Borrelia puertoricensis strain SUM plasmid lp35, complete sequence.
type: Entry
definition: Borrelia puertoricensis strain SUM plasmid lp35, complete sequence.
sequence version: NZ_CP075395.1
sequence date: 2022-05-23
sequence: sequence
division: CON
label: NZ_CP075395.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN19000909
keyword: RefSeq
source: Borrelia puertoricensis
organism: Borrelia puertoricensis
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075395.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1138.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/23/2022 17:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,976\nCDSs (total) :: 1,938\nGenes (coding) :: 1,830\nCDSs (with protein) :: 1,830\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 72 of 108\nPseudo Genes (incomplete) :: 37 of 108\nPseudo Genes (internal stop) :: 24 of 108\nPseudo Genes (multiple problems) :: 23 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 34741
topology: linear
so has quality: SO_0000987
location: 1..34741
location: region:1-34741:1
RO_0002162: 2756107

NZ_CP075395
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN19000909
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (17-MAY-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34741:1
position: 34741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34741:1:source
so part of: sequence
organism: Borrelia puertoricensis
mol type: genomic DNA
strain: SUM
isolation source: tick
host: Alectorobius puertoricensis
type material: type strain of Borrelia puertoricensis
plasmid: lp35
country: Panama
collection date: 2019-01-01

2756107
type: Taxonomy
SIO_000068: taxonomy

bpuSUM_RS08315
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08315
old locus tag: bpuSUM_001657
so part of: sequence
location: 275..949
location: region:275-949:1
so has part: feature:275-949:1:exon
subclass of: SO_0000010

position:275:1
position: 275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949:1
position: 949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:275-949:1:exon

bpuSUM_RS08315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08315
old locus tag: bpuSUM_001657
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKIFLLLTVIINLSADRTEERKQYDIYDDAKKKLVRVKDWKTNVNNLKNIGPYFTKFTERIKSLTDKKLAYEIQDVFTTSLCKPISEDENVVPKEHIPLFEKYYKFIKALKHKNLDQAAYILYEIYDLNKMFTNIDESIKTTHYLLITYIKVKDKNQHKAVYKKLENIYDKLRQKYFSILNILDHNDIDNNFEKFMLKFIEFHKLVAHMDSNITNLMIYAYLV
SIO_010081: bpuSUM_RS08315
subclass of: SO_0000673
so part of: bpuSUM_RS08315
location: 275..949
location: region:275-949:1
so has part: feature:275-949:1:exon

WP_247067868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:275-949:1:exon

bpuSUM_RS08320
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08320
old locus tag: bpuSUM_001658
so part of: sequence
location: 1093..2250
location: region:1093-2250:1
so has part: feature:1093-2250:1:exon
subclass of: SO_0000010

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2250:1
position: 2250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1093-2250:1:exon

bpuSUM_RS08320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08320
old locus tag: bpuSUM_001658
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMMNTNEIDMKNIFSDNQLSKINNKSTKDISPKQTKPQKSISVLTQPETKKKKFSLPTHKDITIITADTSQSKNYSNSNIIIDNASIITSNTDENIVTQKIVINTPAKTDLTHTTEHNNISTLDDDTTYPSQNNTNNPSPQNSKTIEHPIPLIGNSKTPLNALNGESHNIQYGYTYNLHYDSNPIISGSYSDSSITIEEYEFDEDEDEDSKLETRLDNQYKFNLNKTTNSVEQALKLAEQIKDDLEKVEFHRIKLSNYYGIRAEEHEKQTAREELSKFTKDKLEADLKKLLSEIEKGFNAATILITYNDYGGNLQSDLSAKTKLDELKTEVSSLITKIQKLNNKNYQAYPTSSYDNYQSYQALKNPYSKLTLVKDLLTHTGTLTR
SIO_010081: bpuSUM_RS08320
subclass of: SO_0000673
so part of: bpuSUM_RS08320
location: 1093..2250
location: region:1093-2250:1
so has part: feature:1093-2250:1:exon

