Borrelia puertoricensis strain SUM plasmid lp25, complete sequence.
type: Entry
definition: Borrelia puertoricensis strain SUM plasmid lp25, complete sequence.
sequence version: NZ_CP075392.1
sequence date: 2022-05-23
sequence: sequence
division: CON
label: NZ_CP075392.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN19000909
keyword: RefSeq
source: Borrelia puertoricensis
organism: Borrelia puertoricensis
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075392.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1138.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/23/2022 17:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,976\nCDSs (total) :: 1,938\nGenes (coding) :: 1,830\nCDSs (with protein) :: 1,830\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 72 of 108\nPseudo Genes (incomplete) :: 37 of 108\nPseudo Genes (internal stop) :: 24 of 108\nPseudo Genes (multiple problems) :: 23 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24508
topology: linear
so has quality: SO_0000987
location: 1..24508
location: region:1-24508:1
RO_0002162: 2756107

NZ_CP075392
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN19000909
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (17-MAY-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24508:1
position: 24508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24508:1:source
so part of: sequence
organism: Borrelia puertoricensis
mol type: genomic DNA
strain: SUM
isolation source: tick
host: Alectorobius puertoricensis
type material: type strain of Borrelia puertoricensis
plasmid: lp25
country: Panama
collection date: 2019-01-01

2756107
type: Taxonomy
SIO_000068: taxonomy

bpuSUM_RS07865
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07865
old locus tag: bpuSUM_001568
so part of: sequence
location: 311..658
location: region:311-658:1
so has part: feature:311-658:1:exon
subclass of: SO_0000010

position:311:1
position: 311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658:1
position: 658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311-658:1:exon

bpuSUM_RS07865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07865
old locus tag: bpuSUM_001568
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLQIIHLFVIGLLSLSFTSCNLFFNDEIKGKYTTLFNKFSNKEAISFNLLEDDFEDESNYINQGNLINSNNSDYDKITTSETQKINPKDNNPNKKIKEEIDKKNKKNPKKIKTN
SIO_010081: bpuSUM_RS07865
subclass of: SO_0000673
so part of: bpuSUM_RS07865
location: 311..658
location: region:311-658:1
so has part: feature:311-658:1:exon

WP_247067681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311-658:1:exon

bpuSUM_RS07870
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07870
old locus tag: bpuSUM_001569
so part of: sequence
location: 772..1131
location: region:772-1131:1
so has part: feature:772-1131:1:exon
subclass of: SO_0000010

position:772:1
position: 772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1131:1
position: 1131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772-1131:1:exon

bpuSUM_RS07870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07870
old locus tag: bpuSUM_001569
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQPILDSIMQKMVQAEKITHTQKQLINSGYDFNTPNYKHLFITKMNTNDNDVTKNLMEALQLLGNEDITQPMSIKKIYTEANNKHTKFIRLLSKEKKDYGAPRSATIAYSKLIQLLATQ
SIO_010081: bpuSUM_RS07870
subclass of: SO_0000673
so part of: bpuSUM_RS07870
location: 772..1131
location: region:772-1131:1
so has part: feature:772-1131:1:exon

WP_247067683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:772-1131:1:exon

bpuSUM_RS07875
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07875
old locus tag: bpuSUM_001570
so part of: sequence
location: complement(2770..3963)
location: region:2770-3963:-1
so has part: feature:2770-3963:-1:exon
subclass of: SO_0000010

position:2770:-1
position: 2770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3963:-1
position: 3963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2770-3963:-1:exon

