059:1:exon
subclass of: SO_0000010

position:6376:1
position: 6376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7059:1
position: 7059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6376-7059:1:exon

DB723_RS05100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05100
old locus tag: DB723_05100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSKVFIFLIFLIQNLAIHAQNTNYEFKQAKIKNLKGIFINYKVYLTENLAIDNVKNLSHISTFKINLVIDKKIAASIKNEQDVIRAGNECGIFLEFQINNRIYYTKFSSIKYILKAIESFTKIKNTINNSEIKNLEGNGIFLYKNGLSYDLKTEFQEAAIFVNFLGFKDNTGRPYFIFYYDNIDNKDKNLKTILISFEEFHNGIREGLFLLRNEKAILEFIKFSKD
SIO_010081: DB723_RS05100
subclass of: SO_0000673
so part of: DB723_RS05100
location: 6376..7059
location: region:6376-7059:1
so has part: feature:6376-7059:1:exon

WP_151553164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6376-7059:1:exon

DB723_RS05105
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05105
old locus tag: DB723_05105
so part of: sequence
location: complement(7197..7775)
location: region:7197-7775:-1
so has part: feature:7197-7775:-1:exon
subclass of: SO_0000010

position:7197:-1
position: 7197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7775:-1
position: 7775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7197-7775:-1:exon

DB723_RS05105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05105
old locus tag: DB723_05105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSKFITKYFILVFFLISCQTYQIAYDRFSQVLDSQYDVGVNYSRDGIFKSVISVKYDKLKNKREYFILVRVESRNSSKIKLEKIITDTRFEAKGELVLEDSKRVVYYDEFYDPYSFYDYTTVVTEKNIKVEIYKFSISESEFIKFVALGNDNIASFRIYAFRNDVVVSFNKIPFKKFLDEFNLKVKELSDS
SIO_010081: DB723_RS05105
subclass of: SO_0000673
so part of: DB723_RS05105
location: complement(7197..7775)
location: region:7197-7775:-1
so has part: feature:7197-7775:-1:exon

WP_151553166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7197-7775:-1:exon

DB723_RS05110
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05110
old locus tag: DB723_05110
so part of: sequence
location: 8003..8950
location: region:8003-8950:1
so has part: feature:8003-8950:1:exon
subclass of: SO_0000010

position:8003:1
position: 8003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8950:1
position: 8950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8950:1:exon

DB723_RS05110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05110
old locus tag: DB723_05110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYTDPRSIINTYFVKNKKIFIINPIGFKLELNFEKNIQPNEKENITLKKFKGGIISLELRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYKIDLKANNKDEIYLIGLKIFGSIYRKENVENAFIPIIKNNNIYLFGNKANNQKVNLLLKGINKTIELPFLTKISYSNIKIMNKADFKTSENLNIKTTNRLLLNLSTKIYEELILTNSNQIKTINNKQKILKTLRSFIENENGLGGKIKLIFLERTNFLTKNLNSNSLDFILNDINIIQENSCIKIDITLLEDEIEKKYLTQISSIAPFLKNITLL
SIO_010081: DB723_RS05110
subclass of: SO_0000673
so part of: DB723_RS05110
location: 8003..8950
location: region:8003-8950:1
so has part: feature:8003-8950:1:exon

WP_151553168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8950:1:exon

DB723_RS05115
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05115
old locus tag: DB723_05115
so part of: sequence
location: 9096..9422
location: region:9096-9422:1
so has part: feature:9096-9422:1:exon
subclass of: SO_0000010

position:9096:1
position: 9096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9422:1
position: 9422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9096-9422:1:exon

DB723_RS05115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05115
old locus tag: DB723_05115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257662.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCTIHVDKRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLRIEQAKKIMNRKSTKHEIQIVPKHMGHIL
SIO_010081: DB723_RS05115
subclass of: SO_0000673
so part of: DB723_RS05115
location: 9096..9422
location: region:9096-9422:1
so has part: feature:9096-9422:1:exon

WP_151553170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9096-9422:1:exon

DB723_RS05120
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05120
old locus tag: DB723_05120
so part of: sequence
location: 9579..10685
location: region:9579-10685:1
so has part: feature:9579-10685:1:exon
subclass of: SO_0000010

position:9579:1
position: 9579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10685:1
position: 10685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9579-10685:1:exon