WP_247067870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1093-2250:1:exon

bpuSUM_RS08325
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08325
old locus tag: bpuSUM_001659
so part of: sequence
location: complement(2337..3194)
location: region:2337-3194:-1
so has part: feature:2337-3194:-1:exon
subclass of: SO_0000010

position:2337:-1
position: 2337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3194:-1
position: 3194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2337-3194:-1:exon

bpuSUM_RS08325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08325
old locus tag: bpuSUM_001659
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537773.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MRTNLFIFTLLIIGLVSCDLNSKLLGSKKGNKDVPKKVVDGVQGDESYKQANVDDLAKVVNDIQGDEPAKEDKDVADKAELISELKKDTESLITVVKKDKAEVEDGNQYEMKDEVFKAVTDAVNNKTLDSVENKEARRLFYSSLGYDKGKIKEFAKILKKIESDAANKGTWIKDIISAGREHLQSNFEKVIDKLEKSKEKLAKLSLVDLKEVKTKFDEIKSQREAFIKAVDSLIASYKAKTDNIDSDSEKLIKHVEKKYKDLITVKIPGVKSVYDKIVGVLDTIK
SIO_010081: bpuSUM_RS08325
subclass of: SO_0000673
so part of: bpuSUM_RS08325
location: complement(2337..3194)
location: region:2337-3194:-1
so has part: feature:2337-3194:-1:exon

WP_247067872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2337-3194:-1:exon

bpuSUM_RS08330
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08330
old locus tag: bpuSUM_001660
so part of: sequence
location: complement(3830..4738)
location: region:3830-4738:-1
so has part: feature:3830-4738:-1:exon
subclass of: SO_0000010

position:3830:-1
position: 3830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4738:-1
position: 4738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3830-4738:-1:exon

bpuSUM_RS08330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08330
old locus tag: bpuSUM_001660
inference: COORDINATES: protein motif:HMM:NF033721.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKRSILSVCMLALLCLLSCDMNALNDLLNEVREKVLDESKDNKDLNHEQGNQEQKEDVIDDFEKGVEIQQDMEIQPVNSGFEVSKQVDPYYVQEEVIKIEEKDLVPSTESEKEAQEEIEKAESVFQASEFAKLTEERMLGLKNDYEQIKTSFYDIFSELNNKIQNKIERYSRRNKRQINRIQIQKLIQSYNQLNEQRSNIDRLMIQVDSGLDELGSAKLFFNKAKVTLKEGITERLINKHRNYWRSRRGESDLVSRQARREAENALTQLESSSMKLIEAKVIKKEIEELISEAKTVLENFAR
SIO_010081: bpuSUM_RS08330
subclass of: SO_0000673
so part of: bpuSUM_RS08330
location: complement(3830..4738)
location: region:3830-4738:-1
so has part: feature:3830-4738:-1:exon

WP_247067875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3830-4738:-1:exon

bpuSUM_RS08335
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08335
old locus tag: bpuSUM_001661
pseudo: true
so part of: sequence
location: complement(5122..6108)
location: region:5122-6108:-1
so has part: feature:5122-6108:-1:exon
subclass of: SO_0000010

position:5122:-1
position: 5122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6108:-1
position: 6108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5122-6108:-1:exon

bpuSUM_RS08335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08335
old locus tag: bpuSUM_001661
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08335
subclass of: SO_0000673
so part of: bpuSUM_RS08335
location: complement(5122..6108)
location: region:5122-6108:-1
so has part: feature:5122-6108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5122-6108:-1:exon

bpuSUM_RS08340
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08340
old locus tag: bpuSUM_001662
pseudo: true
so part of: sequence
location: complement(6200..7222)
location: region:6200-7222:-1
so has part: feature:6200-7222:-1:exon
subclass of: SO_0000010

position:6200:-1
position: 6200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7222:-1
position: 7222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6200-7222:-1:exon

bpuSUM_RS08340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08340
old locus tag: bpuSUM_001662
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08340
subclass of: SO_0000673
so part of: bpuSUM_RS08340
location: complement(6200..7222)
location: region:6200-7222:-1
so has part: feature:6200-7222:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6200-7222:-1:exon

bpuSUM_RS08345
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08345
old locus tag: bpuSUM_001663
pseudo: true
so part of: sequence
location: complement(7312..8391)
location: region:7312-8391:-1
so has part: feature:7312-8391:-1:exon
subclass of: SO_0000010

position:7312:-1
position: 7312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8391:-1
position: 8391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7312-8391:-1:exon

bpuSUM_RS08345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08345
old locus tag: bpuSUM_001663
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633309.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08345
subclass of: SO_0000673
so part of: bpuSUM_RS08345
location: complement(7312..8391)
location: region:7312-8391:-1
so has part: feature:7312-8391:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7312-8391:-1:exon

bpuSUM_RS08350
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08350
old locus tag: bpuSUM_001664
so part of: sequence
location: complement(8594..9244)
location: region:8594-9244:-1
so has part: feature:8594-9244:-1:exon
subclass of: SO_0000010

position:8594:-1
position: 8594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9244:-1
position: 9244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8594-9244:-1:exon