bpuSUM_RS07875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07875
old locus tag: bpuSUM_001570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539667.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ferrous iron transporter A
translation: MKSKNKYLALGLLFGFIGCDLFMNDEMKEKSLGLFDKVTSILDASEKSIGKSTKKRRKISKKRLSARRVKRSDNNSNLVQNVMSDDMTSDLQDDIHQDNVVKKSTLEDSLEINDSLFNEESPRVELSSKKSELREGGIQIRQNVENKDLITTGVSTIYGSSYDHAKMVYGSSTFLSSESGELKETIERNEIDFTIDSDLRPEDIAGSNTISYTDEIEEEDYDQYYLEDDEEDQYDEEDQYDEEDIRLDNRYKSYLEGVRYNVGSAIGIIDKVYNNYKLFEEQRTRMYSTRLDADTKAQAKKEAEKFTKEELEKDLNALLNYIQVSAKTATNFVYIMEIHAKNRLDKLETEVKSLISKVQGQSDPYEGYKTIVRNKFLQMKDSLEVVQGSVDKDGPYY
SIO_010081: bpuSUM_RS07875
subclass of: SO_0000673
so part of: bpuSUM_RS07875
location: complement(2770..3963)
location: region:2770-3963:-1
so has part: feature:2770-3963:-1:exon

WP_247067685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2770-3963:-1:exon

bpuSUM_RS07880
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07880
old locus tag: bpuSUM_001571
so part of: sequence
location: complement(4224..5099)
location: region:4224-5099:-1
so has part: feature:4224-5099:-1:exon
subclass of: SO_0000010

position:4224:-1
position: 4224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5099:-1
position: 5099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4224-5099:-1:exon

bpuSUM_RS07880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07880
old locus tag: bpuSUM_001571
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRSILSVCMLALLCFVSCDINALNELLDKSRGKVLEKNKKLEDLKSREGNQEIKEEQVDIVVSIEEGVKINKNLQREGIELGLKDGRPEEVAEQQFVSQSNALTKEQENELVSYDSEANEIKSKVDVLLVSFDKIYGELNTSLSELENMETDIVNAKFAFDKVRTSGSDIEQNVKINLHQAIDKVRNSRNIAIALYKDKLNTLGLSKSSAESANSSIESVLRHSDQIRLDGYYNVYLLTHCMSGAKTSFNSAENMFKQVESEMDKLRNAMKEAEEDFADLKKAHQALGVR
SIO_010081: bpuSUM_RS07880
subclass of: SO_0000673
so part of: bpuSUM_RS07880
location: complement(4224..5099)
location: region:4224-5099:-1
so has part: feature:4224-5099:-1:exon

WP_247067687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4224-5099:-1:exon

bpuSUM_RS07885
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07885
so part of: sequence
location: complement(6067..6492)
location: region:6067-6492:-1
so has part: feature:6067-6492:-1:exon
subclass of: SO_0000010

position:6067:-1
position: 6067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6492:-1
position: 6492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6067-6492:-1:exon

bpuSUM_RS07885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07885
inference: COORDINATES: protein motif:HMM:NF033721.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MEDALKLKSEHELLESSFYETCSEIQNKIGIYPRDNGTKRQKLIQLRNQLNEQKSQIDMFRIQVDSGLDERRSAEFFVNKSQETLKEAITERLRNKKRRIYSSRRGNRDLLALKSRSEAENVLRLLESSSGKIGEAMGRKR
SIO_010081: bpuSUM_RS07885
subclass of: SO_0000673
so part of: bpuSUM_RS07885
location: complement(6067..6492)
location: region:6067-6492:-1
so has part: feature:6067-6492:-1:exon

WP_247067733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6067-6492:-1:exon

bpuSUM_RS07890
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07890
so part of: sequence
location: complement(6553..6891)
location: region:6553-6891:-1
so has part: feature:6553-6891:-1:exon
subclass of: SO_0000010

position:6553:-1
position: 6553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6891:-1
position: 6891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6553-6891:-1:exon

bpuSUM_RS07890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRNILAVCMLALLCLLSCDVNVLNDLLNEVRKKVLDESKDNKDLKHEQKNQEQKEVVIDDFEKGVEMQQDMEVKPVNLGFAVSKQEYPYYVQEEVIKIEEKDLIPSTNEEK
SIO_010081: bpuSUM_RS07890
subclass of: SO_0000673
so part of: bpuSUM_RS07890
location: complement(6553..6891)
location: region:6553-6891:-1
so has part: feature:6553-6891:-1:exon

