Borrelia maritima strain CA690 plasmid lp28-2, complete sequence.
type: Entry
definition: Borrelia maritima strain CA690 plasmid lp28-2, complete sequence.
sequence version: NZ_CP044538.1
sequence date: 2022-11-27
sequence: sequence
division: CON
label: NZ_CP044538.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08925038
keyword: RefSeq
source: Borrelia maritima
organism: Borrelia maritima
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
references: 31793856
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044538.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-MAY-2018\nAssembly Method :: SPAdes v. 3.9\nAssembly Name :: CA690\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:40:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,083\nCDSs (total) :: 1,043\nGenes (coding) :: 997\nCDSs (with protein) :: 997\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 32 of 46\nPseudo Genes (incomplete) :: 13 of 46\nPseudo Genes (internal stop) :: 27 of 46\nPseudo Genes (multiple problems) :: 21 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 35049
topology: linear
so has quality: SO_0000987
location: 1..35049
location: region:1-35049:1
RO_0002162: 2761123

NZ_CP044538
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08925038
type: BioSample
SIO_000068: biosample

1
title: Borrelia maritima sp. nov., a novel species of the Borrelia burgdorferi sensu lato complex, occupying a basal position to North American species
author: Margos, G.
author: Fedorova, N.
author: Becker, N.S.
author: Kleinjan, J.E.
author: Marosevic, D.
author: Krebs, S.
author: Hui, L.
author: Fingerle, V.
author: Lane, R.S.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 2
pages: 849-856
year: 2020
pubmed: 31793856

31793856
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Margos, G.
author: Fingerle, V.
author: Lane, R.S.
journal: Submitted (02-OCT-2019) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35049:1
position: 35049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35049:1:source
so part of: sequence
organism: Borrelia maritima
mol type: genomic DNA
strain: CA690
isolation source: Ixodes spinipalpis
culture collection: ATCC:TSD-160
culture collection: DSM:107169
type material: type material of Borrelia maritima
plasmid: lp28-2
country: USA: Alameda County
collection date: 2009
collected by: Department of Environmental Science, University of California
genotype: ST551

2761123
type: Taxonomy
SIO_000068: taxonomy

DB723_RS04745
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04745
old locus tag: DB723_04745
so part of: sequence
location: 190..489
location: region:190-489:1
so has part: feature:190-489:1:exon
subclass of: SO_0000010

position:190:1
position: 190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489:1
position: 489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190-489:1:exon

DB723_RS04745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04745
old locus tag: DB723_04745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLIDDKNQEYFTLKEIQAIQNNNIKNNTTYIKLIRLEKQEKIIPYKPSQNIKAFKKYGKKIINLYPKEQILKYFITPSSLKSCNTNTYFPKYNLSEHKP
SIO_010081: DB723_RS04745
subclass of: SO_0000673
so part of: DB723_RS04745
location: 190..489
location: region:190-489:1
so has part: feature:190-489:1:exon

WP_151553078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:190-489:1:exon

DB723_RS04750
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04750
old locus tag: DB723_04750
so part of: sequence
location: complement(905..1102)
location: region:905-1102:-1
so has part: feature:905-1102:-1:exon
subclass of: SO_0000010

position:905:-1
position: 905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1102:-1
position: 1102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:905-1102:-1:exon

DB723_RS04750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04750
old locus tag: DB723_04750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSNDIDLLNKVMDSQGVINKDIGVINKINSALKCKKVFDGHAFSLFIPHLTFKYVSLGMSAVIP
SIO_010081: DB723_RS04750
subclass of: SO_0000673
so part of: DB723_RS04750
location: complement(905..1102)
location: region:905-1102:-1
so has part: feature:905-1102:-1:exon

WP_151553080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:905-1102:-1:exon

DB723_RS05725
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05725
so part of: sequence
location: complement(1367..1501)
location: region:1367-1501:-1
so has part: feature:1367-1501:-1:exon
subclass of: SO_0000010

position:1367:-1
position: 1367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1501:-1
position: 1501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367-1501:-1:exon

DB723_RS05725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKKVWLALISVNQFLVGGEGEKTNHPDSNCGIKNTILKLSDVR
SIO_010081: DB723_RS05725
subclass of: SO_0000673
so part of: DB723_RS05725
location: complement(1367..1501)
location: region:1367-1501:-1
so has part: feature:1367-1501:-1:exon

WP_267128502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1367-1501:-1:exon

DB723_RS05550
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05550
so part of: sequence
location: 1717..1959
location: region:1717-1959:1
so has part: feature:1717-1959:1:exon
subclass of: SO_0000010

position:1717:1
position: 1717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1959:1
position: 1959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1717-1959:1:exon