bpuSUM_RS08350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08350
old locus tag: bpuSUM_001664
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633340.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MKRITLCALFLTLFLLSSCNTSGAATKDGQAAKSDGTLIDLVTITKNIKDSVAFAKSVKEIHTLVKSIDELAKAIGKKIKNDGTLEAVADKNGSLIAGVVSIAAAIEAKVGELKIADSLKGLNGKVKDVEDKTKAFTAKLKNQHAVLGAADGATTDENAKKAIDYVNKANGDNGAKELGEINTAIDALLNDAEAAVTSAINVLTTSTKSASPAQSN
SIO_010081: bpuSUM_RS08350
subclass of: SO_0000673
so part of: bpuSUM_RS08350
location: complement(8594..9244)
location: region:8594-9244:-1
so has part: feature:8594-9244:-1:exon

WP_247067877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8594-9244:-1:exon

bpuSUM_RS08355
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08355
old locus tag: bpuSUM_001665
so part of: sequence
location: complement(9372..10388)
location: region:9372-10388:-1
so has part: feature:9372-10388:-1:exon
subclass of: SO_0000010

position:9372:-1
position: 9372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10388:-1
position: 10388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9372-10388:-1:exon

bpuSUM_RS08355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08355
old locus tag: bpuSUM_001665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKRITLCALLMTLFLLLSCGSGTTSAEDTQGRFLKSVISLGNDFLNVFTSLSDMVGGVLGFNTNTKKSDVAVYFKTIHDTLSSTKTSLEKIVSDMKSENNPNAAITETAINKLVGETLNKIIDGAKTASEAIGSDASEPIANVATGDAAGTAGGDVDKLVSGMKSILDVVLKNEGKHNAGTEKKADGLTARTDNGDGEAGKLFASDNAGANAKKAAADAAKAVGAVTGADILQSMVKNGTNAAADAAKANAKDGTIAGAIALRAMAKGGKFAGKSDAEYAPEVKGVAVSAVNKALGTLTIAIRNTIDSGLKTVKEAMKINPTDTPLTTDNQTPETKGQ
SIO_010081: bpuSUM_RS08355
subclass of: SO_0000673
so part of: bpuSUM_RS08355
location: complement(9372..10388)
location: region:9372-10388:-1
so has part: feature:9372-10388:-1:exon

WP_247067879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9372-10388:-1:exon

bpuSUM_RS08360
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08360
so part of: sequence
location: complement(10570..11103)
location: region:10570-11103:-1
so has part: feature:10570-11103:-1:exon
subclass of: SO_0000010

position:10570:-1
position: 10570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11103:-1
position: 11103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10570-11103:-1:exon

bpuSUM_RS08360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLAQPVITQQMVIAELTKAGINRDIAIDLSYRYYKNELTYKDIEYLETTFNLKLEKVEALLQAEIKSVELSLQAEIQRVETTLKSDIRDLDTKIDTVRSELKSDIKDLDTKIDTVENNLNTKIDTKFNELDTKIDVNKMELKSTLRLHGWMFGTIITLNIGIFLTLMSIVYSLLNK
SIO_010081: bpuSUM_RS08360
subclass of: SO_0000673
so part of: bpuSUM_RS08360
location: complement(10570..11103)
location: region:10570-11103:-1
so has part: feature:10570-11103:-1:exon

WP_247067881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10570-11103:-1:exon

bpuSUM_RS08365
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08365
old locus tag: bpuSUM_001667
pseudo: true
so part of: sequence
location: complement(11416..>12321)
location: region:11416-12321:-1
so has part: feature:11416-12321:-1:exon
subclass of: SO_0000010

position:11416:-1
position: 11416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12321:-1
position: 12321
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11416-12321:-1:exon

bpuSUM_RS08365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08365
old locus tag: bpuSUM_001667
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539713.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08365
subclass of: SO_0000673
so part of: bpuSUM_RS08365
location: complement(11416..>12321)
location: region:11416-12321:-1
so has part: feature:11416-12321:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11416-12321:-1:exon

bpuSUM_RS08370
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08370
old locus tag: bpuSUM_001668
so part of: sequence
location: complement(12591..13235)
location: region:12591-13235:-1
so has part: feature:12591-13235:-1:exon
subclass of: SO_0000010

position:12591:-1
position: 12591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13235:-1
position: 13235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12591-13235:-1:exon

bpuSUM_RS08370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08370
old locus tag: bpuSUM_001668
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633323.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MMKRITLCALLMTLFLLISCNTSGKDLKEDEVAKSDGTVIDLVKITKHITDTVAFAKSVKEVHSLVKSIDELAKAIGKKIHNDGTLTDDGSTDKNTSLMSGVYSIVLDIDKKSKALSVLDSFKEQILDEKVISFTTATKAFLDKLKSKHAELGVDQGAATKDNAQKAIDRTSQPNGDKGAEELDKLNTAIDALLTAAEAAVTSAINELTTSTKP
SIO_010081: bpuSUM_RS08370
subclass of: SO_0000673
so part of: bpuSUM_RS08370
location: complement(12591..13235)
location: region:12591-13235:-1
so has part: feature:12591-13235:-1:exon