WP_247067689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6553-6891:-1:exon

bpuSUM_RS07895
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07895
old locus tag: bpuSUM_001573
pseudo: true
so part of: sequence
location: complement(7263..>8132)
location: region:7263-8132:-1
so has part: feature:7263-8132:-1:exon
subclass of: SO_0000010

position:7263:-1
position: 7263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8132:-1
position: 8132
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7263-8132:-1:exon

bpuSUM_RS07895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07895
old locus tag: bpuSUM_001573
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633351.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS07895
subclass of: SO_0000673
so part of: bpuSUM_RS07895
location: complement(7263..>8132)
location: region:7263-8132:-1
so has part: feature:7263-8132:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7263-8132:-1:exon

bpuSUM_RS07900
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07900
old locus tag: bpuSUM_001574
so part of: sequence
location: complement(8228..9301)
location: region:8228-9301:-1
so has part: feature:8228-9301:-1:exon
subclass of: SO_0000010

position:8228:-1
position: 8228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9301:-1
position: 9301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8228-9301:-1:exon

bpuSUM_RS07900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07900
old locus tag: bpuSUM_001574
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633313.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MRRHVIMKRITLCALLMTLFLLLSCGSGQQSLDAANGGGAATGGSSLSSVLMEVGRSAENAFYSFLELLSGTLGFTAKSTTKKSDVGSYFSSLGTRLGDASDELEQVAKKSEGEGAKDGPIAVAIRSAVDAAKTTLSTLKTHLESLKDIGDDKVVGWAENDQQGIKPADDGLNKFFNALQLIVKAATDAGVLAPKAGNTTLTVNGIDNKDGAKILAIDKPGAAVGDKATLIVSAVSGEEMLASIVASKDSDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVAGGIALRSLVKDGKLASHNDNSEKAVQAAGVSAANKLLVAVEDIIKKTVKNVLRTAKEKIDKAREPKPAE
SIO_010081: bpuSUM_RS07900
subclass of: SO_0000673
so part of: bpuSUM_RS07900
location: complement(8228..9301)
location: region:8228-9301:-1
so has part: feature:8228-9301:-1:exon

WP_247067735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8228-9301:-1:exon

bpuSUM_RS07905
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07905
so part of: sequence
location: complement(9504..10091)
location: region:9504-10091:-1
so has part: feature:9504-10091:-1:exon
subclass of: SO_0000010

position:9504:-1
position: 9504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10091:-1
position: 10091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9504-10091:-1:exon

bpuSUM_RS07905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539611.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MQDSSLHSVESTQIFNGHITEEIIYQEFVKMGMQDFIANDLSKRYYRNELTYRDIEYLESNFNLKLEMLERSLKSEIISVKTELDNKIDIIRNELKSDIKDLDNKIDIVESNLNVKIDTKFNELDNKIDNVRNEVSLVRKDMEINRMELDNKLDKTASEFKSTSRLHNWMFGTLITLNIGIFLTLMSIVYSLLSK
SIO_010081: bpuSUM_RS07905
subclass of: SO_0000673
so part of: bpuSUM_RS07905
location: complement(9504..10091)
location: region:9504-10091:-1
so has part: feature:9504-10091:-1:exon

WP_247067691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9504-10091:-1:exon

bpuSUM_RS07910
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07910
old locus tag: bpuSUM_001577
so part of: sequence
location: 10343..10762
location: region:10343-10762:1
so has part: feature:10343-10762:1:exon
subclass of: SO_0000010

position:10343:1
position: 10343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10762:1
position: 10762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10343-10762:1:exon

bpuSUM_RS07910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07910
old locus tag: bpuSUM_001577
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017689.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MNKINFILVLLLLISSCEYEHGNATPKSRVKRNLEEQEEAQKTPEEMLKEKLNDTEKSNLNFLKEALGSESDFNKFLNHDESKIKEALDHIHTELAKCTGDNASQQKETFKQVVKGALNGDENLDNFKNQASSTCEAGS
SIO_010081: bpuSUM_RS07910
subclass of: SO_0000673
so part of: bpuSUM_RS07910
location: 10343..10762
location: region:10343-10762:1
so has part: feature:10343-10762:1:exon

