Pontibrevibacter nitratireducens strain ALG8 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pontibrevibacter.
Complete genome sequence of Monaibacterium sp. ALG8 with diverse plasmids
Submitted (04-MAR-2020) College of Life Science, Zhejiang Sci-Tech University, 928 No.2 Avenue, Xiasha Higher Education Zone, HangZhou 310018, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP049812.1.\nBacteria and source DNA available from Cong Sun.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. DEC-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/27/2023 03:21:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,480\nCDSs (total) :: 3,427\nGenes (coding) :: 3,361\nCDSs (with protein) :: 3,361\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 45 of 66\nPseudo Genes (incomplete) :: 41 of 66\nPseudo Genes (internal stop) :: 12 of 66\nPseudo Genes (multiple problems) :: 24 of 66\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007604758.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011974795.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019460.2
COORDINATES: similar to AA sequence:RefSeq:WP_005981976.1
COORDINATES: similar to AA sequence:RefSeq:WP_005625664.1
COORDINATES: similar to AA sequence:RefSeq:WP_005981986.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011655527.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824541.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503751.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009804243.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503749.1
COORDINATES: protein motif:HMM:NF020835.2
COORDINATES: similar to AA sequence:RefSeq:WP_009503747.1
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004122578.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007120600.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009503743.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187377.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]