WP_247067910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12591-13235:-1:exon

bpuSUM_RS08375
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08375
old locus tag: bpuSUM_001669
pseudo: true
so part of: sequence
location: complement(13364..14408)
location: region:13364-14408:-1
so has part: feature:13364-14408:-1:exon
subclass of: SO_0000010

position:13364:-1
position: 13364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14408:-1
position: 14408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13364-14408:-1:exon

bpuSUM_RS08375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08375
old locus tag: bpuSUM_001669
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08375
subclass of: SO_0000673
so part of: bpuSUM_RS08375
location: complement(13364..14408)
location: region:13364-14408:-1
so has part: feature:13364-14408:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13364-14408:-1:exon

bpuSUM_RS08380
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08380
so part of: sequence
location: complement(14631..15371)
location: region:14631-15371:-1
so has part: feature:14631-15371:-1:exon
subclass of: SO_0000010

position:14631:-1
position: 14631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15371:-1
position: 15371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14631-15371:-1:exon

bpuSUM_RS08380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGFAQPVITQQMVIAELTRAGINRDIAIDLSYRYYKNELTHKDIEYLETTFNLKLEKVEALLQAEIQRVETTLKSDIKDLDNKIDTVENNLNTKIDTKFNELDNKVDTVRNELKSDIKDLDTKIDYVRSELKSDIRDLDTKIDTVENNLNIKIDTKFNELDNKVDTVRNELKSDIKDLDNKIDTVENNLNTKIDTKFNELDNKIDVNKMELKSTLRLHGWMFGTIITLNIGIFLTLMTIVYSLLNK
SIO_010081: bpuSUM_RS08380
subclass of: SO_0000673
so part of: bpuSUM_RS08380
location: complement(14631..15371)
location: region:14631-15371:-1
so has part: feature:14631-15371:-1:exon

WP_247067883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14631-15371:-1:exon

bpuSUM_RS08385
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08385
old locus tag: bpuSUM_001672
so part of: sequence
location: complement(15666..16721)
location: region:15666-16721:-1
so has part: feature:15666-16721:-1:exon
subclass of: SO_0000010

position:15666:-1
position: 15666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16721:-1
position: 16721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16721:-1:exon

bpuSUM_RS08385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08385
old locus tag: bpuSUM_001672
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MMKRITLCALFLTLFLLLSCGSGSTSAEDPKITFLNSIANLGKGFLDVFTSLSDMVTGAFGINAETKKSDIGNYFTSIETTMTSVKKKLQDQVAKNGNYSKLKTVVDTFITNTLDKIAAGAKEAAKGATGDDKIGGATKDSGQDPAPADAESVNALVKGIKTIVDVVLKDKGNAGATKTGDDKKDIGKLFEKKDSGTETEAAKASASIGAVTGADILQAIARSGETADNSKNIEAATDAASIAAAKKEDDKKEIKNAAKKDAVIAAGIALRAMAKDGKFAAKSNEEKSANAVNGIAANAVGKTLSTLIIAIRNTVDSGLRTISNALATVTQEDKSAEATIPADATVNGQQQ
SIO_010081: bpuSUM_RS08385
subclass of: SO_0000673
so part of: bpuSUM_RS08385
location: complement(15666..16721)
location: region:15666-16721:-1
so has part: feature:15666-16721:-1:exon