WP_247067693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10343-10762:1:exon

bpuSUM_RS07915
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07915
old locus tag: bpuSUM_001578
so part of: sequence
location: complement(11174..11464)
location: region:11174-11464:-1
so has part: feature:11174-11464:-1:exon
subclass of: SO_0000010

position:11174:-1
position: 11174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11464:-1
position: 11464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11174-11464:-1:exon

bpuSUM_RS07915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07915
old locus tag: bpuSUM_001578
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHLGNIEVLHKNKYANGVDKYNYYKKIKDCEILVGLIIGGWFVGITGESQLLESKVSDNFYLKSAAFEYNRLSNFLEDKYFFKYYVQVQMQLYVQV
SIO_010081: bpuSUM_RS07915
subclass of: SO_0000673
so part of: bpuSUM_RS07915
location: complement(11174..11464)
location: region:11174-11464:-1
so has part: feature:11174-11464:-1:exon

WP_247067695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11174-11464:-1:exon

bpuSUM_RS07920
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07920
old locus tag: bpuSUM_001579
so part of: sequence
location: complement(11614..11802)
location: region:11614-11802:-1
so has part: feature:11614-11802:-1:exon
subclass of: SO_0000010

position:11614:-1
position: 11614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11802:-1
position: 11802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11614-11802:-1:exon

bpuSUM_RS07920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07920
old locus tag: bpuSUM_001579
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQQFSLYRQMVFKGSESFACKSQEDLKDKQKQLSKINKVGRKLPKIGKDECFKFNIKVDFSM
SIO_010081: bpuSUM_RS07920
subclass of: SO_0000673
so part of: bpuSUM_RS07920
location: complement(11614..11802)
location: region:11614-11802:-1
so has part: feature:11614-11802:-1:exon

WP_247067697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11614-11802:-1:exon

bpuSUM_RS07925
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07925
old locus tag: bpuSUM_001580
so part of: sequence
location: 11969..13066
location: region:11969-13066:1
so has part: feature:11969-13066:1:exon
subclass of: SO_0000010

position:11969:1
position: 11969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13066:1
position: 13066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11969-13066:1:exon

bpuSUM_RS07925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07925
old locus tag: bpuSUM_001580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539223.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MSSTKKPINKHQHKLIVLVSTLDYVNLNLNQYTQSNILYYFNNNMKKNDQKPIKLKTLQSYLYKLEKVFKVTINYYKHLGVNMGTEIHYKLKYSKKECYRIINKHFRDKKEERHKNRVSVYLEKTCTKNSSVEKWECSNNTYNNKEEDKNDVKSIEKLQAKKYAKKCNFKSNAFLSILNLEANKDFKIQLLKAIKIAENSGYKRINNIKPNHSKLKSKQKELSKILDEIKAGLENKGYDTKQLETQIQNVYEQYKNKPHFIIEKNKYNDLKKIIGKLKKTVEFANKNTQKNERDIRDNVFSILLDQLRYKIDVSVLIPILKNYLNRQNKLEYDKVFSNHYYYELLELLEDNKNYLQLEESKKITS
SIO_010081: bpuSUM_RS07925
subclass of: SO_0000673
so part of: bpuSUM_RS07925
location: 11969..13066
location: region:11969-13066:1
so has part: feature:11969-13066:1:exon

WP_247067705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11969-13066:1:exon

bpuSUM_RS07930
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07930
old locus tag: bpuSUM_001581
so part of: sequence
location: 13076..13639
location: region:13076-13639:1
so has part: feature:13076-13639:1:exon
subclass of: SO_0000010

position:13076:1
position: 13076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13639:1
position: 13639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13076-13639:1:exon

bpuSUM_RS07930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07930
old locus tag: bpuSUM_001581
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MQSVLERLKEKKLEIKDKVKSRGLFIKIEKIDNKTIYHTKMMNDLYTFGVHRRQNNKFFIAFRGLFNQAKITPFNLFSIKGDDKFLGIYYGYRKPVQNIITKYEENGFMRSYTFSKVYYIEFRFKKGSVFCYIKGMSRLIKQKKSETQYSKFLLELIINLEEQVYDFYSKKLPNGGLITKWIEKNLK
SIO_010081: bpuSUM_RS07930
subclass of: SO_0000673
so part of: bpuSUM_RS07930
location: 13076..13639
location: region:13076-13639:1
so has part: feature:13076-13639:1:exon