DB723_RS05120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05120
old locus tag: DB723_05120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MIIKILNNVNTNFNNLITLEEIKKYVPKNTNSNLIELKQSRLKSYLTKKKAIYQRILKVCWAIELKNKEYYKSNKLKTYSTIEIYNIVNKCLAKDNKKISIRTLEYDMSFLNQILLITTKLKHLGKNNGSFAFYIQNKKLWKHRFTIIQEAINEEIKEYLKDKKIVSDFSKEIDNDINKSNIKNLKSKSSITDESIADVIPKGIKDIYKIKNSIVKNNVKAKEISYKEYITNKMLNVHKIKKLQITKILKISNNEKTYINALRNLKLAIEKYKKEYDIEDISNHFIKEFKNKYSRKIWMMNGKTNKINDFNEIWEKRFKKSFSNEILKEKCQSDYIKRKTNISNHNKRINIFFSNHKGLKKINKIKIN
SIO_010081: DB723_RS05120
subclass of: SO_0000673
so part of: DB723_RS05120
location: 9579..10685
location: region:9579-10685:1
so has part: feature:9579-10685:1:exon

WP_151553172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9579-10685:1:exon

DB723_RS05125
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05125
old locus tag: DB723_05125
so part of: sequence
location: complement(10860..11153)
location: region:10860-11153:-1
so has part: feature:10860-11153:-1:exon
subclass of: SO_0000010

position:10860:-1
position: 10860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11153:-1
position: 11153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10860-11153:-1:exon

DB723_RS05125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05125
old locus tag: DB723_05125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5425 family lipoprotein
translation: MNKKFTISLVSITLTFLLVLGCDLSSGASRNRIDGISDFKKKYIDDSNYKCLGKKESESENSQVKLDENNNNNRSYYSRVSNVSNYYDKTHVSCKRQ
SIO_010081: DB723_RS05125
subclass of: SO_0000673
so part of: DB723_RS05125
location: complement(10860..11153)
location: region:10860-11153:-1
so has part: feature:10860-11153:-1:exon

WP_151553174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10860-11153:-1:exon

DB723_RS05130
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05130
old locus tag: DB723_05130
so part of: sequence
location: complement(13236..14039)
location: region:13236-14039:-1
so has part: feature:13236-14039:-1:exon
subclass of: SO_0000010

position:13236:-1
position: 13236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14039:-1
position: 14039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13236-14039:-1:exon

DB723_RS05130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05130
old locus tag: DB723_05130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYNIIAGLFIFLFLACNPDFNTNQKDMRYQSSKKGLKSNKKKLKPNSETTPNQEAPSNQKEDDVKKTKNTLIDDLRNLIEKAHSDNEKYKKKVDTVETQYGMLEAFKILIWDYSSSEKLCENTERSRRYRRRIYSILNTINDNELKNFSEIIEKSGHLQGIFNDLSTFGEIFDHTIDFLYPKKDTLEKLEIPNLEKLKNLFEQLLSTKTTVSEMMYKLLLDYQNDENDIKKDINKLKSHISELYNQTSKKRIEAKKLENDIYSMYQ
SIO_010081: DB723_RS05130
subclass of: SO_0000673
so part of: DB723_RS05130
location: complement(13236..14039)
location: region:13236-14039:-1
so has part: feature:13236-14039:-1:exon

WP_151553176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13236-14039:-1:exon

DB723_RS05135
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05135
old locus tag: DB723_05135
so part of: sequence
location: complement(15209..16015)
location: region:15209-16015:-1
so has part: feature:15209-16015:-1:exon
subclass of: SO_0000010

position:15209:-1
position: 15209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16015:-1
position: 16015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15209-16015:-1:exon

DB723_RS05135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05135
old locus tag: DB723_05135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYNIITGLFVFLFLACNLDSNDNQKDMRYQSSKKGLKSNKKGFKSNQETPSNQKEGHNKKTKNTMLNDLLNLIEKAHADKEKYREKLEKEPKEQYGISAFTTLSWADLQGEKISANTERSKKYRKHVYSILNTIDDNELKNFSKIITSVGQIQFTFNTLNALGYTLENMISSLYSKKDSLKEIEISSLEKVKNLFEKLLSTTSIVSKMMRELLLDYQNDVNSIKTDINKLKSHTDKIFYQMAEKSKKTEELKNNIFSIINNLSESMY
SIO_010081: DB723_RS05135
subclass of: SO_0000673
so part of: DB723_RS05135
location: complement(15209..16015)
location: region:15209-16015:-1
so has part: feature:15209-16015:-1:exon

WP_151553178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15209-16015:-1:exon

DB723_RS05595
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05595
pseudo: true
so part of: sequence
location: complement(<17543..>17641)
location: region:17543-17641:-1
so has part: feature:17543-17641:-1:exon
subclass of: SO_0000010

position:17543:-1
position: 17543
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17641:-1
position: 17641
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17543-17641:-1:exon

DB723_RS05595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012579169.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: DB723_RS05595
subclass of: SO_0000673
so part of: DB723_RS05595
location: complement(<17543..>17641)
location: region:17543-17641:-1
so has part: feature:17543-17641:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17543-17641:-1:exon