WP_247067912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16721:-1:exon

bpuSUM_RS08390
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08390
old locus tag: bpuSUM_001673
so part of: sequence
location: complement(16842..17915)
location: region:16842-17915:-1
so has part: feature:16842-17915:-1:exon
subclass of: SO_0000010

position:16842:-1
position: 16842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17915:-1
position: 17915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16842-17915:-1:exon

bpuSUM_RS08390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08390
old locus tag: bpuSUM_001673
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKRITLSVLLMTLFLLLSCGSGSAKMEDPKTTFLDSLVKIGHGFYEIFGIFGNAIGDALGLTAVKSDDKKSKVGEHFDKIKKGLEDTNGKLKELSGEISEAKNANSSTIKSVKSVINSSSDVFEQLISALTKLADTAKEAGNIDIGDNANAVPSAADKDSVEAIIAGVKDIIGVAEKSGVKIESGDACIAVNAAATTDAPAVLGGANGNAAAGAGSKLADEVTKADPWAIIDKIKNATATTPAKLNGANNEAGALAASNDKADAAAGAKSNADLVAAVALKAMTKNGKFSAVDADKDIVKAAAASAVNKVLGILDFIIRKTVSSNLNKIKEAVKGIQYFETATQSTEASAAQPTATK
SIO_010081: bpuSUM_RS08390
subclass of: SO_0000673
so part of: bpuSUM_RS08390
location: complement(16842..17915)
location: region:16842-17915:-1
so has part: feature:16842-17915:-1:exon

WP_247067885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16842-17915:-1:exon

bpuSUM_RS08395
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08395
old locus tag: bpuSUM_001674
so part of: sequence
location: 17967..18116
location: region:17967-18116:1
so has part: feature:17967-18116:1:exon
subclass of: SO_0000010

position:17967:1
position: 17967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18116:1
position: 18116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17967-18116:1:exon

bpuSUM_RS08395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08395
old locus tag: bpuSUM_001674
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQSHILLPFLSTPSTIDLIPFTKLSTSFSLVISDTTLSNSSEPTSIKQF
SIO_010081: bpuSUM_RS08395
subclass of: SO_0000673
so part of: bpuSUM_RS08395
location: 17967..18116
location: region:17967-18116:1
so has part: feature:17967-18116:1:exon

WP_247067887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17967-18116:1:exon

bpuSUM_RS08400
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08400
old locus tag: bpuSUM_001675
so part of: sequence
location: 18317..19411
location: region:18317-19411:1
so has part: feature:18317-19411:1:exon
subclass of: SO_0000010

position:18317:1
position: 18317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19411:1
position: 19411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18317-19411:1:exon

bpuSUM_RS08400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08400
old locus tag: bpuSUM_001675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696756.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKDTKKNTNKHQHKLIVLISTLSYMNLKFKKYTQSDILYYFNNNMKKNDQKPIKLKTLQNYLYKLAKVLRVTINYHRHLGINMGTEIHYKLKYPKKECYRITNKHFRDKKEERHQKRVNAYLEKTCIKNSSVEKEECLYNNIYNKEKKNKEFIERLKVKKYAKKCCFKSNTFFSILNLNLEKNTKIEILKTLKRTENFFQNSIRKSINNTETISSKLESKRLKLNRILDETKISLEREGYNSKQLKTQIQNVYNKYKYKPHFIIENNKYNDLKTIIGKLKDSTKLITKETEKDIKNNIFSILLEQLRSKVDTSVLVPILKNYLNKQNKLEYNKVFSNYYYYKLLELIEGNKNYLKLVKSGENYN
SIO_010081: bpuSUM_RS08400
subclass of: SO_0000673
so part of: bpuSUM_RS08400
location: 18317..19411
location: region:18317-19411:1
so has part: feature:18317-19411:1:exon

WP_247067889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18317-19411:1:exon

bpuSUM_RS08405
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08405
old locus tag: bpuSUM_001676
so part of: sequence
location: 19421..19981
location: region:19421-19981:1
so has part: feature:19421-19981:1:exon
subclass of: SO_0000010

position:19421:1
position: 19421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19981:1
position: 19981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19421-19981:1:exon

bpuSUM_RS08405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08405
old locus tag: bpuSUM_001676
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MESILERLKKKKLEINDKGNESIFIKMEKSNNRTIYHTRIIMDFYTFGVNRNQKNKFFIAFRSLFNIQKIHEFNLFPLKRDDKFLGIFYGYRKPLQGIITEYEENGVMKASTLSKVYYIEFRFKKGSVFCYIKGIARLIKKEKSETQYSQFLLELITNLEKQVYEFYGKNLSNGGIINKWIKKNLQ
SIO_010081: bpuSUM_RS08405
subclass of: SO_0000673
so part of: bpuSUM_RS08405
location: 19421..19981
location: region:19421-19981:1
so has part: feature:19421-19981:1:exon