WP_247067707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13076-13639:1:exon

bpuSUM_RS07935
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07935
old locus tag: bpuSUM_001582
so part of: sequence
location: 13615..14445
location: region:13615-14445:1
so has part: feature:13615-14445:1:exon
subclass of: SO_0000010

position:13615:1
position: 13615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14445:1
position: 14445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13615-14445:1:exon

bpuSUM_RS07935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07935
old locus tag: bpuSUM_001582
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539221.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKKPKVITIASIKGGVGKSTSAIILATLLSQKHKVLLIDMDTQASVTSYFFNEIKEKNINLMEKNICEVLKGDLEIANAIFNIKSSLDLLPSYLTLHSLNEDFYCANRHKSIDLKLKVELRRLKVKYDYIVIDTNPSLDFTLKCSLNSTDYIIVPMTAEKWTIESYELLEFFIKKLERLIPIFFIITRFKKNNTHKKLLKIIQEKDTFLGVVSERENLNKRIASNSNFDLKSDYIIEYDQILSNLLYRISLNNDTIGVSSISYPALENCKNSTE
SIO_010081: bpuSUM_RS07935
subclass of: SO_0000673
so part of: bpuSUM_RS07935
location: 13615..14445
location: region:13615-14445:1
so has part: feature:13615-14445:1:exon

WP_247067709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13615-14445:1:exon

bpuSUM_RS07940
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07940
old locus tag: bpuSUM_001583
so part of: sequence
location: 14455..15036
location: region:14455-15036:1
so has part: feature:14455-15036:1:exon
subclass of: SO_0000010

position:14455:1
position: 14455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15036:1
position: 15036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14455-15036:1:exon

bpuSUM_RS07940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07940
old locus tag: bpuSUM_001583
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539220.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNKKNNDEIIINARNLNSDKNSILLTNDDINVSDDQKRFKLLKSKLKDNIKDDIYNKIEAMHILREIKEKEYYKLDGYKSFSQFIKDYKLAKSQAYSYLRIASAIQDGILKEEYLVENGFRQSLSFLAEKESTSIKKSRVNPIKPLRFQLKNQESYDFYKQNAKFTNFLMDELFKDKKDLLEEFMKKFKSLKG
SIO_010081: bpuSUM_RS07940
subclass of: SO_0000673
so part of: bpuSUM_RS07940
location: 14455..15036
location: region:14455-15036:1
so has part: feature:14455-15036:1:exon

WP_247067711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14455-15036:1:exon

bpuSUM_RS07945
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07945
pseudo: true
so part of: sequence
location: 15052..>15245
location: region:15052-15245:1
so has part: feature:15052-15245:1:exon
subclass of: SO_0000010

position:15052:1
position: 15052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15245:1
position: 15245
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15052-15245:1:exon

bpuSUM_RS07945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258659.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Bdr family repetitive protein
SIO_010081: bpuSUM_RS07945
subclass of: SO_0000673
so part of: bpuSUM_RS07945
location: 15052..>15245
location: region:15052-15245:1
so has part: feature:15052-15245:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15052-15245:1:exon

bpuSUM_RS07950
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07950
old locus tag: bpuSUM_001584
so part of: sequence
location: 15787..16032
location: region:15787-16032:1
so has part: feature:15787-16032:1:exon
subclass of: SO_0000010

position:15787:1
position: 15787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16032:1
position: 16032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15787-16032:1:exon

bpuSUM_RS07950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07950
old locus tag: bpuSUM_001584
inference: COORDINATES: protein motif:HMM:NF016302.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ERF family protein
translation: MRINLGIVAKKLNGYGYKYQNFNEVIREIKNVIKSNNLDIDFLQCPTFKVAGNNTINVITTTFYSPKSVYRESFDILVYRE
SIO_010081: bpuSUM_RS07950
subclass of: SO_0000673
so part of: bpuSUM_RS07950
location: 15787..16032
location: region:15787-16032:1
so has part: feature:15787-16032:1:exon