DB723_RS05550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05550
inference: COORDINATES: protein motif:HMM:NF037202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFYSNIYQNIFYEQLQIDFYKIIFIDNTEIFEILSKLGTELINSHLLKVIPTLNNKIGKCFSFLDGILKQNPIIKKVFYK
SIO_010081: DB723_RS05550
subclass of: SO_0000673
so part of: DB723_RS05550
location: 1717..1959
location: region:1717-1959:1
so has part: feature:1717-1959:1:exon

WP_267128511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1717-1959:1:exon

DB723_RS05555
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05555
so part of: sequence
location: 2506..2625
location: region:2506-2625:1
so has part: feature:2506-2625:1:exon
subclass of: SO_0000010

position:2506:1
position: 2506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2625:1
position: 2625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2506-2625:1:exon

DB723_RS05555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05555
inference: COORDINATES: protein motif:HMM:NF018920.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTFFLCLTNYRAFKKIGIKEKDVFLDALNFTGCLIKTN
SIO_010081: DB723_RS05555
subclass of: SO_0000673
so part of: DB723_RS05555
location: 2506..2625
location: region:2506-2625:1
so has part: feature:2506-2625:1:exon

WP_228459432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2506-2625:1:exon

DB723_RS04770
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04770
old locus tag: DB723_04770
so part of: sequence
location: 3146..4228
location: region:3146-4228:1
so has part: feature:3146-4228:1:exon
subclass of: SO_0000010

position:3146:1
position: 3146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4228:1
position: 4228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3146-4228:1:exon

DB723_RS04770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04770
old locus tag: DB723_04770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540835.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MQIFSKKTNYRNKLQHKLIVLISTLCYINNKHKKYSQSNILYYFNENLKRNGQTTTTLRTMQNYLYKLEKEIKVTTNYYKHLGVNCGTEIYYKLNYPKKECYLKINQHFKEKKNCRFKSRANNYLKDKFNKNGNVDLVECFNNKNNNTKEEKKINQIETYQIKKYFNKCNFLSKKTLPILNLDINKDELIEILKIIKRIEINLTKNKNIHLNKSYFKEKQNKLKKILINTQQQLEKKGYNAEQLEINIKKIYENYKTKPHFIVEYQKYNDLYKIKRKLEKSIEVKKEISQEDYENIKINIIFNILIEQLRKETKIEVLKPIIKVYLNSKKKLEYNKVFNTYYYELLEITKKEKIFNVKKC
SIO_010081: DB723_RS04770
subclass of: SO_0000673
so part of: DB723_RS04770
location: 3146..4228
location: region:3146-4228:1
so has part: feature:3146-4228:1:exon

WP_151553082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3146-4228:1:exon

DB723_RS04775
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04775
old locus tag: DB723_04775
so part of: sequence
location: 4252..4824
location: region:4252-4824:1
so has part: feature:4252-4824:1:exon
subclass of: SO_0000010

position:4252:1
position: 4252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4824:1
position: 4824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4252-4824:1:exon

DB723_RS04775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04775
old locus tag: DB723_04775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614948.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MQNIAKFIQLDKSIVRCSDKKNLFIKIEKDNDKTMYHTKIMMDIYKFGLNKKKNKCRISLRKLFNQSKVEEFNLFSLRVDDKFLGIYYGYKKPIKKIFVKYEVGGIEKSYLLSKAYYMEFRFKKGSVFCYFKSLSRLLKKEQVNIAYNKTLFSMFTTLEKQVYEFYDKKYPQKGPLIKWIEKNWLKNQIL
SIO_010081: DB723_RS04775
subclass of: SO_0000673
so part of: DB723_RS04775
location: 4252..4824
location: region:4252-4824:1
so has part: feature:4252-4824:1:exon

WP_151553084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4252-4824:1:exon

DB723_RS04780
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04780
old locus tag: DB723_04780
so part of: sequence
location: 4785..5552
location: region:4785-5552:1
so has part: feature:4785-5552:1:exon
subclass of: SO_0000010

position:4785:1
position: 4785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5552:1
position: 5552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4785-5552:1:exon

DB723_RS04780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04780
old locus tag: DB723_04780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012686425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKKLAKKPNIIAVASIKGGVGKSTSSIMFSAILNKTNKVLLIDLDPQNAVTSYFITQDHPRMELINIYNSYSLMKKDKTFKDIVINVSKNLDFIPSYLELAKFSKEGNQFKELMLRNAVYNYLEDYDYVIIDTPPSLSAELDNALVIADKVVIPVPLERWAVENLPLLINQIKELENNFIGKETKIIHIFASKVEIGRVASTEIMALLKEKYLNKFIGEVHKSEALKRVIDYAVEPKENENYYREYLKILEKI
SIO_010081: DB723_RS04780
subclass of: SO_0000673
so part of: DB723_RS04780
location: 4785..5552
location: region:4785-5552:1
so has part: feature:4785-5552:1:exon

WP_151553086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4785-5552:1:exon