WP_247067891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19421-19981:1:exon

bpuSUM_RS08410
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08410
old locus tag: bpuSUM_001677
so part of: sequence
location: 19957..20775
location: region:19957-20775:1
so has part: feature:19957-20775:1:exon
subclass of: SO_0000010

position:19957:1
position: 19957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20775:1
position: 20775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19957-20775:1:exon

bpuSUM_RS08410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08410
old locus tag: bpuSUM_001677
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883757.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDKKKPTIITIASIKGGVGKSTSALIFATLLAQKHKVLLIDIDTQASVTSYFYRKIKELDTDLVNKNIYEVLIDKISMNKSIISIDSNLDLIPSYVTLHKVNRVAYKYMLKEFKLKIEIGRLENNYDYVILDTNPSLDFTLTNALVCSDYVIVPMTAEKWAVESFEVLDFFIKELEIFLPIYILITRFKKNNTHKCLLDILKSKNNFLGTISEREDLNKKIADNCKFDLCKDYMKEYNKILSTFLYHIDNNLYAKKNNKINFSNRWKDYKRN
SIO_010081: bpuSUM_RS08410
subclass of: SO_0000673
so part of: bpuSUM_RS08410
location: 19957..20775
location: region:19957-20775:1
so has part: feature:19957-20775:1:exon

WP_247067893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19957-20775:1:exon

bpuSUM_RS08415
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08415
old locus tag: bpuSUM_001678
so part of: sequence
location: 20780..21346
location: region:20780-21346:1
so has part: feature:20780-21346:1:exon
subclass of: SO_0000010

position:20780:1
position: 20780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21346:1
position: 21346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20780-21346:1:exon

bpuSUM_RS08415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08415
old locus tag: bpuSUM_001678
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MEINRRIINNDKNIILNHSQILSLEEKRKERYNELKLKLKSNFKESICNKLEAMKILKEIKDNDYYKLDGYKKFSEFLTSYNVAKSQAYNYLKIATAIEEGILEEQYVLENGFREVLSLIKDKEGKNLKKSRLNSIRPLRFQLKSQDSYDFYKSDTKFTSYFLDRIFEDEKEFLQKFMKEYKNLKNNK
SIO_010081: bpuSUM_RS08415
subclass of: SO_0000673
so part of: bpuSUM_RS08415
location: 20780..21346
location: region:20780-21346:1
so has part: feature:20780-21346:1:exon

WP_247067896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20780-21346:1:exon

bpuSUM_RS08420
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08420
so part of: sequence
location: 21392..21505
location: region:21392-21505:1
so has part: feature:21392-21505:1:exon
subclass of: SO_0000010

position:21392:1
position: 21392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21505:1
position: 21505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21392-21505:1:exon

bpuSUM_RS08420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08420
inference: COORDINATES: protein motif:HMM:NF040500.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTEFLNKRFTEELIGFISFHNDNFDFEIILEKMSPL
SIO_010081: bpuSUM_RS08420
subclass of: SO_0000673
so part of: bpuSUM_RS08420
location: 21392..21505
location: region:21392-21505:1
so has part: feature:21392-21505:1:exon

WP_247067898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21392-21505:1:exon

bpuSUM_RS08425
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08425
so part of: sequence
location: complement(23331..23579)
location: region:23331-23579:-1
so has part: feature:23331-23579:-1:exon
subclass of: SO_0000010

position:23331:-1
position: 23331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23579:-1
position: 23579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23331-23579:-1:exon

bpuSUM_RS08425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08425
inference: COORDINATES: protein motif:HMM:NF015275.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MYKLYYLDQWKHTKTKRVSRRFYHYSYNLLEDKKQKHEDNKDFNTYISNAIDCKANNQINQCNNDNKYGNDTNEIEQFLEVF
SIO_010081: bpuSUM_RS08425
subclass of: SO_0000673
so part of: bpuSUM_RS08425
location: complement(23331..23579)
location: region:23331-23579:-1
so has part: feature:23331-23579:-1:exon

WP_247067900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23331-23579:-1:exon

bpuSUM_RS08430
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08430
so part of: sequence
location: complement(23489..23740)
location: region:23489-23740:-1
so has part: feature:23489-23740:-1:exon
subclass of: SO_0000010

position:23489:-1
position: 23489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23740:-1
position: 23740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23489-23740:-1:exon

bpuSUM_RS08430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08430
inference: COORDINATES: protein motif:HMM:NF015275.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MDNLQKKTDENTQKVITLTADEKKKFNSLKHALNRVIEKLQDQIDGCKDVSKSKCTNFITWINGNIQKQKELAEDFTTIVTIS
SIO_010081: bpuSUM_RS08430
subclass of: SO_0000673
so part of: bpuSUM_RS08430
location: complement(23489..23740)
location: region:23489-23740:-1
so has part: feature:23489-23740:-1:exon

