Borrelia maritima strain CA690 plasmid lp54, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
Borrelia maritima sp. nov., a novel species of the Borrelia burgdorferi sensu lato complex, occupying a basal position to North American species
Submitted (02-OCT-2019) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP044536.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-MAY-2018\nAssembly Method :: SPAdes v. 3.9\nAssembly Name :: CA690\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:40:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,083\nCDSs (total) :: 1,043\nGenes (coding) :: 997\nCDSs (with protein) :: 997\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 32 of 46\nPseudo Genes (incomplete) :: 13 of 46\nPseudo Genes (internal stop) :: 27 of 46\nPseudo Genes (multiple problems) :: 21 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Department of Environmental Science, University of California
COORDINATES: similar to AA sequence:RefSeq:WP_011187144.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010258570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703769.1
COORDINATES: protein motif:HMM:NF022387.2
COORDINATES: protein motif:HMM:NF015399.2
DUF276 is restricted to Borreliella and related spirochetes.; DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
DUF276 is restricted to Borreliella and related spirochetes.; frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017093.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: similar to AA sequence:RefSeq:WP_011187153.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258115.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014992.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890378.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023200.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695375.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703782.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_010258341.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012784226.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703786.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023210.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258365.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014695363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890384.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011703795.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257702.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257705.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023221.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695351.1
COORDINATES: protein motif:HMM:NF017382.2
COORDINATES: protein motif:HMM:NF017435.2
COORDINATES: similar to AA sequence:RefSeq:WP_014540018.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018989.2
COORDINATES: protein motif:HMM:NF018705.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695342.1
COORDINATES: protein motif:HMM:NF017448.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257117.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257121.1
COORDINATES: protein motif:HMM:NF016969.2
COORDINATES: protein motif:HMM:NF017423.2
COORDINATES: similar to AA sequence:RefSeq:WP_010890392.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615000.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784236.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703823.1
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: similar to AA sequence:RefSeq:WP_011703827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614999.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784240.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]