DB723_RS04785
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04785
old locus tag: DB723_04785
so part of: sequence
location: 5607..6146
location: region:5607-6146:1
so has part: feature:5607-6146:1:exon
subclass of: SO_0000010

position:5607:1
position: 5607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6146:1
position: 6146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5607-6146:1:exon

DB723_RS04785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04785
old locus tag: DB723_04785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012615131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MVKSRKIIINDRIVRNNTYINTEERDKKKYELLKNELKNRIEDDIRNKINTMKILLKIKNGKLYILDGYKRFEDFIFDFKIAKTQAYKYIKIAKLIFEGKLEEIDIIENGIDKTLFNLMKDKKIKSKVNLITPLRIRLETQEACDFYKRNLKFTSYLLEDFYQKNKEQLIKKLEKYKNK
SIO_010081: DB723_RS04785
subclass of: SO_0000673
so part of: DB723_RS04785
location: 5607..6146
location: region:5607-6146:1
so has part: feature:5607-6146:1:exon

WP_151553088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5607-6146:1:exon

DB723_RS05730
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05730
so part of: sequence
location: complement(6400..6522)
location: region:6400-6522:-1
so has part: feature:6400-6522:-1:exon
subclass of: SO_0000010

position:6400:-1
position: 6400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6522:-1
position: 6522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6400-6522:-1:exon

DB723_RS05730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSEFVQPELGRITPALIDESLCKFEAKIIAEEIAKLQKS
SIO_010081: DB723_RS05730
subclass of: SO_0000673
so part of: DB723_RS05730
location: complement(6400..6522)
location: region:6400-6522:-1
so has part: feature:6400-6522:-1:exon

WP_267128504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6400-6522:-1:exon

DB723_RS05735
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05735
so part of: sequence
location: complement(6734..6859)
location: region:6734-6859:-1
so has part: feature:6734-6859:-1:exon
subclass of: SO_0000010

position:6734:-1
position: 6734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6859:-1
position: 6859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6734-6859:-1:exon

DB723_RS05735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSELDDEYIKEIEIIRLTKAEETKNLELEWKRELSSLKPNA
SIO_010081: DB723_RS05735
subclass of: SO_0000673
so part of: DB723_RS05735
location: complement(6734..6859)
location: region:6734-6859:-1
so has part: feature:6734-6859:-1:exon

WP_267128506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6734-6859:-1:exon

DB723_RS05365
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05365
so part of: sequence
location: complement(6940..7107)
location: region:6940-7107:-1
so has part: feature:6940-7107:-1:exon
subclass of: SO_0000010

position:6940:-1
position: 6940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7107:-1
position: 7107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6940-7107:-1:exon

DB723_RS05365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKNGLGAAGATIVAHLGQAVIKIVIQIVGKFIWKSLDARKKSESKKLKRSEMKI
SIO_010081: DB723_RS05365
subclass of: SO_0000673
so part of: DB723_RS05365
location: complement(6940..7107)
location: region:6940-7107:-1
so has part: feature:6940-7107:-1:exon

WP_188093274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6940-7107:-1:exon

DB723_RS04790
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04790
old locus tag: DB723_04790
pseudo: true
so part of: sequence
location: complement(8234..>8660)
location: region:8234-8660:-1
so has part: feature:8234-8660:-1:exon
subclass of: SO_0000010

position:8234:-1
position: 8234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8660:-1
position: 8660
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8234-8660:-1:exon

DB723_RS04790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04790
old locus tag: DB723_04790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023104.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: DB723_RS04790
subclass of: SO_0000673
so part of: DB723_RS04790
location: complement(8234..>8660)
location: region:8234-8660:-1
so has part: feature:8234-8660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8234-8660:-1:exon

DB723_RS04795
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04795
old locus tag: DB723_04795
so part of: sequence
location: 8892..9857
location: region:8892-9857:1
so has part: feature:8892-9857:1:exon
subclass of: SO_0000010

position:8892:1
position: 8892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9857:1
position: 9857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8892-9857:1:exon

DB723_RS04795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04795
old locus tag: DB723_04795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010889839.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKKKFLSIYMLLLISLLSCNTSDPNELTRKKMQDKKEKVLGFLEKIQTDDREIVEKHLEGIEKQKELVQTFYVEPVNVQRNSPYYFQEEGIEIKEEKLVPNTDEEKKAEKAISDGRLEFSKLVDDENKLKNESIQLESSFNNIYKEVSELVDSIQVEGYVVGRINHIIKTKLPRAKKYQKQEIQNKLEKQDLINLFNELLEKRGDIEELHAQLNSGLSERASAKHFFEKSQKTLKEAITERLKNERKNWPKLRRTSYSNLAIQAKNEIEDALNQLSISSSKIIKAIKIKEDVEQILQKAKSFLDSSKSNICSSDKFVIFTR
SIO_010081: DB723_RS04795
subclass of: SO_0000673
so part of: DB723_RS04795
location: 8892..9857
location: region:8892-9857:1
so has part: feature:8892-9857:1:exon