WP_247067902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23489-23740:-1:exon

bpuSUM_RS08435
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08435
so part of: sequence
location: 24453..25118
location: region:24453-25118:1
so has part: feature:24453-25118:1:exon
subclass of: SO_0000010

position:24453:1
position: 24453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25118:1
position: 25118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24453-25118:1:exon

bpuSUM_RS08435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS08435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLPQSVITQQMVINELTKAGINRDIAIDLSYRYYRNELTYKDIEFLKENFDIKLEKVEALLQSEIKSVKTELDNKIDTVENNLNTKIDTKFNELDNKIDAVRSELKSDIKDLDNKIDTKFNELDNKIDTVENNLNTKIDTTFNELDNKIDTVRSELKSDIKDLDNKIDTKFNELDNKIDVNTMELKSTLRLHGWMFGTIITLNIGIFLTLMSIVYSLLNK
SIO_010081: bpuSUM_RS08435
subclass of: SO_0000673
so part of: bpuSUM_RS08435
location: 24453..25118
location: region:24453-25118:1
so has part: feature:24453-25118:1:exon

WP_247067904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24453-25118:1:exon

bpuSUM_RS08440
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08440
old locus tag: bpuSUM_001682
pseudo: true
so part of: sequence
location: 25380..26343
location: region:25380-26343:1
so has part: feature:25380-26343:1:exon
subclass of: SO_0000010

position:25380:1
position: 25380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26343:1
position: 26343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25380-26343:1:exon

bpuSUM_RS08440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08440
old locus tag: bpuSUM_001682
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539551.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08440
subclass of: SO_0000673
so part of: bpuSUM_RS08440
location: 25380..26343
location: region:25380-26343:1
so has part: feature:25380-26343:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25380-26343:1:exon

bpuSUM_RS08445
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08445
old locus tag: bpuSUM_001683
so part of: sequence
location: 26470..27102
location: region:26470-27102:1
so has part: feature:26470-27102:1:exon
subclass of: SO_0000010

position:26470:1
position: 26470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27102:1
position: 27102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26470-27102:1:exon

bpuSUM_RS08445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08445
old locus tag: bpuSUM_001683
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633346.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MMKRITLCALFLTLFLLISCNTSGSATKDGQAAKSDGTIIDLVTITNNIKDSVAFAKDVKEIHTLVKSVDEFVKGIGKKLKKDDGTLEDEKNDNNGQLVVGVYSLVSGIDTKLASLEKKVGLSSDLKAKIAGVKAKIKPFLDKLKDDDLCKKDVTDAHIKNAIDKNDNTGGKGKAELIALNTEIDELLTAAEAEVKSAIKELTTPVKPSN
SIO_010081: bpuSUM_RS08445
subclass of: SO_0000673
so part of: bpuSUM_RS08445
location: 26470..27102
location: region:26470-27102:1
so has part: feature:26470-27102:1:exon

WP_247067920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26470-27102:1:exon

bpuSUM_RS08450
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08450
old locus tag: bpuSUM_001684
pseudo: true
so part of: sequence
location: <27308..28279
location: region:27308-28279:1
so has part: feature:27308-28279:1:exon
subclass of: SO_0000010

position:27308:1
position: 27308
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:28279:1
position: 28279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27308-28279:1:exon

bpuSUM_RS08450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08450
old locus tag: bpuSUM_001684
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539783.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08450
subclass of: SO_0000673
so part of: bpuSUM_RS08450
location: <27308..28279
location: region:27308-28279:1
so has part: feature:27308-28279:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27308-28279:1:exon

bpuSUM_RS08455
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08455
old locus tag: bpuSUM_001685
pseudo: true
so part of: sequence
location: <28408..29372
location: region:28408-29372:1
so has part: feature:28408-29372:1:exon
subclass of: SO_0000010

position:28408:1
position: 28408
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:29372:1
position: 29372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28408-29372:1:exon

bpuSUM_RS08455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08455
old locus tag: bpuSUM_001685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683299.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08455
subclass of: SO_0000673
so part of: bpuSUM_RS08455
location: <28408..29372
location: region:28408-29372:1
so has part: feature:28408-29372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28408-29372:1:exon

bpuSUM_RS08460
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08460
old locus tag: bpuSUM_001686
so part of: sequence
location: 29477..30556
location: region:29477-30556:1
so has part: feature:29477-30556:1:exon
subclass of: SO_0000010

position:29477:1
position: 29477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30556:1
position: 30556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29477-30556:1:exon

bpuSUM_RS08460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08460
old locus tag: bpuSUM_001686
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633331.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MRRHVIMKRITLCALLITLFLLLSCGSGHQSANGGGAATGGSSLSSVLMDIGRSAENAFYSFLELLSGTLGFTAKSTTKKSDVGGYFNSLGAKLGQASEELEQVAVKATAGIDTSDASKNPIRVAIDSAKATLNTLKTHLDSLKDIGDAKVVGDAASDAAGTAADETELKKAYNSLKGIVETATTEGISKPKVGATTLKVDNADNKDGAKILATDNKPAATDAAKAAAILATVSGEEILDSIVKSGESDAALAAAANGSTTAISFAKGGSAANLAGADTAKAAAVAGGVALRSLVKTGKLASAAAGQGGQGEVQKIGVTAANKLLGAVEDVIKKAVKNVLEKAKEKIDEARAPKPAGQK
SIO_010081: bpuSUM_RS08460
subclass of: SO_0000673
so part of: bpuSUM_RS08460
location: 29477..30556
location: region:29477-30556:1
so has part: feature:29477-30556:1:exon

WP_247067922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29477-30556:1:exon

bpuSUM_RS08465
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08465
old locus tag: bpuSUM_001687
pseudo: true
so part of: sequence
location: <30658..31649
location: region:30658-31649:1
so has part: feature:30658-31649:1:exon
subclass of: SO_0000010

position:30658:1
position: 30658
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:31649:1
position: 31649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30658-31649:1:exon

bpuSUM_RS08465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08465
old locus tag: bpuSUM_001687
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633324.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS08465
subclass of: SO_0000673
so part of: bpuSUM_RS08465
location: <30658..31649
location: region:30658-31649:1
so has part: feature:30658-31649:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30658-31649:1:exon

bpuSUM_RS08470
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08470
old locus tag: bpuSUM_001688
so part of: sequence
location: 32196..33071
location: region:32196-33071:1
so has part: feature:32196-33071:1:exon
subclass of: SO_0000010

position:32196:1
position: 32196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33071:1
position: 33071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32196-33071:1:exon

bpuSUM_RS08470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08470
old locus tag: bpuSUM_001688
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRSILSVCMLTLLCLLSCDINVLNDLLDKAREKFLDESKDNKDLNAREGNQEIEEEQADIVVRIEEGVEINKNLQREGIELSLKEERLEEVVEQQFVSQSNALTKEQENELYSQEIKANDIRSKVNSKLATIEAMHREVSASVLKLESMKTDIMKAKSDLDRARSSSRNGIDQNVKIKLDQAIENVRSSSNIAMILYKDAVNGLEHARSSVEHARGLTESALDELRYLRSSNYYYVIRYYYLSDAKTSLNRAEDMFAKVESEMDNLRNAMKQAEEAFVALKSAHQALGLK
SIO_010081: bpuSUM_RS08470
subclass of: SO_0000673
so part of: bpuSUM_RS08470
location: 32196..33071
location: region:32196-33071:1
so has part: feature:32196-33071:1:exon

WP_247067906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32196-33071:1:exon

bpuSUM_RS08475
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS08475
old locus tag: bpuSUM_001689
so part of: sequence
location: 33333..34502
location: region:33333-34502:1
so has part: feature:33333-34502:1:exon
subclass of: SO_0000010

position:33333:1
position: 33333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34502:1
position: 34502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33333-34502:1:exon

bpuSUM_RS08475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS08475
old locus tag: bpuSUM_001689
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539667.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ferrous iron transporter A
translation: MKFKNKYVALGLLLSFISCDLFMNDEMKEKSLDLVDKVTSILDASEKSIGKSTKKRRKVSKKRLSASRVKRSGNNSNLVQNVMSDDMTSDLQNDVHQDNVVKKSTLEDSLEINDGLINEEIPRVKLSSKKSELREKGIQNQQNAENKDLITTGVSTVYGSSYDHAKMVYGSSTFLSSESGELKETIERNEIDFTIDSDLRPEDIAGSNTVSYTDEIEEEDYDQYYLEDDEDKYDEEETRLDNRYKSYLEGVRYNVGSAIGIIDKVYNNYRLFEEQRTRMYSTRLDADTKAQAKKEAEKFTKQKLEKDLNALLNYIQVSAKTATNFVYIMEIHAKSRLDKLATEVKSLISKVQGQSNPYEAYKAIVSPILQMKDSLKVVQGAVDKDGPWY
SIO_010081: bpuSUM_RS08475
subclass of: SO_0000673
so part of: bpuSUM_RS08475
location: 33333..34502
location: region:33333-34502:1
so has part: feature:33333-34502:1:exon

WP_247067908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33333-34502:1:exon