WP_151553090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8892-9857:1:exon

DB723_RS04805
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04805
old locus tag: DB723_04805
pseudo: true
so part of: sequence
location: complement(10532..>10747)
location: region:10532-10747:-1
so has part: feature:10532-10747:-1:exon
subclass of: SO_0000010

position:10532:-1
position: 10532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10747:-1
position: 10747
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10532-10747:-1:exon

DB723_RS04805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04805
old locus tag: DB723_04805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882228.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: threonylcarbamoyl-AMP synthase
SIO_010081: DB723_RS04805
subclass of: SO_0000673
so part of: DB723_RS04805
location: complement(10532..>10747)
location: region:10532-10747:-1
so has part: feature:10532-10747:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10532-10747:-1:exon

DB723_RS04810
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04810
old locus tag: DB723_04810
pseudo: true
so part of: sequence
location: complement(<10724..10813)
location: region:10724-10813:-1
so has part: feature:10724-10813:-1:exon
subclass of: SO_0000010

position:10724:-1
position: 10724
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10813:-1
position: 10813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10724-10813:-1:exon

DB723_RS04810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04810
old locus tag: DB723_04810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672724.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: DB723_RS04810
subclass of: SO_0000673
so part of: DB723_RS04810
location: complement(<10724..10813)
location: region:10724-10813:-1
so has part: feature:10724-10813:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10724-10813:-1:exon

DB723_RS04815
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04815
old locus tag: DB723_04815
so part of: sequence
location: complement(10789..11343)
location: region:10789-11343:-1
so has part: feature:10789-11343:-1:exon
subclass of: SO_0000010

position:10789:-1
position: 10789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11343:-1
position: 11343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10789-11343:-1:exon

DB723_RS04815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04815
old locus tag: DB723_04815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKNALKHIQINKPMVNKKRKEIFIKKEKENNKTMYHTKIMKDLHKLGIDTKKNQCRISFQELYYQTAFQELRLYPVKEGDKFLGIFYGYRKPIKNFLVKYEVNGIKKAYTFSKTYYIEFRFRKGSVFCYLRGLFRLLKKEKINTQYNKSLVDRFINLEKHVYEFYNKKHLGEGFIIKWILKNLK
SIO_010081: DB723_RS04815
subclass of: SO_0000673
so part of: DB723_RS04815
location: complement(10789..11343)
location: region:10789-11343:-1
so has part: feature:10789-11343:-1:exon

WP_151553091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10789-11343:-1:exon

DB723_RS04820
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04820
old locus tag: DB723_04820
so part of: sequence
location: complement(11385..12458)
location: region:11385-12458:-1
so has part: feature:11385-12458:-1:exon
subclass of: SO_0000010

position:11385:-1
position: 11385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12458:-1
position: 12458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11385-12458:-1:exon

DB723_RS04820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04820
old locus tag: DB723_04820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703873.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MTNLLNNRKDAPYNNKLQHKLIVLISTLKYVNRKYQKYTQSNILYYFNENLKRNGQAPIKLKTMQNYLYKLEKEIKATTNYYKHLGVNCGTEIYYKLNYPKKECYLKINQYFKVKKYSRFKSRLNNYLQDKFTKTGNVDLGECFNNKNNNIKEDKSNTQIEKYQIKKYFNKCNFLSKRTLSLLNLNIDKNKLIEILRIVKRIEMSLTNNKNSHFNKPCFKKKQDRLKEILNNIQKQLNKKGYDAAQLKIHIQNLYERYKGKPHFIIENQKYKDLSNIKSKLKKSIEIKKENPSKNYKHIKINTFNILVEQLKKEKKIEVLKPIVKTYLNSKKKLEYNKIFHTYYYELLEIIKIKKIF
SIO_010081: DB723_RS04820
subclass of: SO_0000673
so part of: DB723_RS04820
location: complement(11385..12458)
location: region:11385-12458:-1
so has part: feature:11385-12458:-1:exon

WP_151553092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11385-12458:-1:exon

DB723_RS05560
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05560
old locus tag: DB723_04825
pseudo: true
so part of: sequence
location: 12804..13496
location: region:12804-13496:1
so has part: feature:12804-13496:1:exon
subclass of: SO_0000010

position:12804:1
position: 12804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13496:1
position: 13496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12804-13496:1:exon

DB723_RS05560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05560
old locus tag: DB723_04825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017715.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ERF family protein
SIO_010081: DB723_RS05560
subclass of: SO_0000673
so part of: DB723_RS05560
location: 12804..13496
location: region:12804-13496:1
so has part: feature:12804-13496:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12804-13496:1:exon

DB723_RS05370
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05370
so part of: sequence
location: 13903..14070
location: region:13903-14070:1
so has part: feature:13903-14070:1:exon
subclass of: SO_0000010

position:13903:1
position: 13903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14070:1
position: 14070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13903-14070:1:exon

DB723_RS05370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGNVINGFGFKNITSSKETINITKKIIENALKEIIKELKKLEEEFKDFKPLIVK
SIO_010081: DB723_RS05370
subclass of: SO_0000673
so part of: DB723_RS05370
location: 13903..14070
location: region:13903-14070:1
so has part: feature:13903-14070:1:exon

WP_188093275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13903-14070:1:exon

DB723_RS04835
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04835
old locus tag: DB723_04835
so part of: sequence
location: complement(14492..15661)
location: region:14492-15661:-1
so has part: feature:14492-15661:-1:exon
subclass of: SO_0000010

position:14492:-1
position: 14492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15661:-1
position: 15661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14492-15661:-1:exon

DB723_RS04835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04835
old locus tag: DB723_04835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012597405.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease
translation: MLDKDINFIKSIKDVSRKIQKAKDFIENEAQTRQNLIDPFLDAMGYDHTDISIVKVEDKADIPKLNGLKKVDYIIYPTRKDKEPTILIEAKYHNNREKLESHLKQLKPYFENIRSQEKRVEFGILTDGIEYRFYTDLDKDNLLDNEPFMVIDLEKLTSKDFEYLKKFSRNFLNIEEAKAFALEKKYTDKLLAYLKKEIKNTSDDFLEFFKTKIGFKKTCADKIFNNFIKNAFSMLNENNDILLNNKKNNMGDGVEPGIKNNSIKPENLKKFEKLNYDMKTIYKKLECFIFALNPNEIEKVETKHYTGFKVQDRYFVDFVFNPGANKINITVKVALSQITLKEGFTRNMSNIGKLGNGNIQILCTSDSQIEEIKNLVKLSYNNIFLKIKK
SIO_010081: DB723_RS04835
subclass of: SO_0000673
so part of: DB723_RS04835
location: complement(14492..15661)
location: region:14492-15661:-1
so has part: feature:14492-15661:-1:exon

WP_151553093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14492-15661:-1:exon

DB723_RS04845
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04845
old locus tag: DB723_04845
pseudo: true
so part of: sequence
location: 17189..17841
location: region:17189-17841:1
so has part: feature:17189-17841:1:exon
subclass of: SO_0000010

position:17189:1
position: 17189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17841:1
position: 17841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17189-17841:1:exon

DB723_RS04845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04845
old locus tag: DB723_04845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539539.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: DB723_RS04845
subclass of: SO_0000673
so part of: DB723_RS04845
location: 17189..17841
location: region:17189-17841:1
so has part: feature:17189-17841:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17189-17841:1:exon

DB723_RS04855
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04855
old locus tag: DB723_04855
so part of: sequence
location: 20406..20915
location: region:20406-20915:1
so has part: feature:20406-20915:1:exon
subclass of: SO_0000010

position:20406:1
position: 20406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20915:1
position: 20915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20406-20915:1:exon

DB723_RS04855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04855
old locus tag: DB723_04855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKALLLLIFFLLIPKRFIFSSEVSEEVVILNDSNRHNLSLILELKTKFGAFALRRYHEGYVDLDFNIQIINSTEIVFKKVYINGVSVIDHPINPRSRFIDGANHFHFDMSFFYDGEKMNKIRKLAEANGIDVYVECFDEINNEKKKYSFKASRKNSVHFYSAFDAIFYK
SIO_010081: DB723_RS04855
subclass of: SO_0000673
so part of: DB723_RS04855
location: 20406..20915
location: region:20406-20915:1
so has part: feature:20406-20915:1:exon

WP_151553094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20406-20915:1:exon

DB723_RS04860
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04860
old locus tag: DB723_04860
so part of: sequence
location: 20928..21548
location: region:20928-21548:1
so has part: feature:20928-21548:1:exon
subclass of: SO_0000010

position:20928:1
position: 20928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21548:1
position: 21548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20928-21548:1:exon

DB723_RS04860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04860
old locus tag: DB723_04860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890264.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein BptA
translation: MGKILFFGLLAICIFFIFFFYKQKENNVIYNKIVEKFEDNVLIDETYTYPLKKDNLKKLVFIKSQLIVPELEHEKMMGGTGYLVDAYRALNTVYKFDFKVHDNKILGFKSVIFEGFEDAEVSKHENDLPSEKWQQLKDFNIGDPNINKKFFHLKFPFLVKNTLQVTLSKRFFNKIKKLERLKIVLISNEDREYKIDIENFLLKYNL
SIO_010081: DB723_RS04860
subclass of: SO_0000673
so part of: DB723_RS04860
location: 20928..21548
location: region:20928-21548:1
so has part: feature:20928-21548:1:exon

WP_151553095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20928-21548:1:exon

DB723_RS04865
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04865
old locus tag: DB723_04865
so part of: sequence
location: 22655..23266
location: region:22655-23266:1
so has part: feature:22655-23266:1:exon
subclass of: SO_0000010

position:22655:1
position: 22655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23266:1
position: 23266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22655-23266:1:exon

DB723_RS04865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04865
old locus tag: DB723_04865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isochorismatase family protein
translation: MSSKEDFILKIAENSALILIDIQNDFLESGTLPVANSNEIIPLINQLQNYFQNIIATKDWHCKNHVSFLNSGGIWPEHCVKNTWGAEFPNSLNTQRIKKVFFKGTNRYYDSYSGFYDDDIKRKQTGFRLYLENNSINTLFIVGLALDFCVKETIIDAINLGFQVFLIIDATRSITTTPELIIQELKKLNVLNCFSKDIFDSKD
SIO_010081: DB723_RS04865
subclass of: SO_0000673
so part of: DB723_RS04865
location: 22655..23266
location: region:22655-23266:1
so has part: feature:22655-23266:1:exon

WP_151553097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22655-23266:1:exon

DB723_RS04875
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04875
old locus tag: DB723_04875
pseudo: true
so part of: sequence
location: complement(24089..24916)
location: region:24089-24916:-1
so has part: feature:24089-24916:-1:exon
subclass of: SO_0000010

position:24089:-1
position: 24089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24916:-1
position: 24916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24089-24916:-1:exon

DB723_RS04875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04875
old locus tag: DB723_04875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
SIO_010081: DB723_RS04875
subclass of: SO_0000673
so part of: DB723_RS04875
location: complement(24089..24916)
location: region:24089-24916:-1
so has part: feature:24089-24916:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24089-24916:-1:exon

DB723_RS04880
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04880
old locus tag: DB723_04880
pseudo: true
so part of: sequence
location: complement(25132..25965)
location: region:25132-25965:-1
so has part: feature:25132-25965:-1:exon
subclass of: SO_0000010

position:25132:-1
position: 25132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25965:-1
position: 25965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25132-25965:-1:exon

DB723_RS04880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04880
old locus tag: DB723_04880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
SIO_010081: DB723_RS04880
subclass of: SO_0000673
so part of: DB723_RS04880
location: complement(25132..25965)
location: region:25132-25965:-1
so has part: feature:25132-25965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25132-25965:-1:exon

DB723_RS04885
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04885
old locus tag: DB723_04885
so part of: sequence
location: complement(26181..27014)
location: region:26181-27014:-1
so has part: feature:26181-27014:-1:exon
subclass of: SO_0000010

position:26181:-1
position: 26181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27014:-1
position: 27014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26181-27014:-1:exon

DB723_RS04885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04885
old locus tag: DB723_04885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNFKLNIIKLNVITAILTSICISCAPFGNVNPNKLKNPTTSKKLKKTKRSNNFRNLKKTNNHINSENSAENNQNLENESQNSKSSNQNPQEETTISKLENIGKDMEAQEKEEDTQIAKINDTQYDFLETFKLQKDDIFMHNTKMKLKRIIYPSLNYDTEKILALKEILEKLDKTIKNRRIAGKFLETSRDIQLQQEDMHLKKIQNELRTLSKEKAEKLLQHVERDLKIKQNFVKTLNATIEAYNKNSGNIKTDVEALANHIKEKYSHALNLLNQAD
SIO_010081: DB723_RS04885
subclass of: SO_0000673
so part of: DB723_RS04885
location: complement(26181..27014)
location: region:26181-27014:-1
so has part: feature:26181-27014:-1:exon

WP_151553099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26181-27014:-1:exon

DB723_RS04890
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04890
old locus tag: DB723_04890
so part of: sequence
location: complement(27230..28063)
location: region:27230-28063:-1
so has part: feature:27230-28063:-1:exon
subclass of: SO_0000010

position:27230:-1
position: 27230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28063:-1
position: 28063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27230-28063:-1:exon

DB723_RS04890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04890
old locus tag: DB723_04890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNFKLNIIKLNVITAILTSICISCAPFGNVNPNKLKNPTTSKKLKKTKRSNNFRNLKKTNNHINSENSAENNQNLENESQNSKSSNQNPQEETTISKLENIGKDMEAQEKEEDTQIAKINDTQYDFLETFKLQKDDIFMHNTKMKLKRIIYPSLNYDTEKILALKEILEKLDKTIKNRRIAGKFLETSRDIQLQQEDMHLKKIQNELRTLSKEKAEKLLQHVERDLKIKQNFVKTLNATIEAYNKNSGNIKTDVEALANHIKEKYSHALNLLNQAD
SIO_010081: DB723_RS04890
subclass of: SO_0000673
so part of: DB723_RS04890
location: complement(27230..28063)
location: region:27230-28063:-1
so has part: feature:27230-28063:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27230-28063:-1:exon

DB723_RS04895
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04895
old locus tag: DB723_04895
so part of: sequence
location: complement(28279..29112)
location: region:28279-29112:-1
so has part: feature:28279-29112:-1:exon
subclass of: SO_0000010

position:28279:-1
position: 28279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29112:-1
position: 29112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28279-29112:-1:exon

DB723_RS04895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04895
old locus tag: DB723_04895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNFKLNIIKLNVITAILTSICISCTPFGNVNPNKLKNPTTSKKLKKTKRSNNFRNLKKTNNHINSENSAENNQNLENESQNSKSSNQNPQEETTISKLENIGKDMEAQEKEEDTQIAKINDTQYDFLETFKLQKDDIFMHNTKMKLKRIIYPSLNYDTEKILALKEILEKLDKTIKNRRIAGKFLETSRDIQLQQEDMHLKKIQNELRTLSKEKAEKLLQHVERDLKIKQNFVKTLNATIEAYNKNSGNIKTDVEALANHIKEKYSHALNLLNQAD
SIO_010081: DB723_RS04895
subclass of: SO_0000673
so part of: DB723_RS04895
location: complement(28279..29112)
location: region:28279-29112:-1
so has part: feature:28279-29112:-1:exon

WP_151553101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28279-29112:-1:exon

DB723_RS04900
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04900
old locus tag: DB723_04900
so part of: sequence
location: complement(29337..30170)
location: region:29337-30170:-1
so has part: feature:29337-30170:-1:exon
subclass of: SO_0000010

position:29337:-1
position: 29337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30170:-1
position: 30170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29337-30170:-1:exon

DB723_RS04900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04900
old locus tag: DB723_04900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNPKLNIIKLNVITAILTSICISCAPFGNVNPNKLKNSTTSKKLKKTKRSNNFRNLKKTNSHTNSENSAENNQNLKNESQNSKSSNQNPQEETTISKLENIGKAVEAQEKEKDIQMAKINDTQHDFLETFKLQNDDIFMHNTKMKLKRIIYSSLNYDTKKILALKEILEKLDKTIKNQGIARKLLETSRDIQLKQEDMHLKKIQNELRTLGKEKAEKLLQHVERDLKIKQNFVKTLNATIEAYNKNSGNIKTDDEALANHIKEKYSHALNLLNQAD
SIO_010081: DB723_RS04900
subclass of: SO_0000673
so part of: DB723_RS04900
location: complement(29337..30170)
location: region:29337-30170:-1
so has part: feature:29337-30170:-1:exon

WP_151553103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29337-30170:-1:exon

DB723_RS05740
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05740
so part of: sequence
location: complement(30395..30574)
location: region:30395-30574:-1
so has part: feature:30395-30574:-1:exon
subclass of: SO_0000010

position:30395:-1
position: 30395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30574:-1
position: 30574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30395-30574:-1:exon

DB723_RS05740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05740
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MLQHVERDLKIKQNFVKTLNATIEAYNKNSGNIKTDVEALANHIKEKYSHALDLLNQAD
SIO_010081: DB723_RS05740
subclass of: SO_0000673
so part of: DB723_RS05740
location: complement(30395..30574)
location: region:30395-30574:-1
so has part: feature:30395-30574:-1:exon

WP_267128508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30395-30574:-1:exon

DB723_RS05745
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05745
so part of: sequence
location: complement(30595..30798)
location: region:30595-30798:-1
so has part: feature:30595-30798:-1:exon
subclass of: SO_0000010

position:30595:-1
position: 30595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30798:-1
position: 30798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30595-30798:-1:exon

DB723_RS05745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05745
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKLKRIIYSSLNYDTKKILALKEILEKLDKTIKNQGIARKFLETSRDIQLQQEDMHLKKIKDALRAL
SIO_010081: DB723_RS05745
subclass of: SO_0000673
so part of: DB723_RS05745
location: complement(30595..30798)
location: region:30595-30798:-1
so has part: feature:30595-30798:-1:exon

WP_267128510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30595-30798:-1:exon

DB723_RS05750
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05750
so part of: sequence
location: complement(30806..30946)
location: region:30806-30946:-1
so has part: feature:30806-30946:-1:exon
subclass of: SO_0000010

position:30806:-1
position: 30806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30946:-1
position: 30946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30806-30946:-1:exon

DB723_RS05750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05750
inference: COORDINATES: protein motif:HMM:NF033729.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MSKLENIGKAVEAQEKEKDIQIAKIGDTQYDFLETFKLQNDDIFIV
SIO_010081: DB723_RS05750
subclass of: SO_0000673
so part of: DB723_RS05750
location: complement(30806..30946)
location: region:30806-30946:-1
so has part: feature:30806-30946:-1:exon

WP_267128512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30806-30946:-1:exon

DB723_RS05565
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05565
pseudo: true
so part of: sequence
location: complement(32032..32418)
location: region:32032-32418:-1
so has part: feature:32032-32418:-1:exon
subclass of: SO_0000010

position:32032:-1
position: 32032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32418:-1
position: 32418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32032-32418:-1:exon

DB723_RS05565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05565
inference: COORDINATES: protein motif:HMM:NF018486.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: DB723_RS05565
subclass of: SO_0000673
so part of: DB723_RS05565
location: complement(32032..32418)
location: region:32032-32418:-1
so has part: feature:32032-32418:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32032-32418:-1:exon

DB723_RS05570
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05570
so part of: sequence
location: complement(32485..32778)
location: region:32485-32778:-1
so has part: feature:32485-32778:-1:exon
subclass of: SO_0000010

position:32485:-1
position: 32485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32778:-1
position: 32778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32485-32778:-1:exon

DB723_RS05570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNKPNKTSNQEDQNGLKITNNKRKGHKKLSQVVQQHQEIEKAKFNVKTDSGISYSNRNIYNSIPEVKEEIISEITEEVIISRITIPEIFKEVVTNP
SIO_010081: DB723_RS05570
subclass of: SO_0000673
so part of: DB723_RS05570
location: complement(32485..32778)
location: region:32485-32778:-1
so has part: feature:32485-32778:-1:exon

WP_228459427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32485-32778:-1:exon

DB723_RS05575
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05575
so part of: sequence
location: complement(32762..32926)
location: region:32762-32926:-1
so has part: feature:32762-32926:-1:exon
subclass of: SO_0000010

position:32762:-1
position: 32762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32926:-1
position: 32926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32762-32926:-1:exon

DB723_RS05575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLLKIFLCVFLLSSLVNCKFDGLNPFAKKGGEEKTDSILAKLLQQLSKNAEQT
SIO_010081: DB723_RS05575
subclass of: SO_0000673
so part of: DB723_RS05575
location: complement(32762..32926)
location: region:32762-32926:-1
so has part: feature:32762-32926:-1:exon

WP_228459428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32762-32926:-1:exon

DB723_RS04915
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS04915
old locus tag: DB723_04915
pseudo: true
so part of: sequence
location: complement(<33656..>34088)
location: region:33656-34088:-1
so has part: feature:33656-34088:-1:exon
subclass of: SO_0000010

position:33656:-1
position: 33656
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:34088:-1
position: 34088
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33656-34088:-1:exon

DB723_RS04915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS04915
old locus tag: DB723_04915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012622386.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: DB723_RS04915
subclass of: SO_0000673
so part of: DB723_RS04915
location: complement(<33656..>34088)
location: region:33656-34088:-1
so has part: feature:33656-34088:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33656-34088:-1:exon

DB723_RS05580
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05580
old locus tag: DB723_04920
pseudo: true
so part of: sequence
location: <34135..>34349
location: region:34135-34349:1
so has part: feature:34135-34349:1:exon
subclass of: SO_0000010

position:34135:1
position: 34135
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:34349:1
position: 34349
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34135-34349:1:exon

DB723_RS05580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05580
old locus tag: DB723_04920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004789523.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: threonylcarbamoyl-AMP synthase
SIO_010081: DB723_RS05580
subclass of: SO_0000673
so part of: DB723_RS05580
location: <34135..>34349
location: region:34135-34349:1
so has part: feature:34135-34349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34135-34349:1:exon

DB723_RS05585
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05585
so part of: sequence
location: 34378..34551
location: region:34378-34551:1
so has part: feature:34378-34551:1:exon
subclass of: SO_0000010

position:34378:1
position: 34378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34551:1
position: 34551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34378-34551:1:exon

DB723_RS05585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662141.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNIFDYLRFNAIEICVLKDMKRVIYKFYESPDIENDVDFISLASSLKSQNIFTEFF
SIO_010081: DB723_RS05585
subclass of: SO_0000673
so part of: DB723_RS05585
location: 34378..34551
location: region:34378-34551:1
so has part: feature:34378-34551:1:exon

WP_228459429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34378-34551:1:exon

DB723_RS05590
type: Gene
subclass of: SO_0000704
RO_0002162: 2761123
locus tag: DB723_RS05590
so part of: sequence
location: 34586..34819
location: region:34586-34819:1
so has part: feature:34586-34819:1:exon
subclass of: SO_0000010

position:34586:1
position: 34586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34819:1
position: 34819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34586-34819:1:exon

DB723_RS05590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2761123
locus tag: DB723_RS05590
inference: COORDINATES: protein motif:HMM:NF033726.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFLKIKLKLGNNVFENKIFIFYLCISDVSFFKLLYLLDRNSFDDCNIDNFDDWPILIYQKFREIKKSLELILCSDSE
SIO_010081: DB723_RS05590
subclass of: SO_0000673
so part of: DB723_RS05590
location: 34586..34819
location: region:34586-34819:1
so has part: feature:34586-34819:1:exon

WP_228459430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34586-34819:1:exon