WP_247067719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15787-16032:1:exon

bpuSUM_RS07955
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07955
old locus tag: bpuSUM_001585
so part of: sequence
location: 16089..16451
location: region:16089-16451:1
so has part: feature:16089-16451:1:exon
subclass of: SO_0000010

position:16089:1
position: 16089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16451:1
position: 16451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16089-16451:1:exon

bpuSUM_RS07955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07955
old locus tag: bpuSUM_001585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTYSRRYAFVGSLSIESEFDTDASSLEHIQEANDELASIVKCSIYKFSKGKSFTVETVTKSTIEQQSSSHTSITKFESLSKRIPAKYYYYKKFIQASKKMHAVLYETLFDSLEMIDKFLI
SIO_010081: bpuSUM_RS07955
subclass of: SO_0000673
so part of: bpuSUM_RS07955
location: 16089..16451
location: region:16089-16451:1
so has part: feature:16089-16451:1:exon

WP_247067721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16089-16451:1:exon

bpuSUM_RS07960
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07960
old locus tag: bpuSUM_001586
pseudo: true
so part of: sequence
location: <16602..17549
location: region:16602-17549:1
so has part: feature:16602-17549:1:exon
subclass of: SO_0000010

position:16602:1
position: 16602
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17549:1
position: 17549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16602-17549:1:exon

bpuSUM_RS07960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07960
old locus tag: bpuSUM_001586
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bpuSUM_RS07960
subclass of: SO_0000673
so part of: bpuSUM_RS07960
location: <16602..17549
location: region:16602-17549:1
so has part: feature:16602-17549:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16602-17549:1:exon

bpuSUM_RS07965
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07965
so part of: sequence
location: 17784..18395
location: region:17784-18395:1
so has part: feature:17784-18395:1:exon
subclass of: SO_0000010

position:17784:1
position: 17784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18395:1
position: 18395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17784-18395:1:exon

bpuSUM_RS07965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: bdr
locus tag: bpuSUM_RS07965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MQDSSLHSVESTQIFNGHITEEIIYQEFVKMGMQDFIANDLSKRYYRNELTYKDIEYLESNFNLKFEMLERSLKSEIIFVKTELDNKIDSVENNLNVKIDTRFNELDNKIDYVESNLNVKIDTKFNDLDNKIDIVKNELKSEISLVRKDMEINKMELNSKLDKTTSEFKSTSRLHNWMFGTLITLNIGIFLTLISIVYSLLNK
SIO_010081: bpuSUM_RS07965
subclass of: SO_0000673
so part of: bpuSUM_RS07965
location: 17784..18395
location: region:17784-18395:1
so has part: feature:17784-18395:1:exon

WP_247067723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17784-18395:1:exon

bpuSUM_RS07970
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07970
old locus tag: bpuSUM_001588
so part of: sequence
location: 18611..19240
location: region:18611-19240:1
so has part: feature:18611-19240:1:exon
subclass of: SO_0000010

position:18611:1
position: 18611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19240:1
position: 19240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18611-19240:1:exon

bpuSUM_RS07970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07970
old locus tag: bpuSUM_001588
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633323.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MMKRITLCALFLTLFLLISCNTSGKDLKDDEVAKSDGTVIDLAKITKNITDSVAFAKDVKEIHSLVKSIDELAKAIGKKIKDDGQLTQATDKDKNESLVAGVYNIVGFISVKLKKLETISGILDGMKQKVIAVNSAGDKFIEKVKAQHASLNTESDAKKAIDKTDGDGSKGGKELSDLNTAIDALLKAANDAVTAAINELTTSVKPSNT
SIO_010081: bpuSUM_RS07970
subclass of: SO_0000673
so part of: bpuSUM_RS07970
location: 18611..19240
location: region:18611-19240:1
so has part: feature:18611-19240:1:exon

WP_247067737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18611-19240:1:exon

bpuSUM_RS07975
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07975
old locus tag: bpuSUM_001589
so part of: sequence
location: 19395..20396
location: region:19395-20396:1
so has part: feature:19395-20396:1:exon
subclass of: SO_0000010

position:19395:1
position: 19395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20396:1
position: 20396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19395-20396:1:exon

bpuSUM_RS07975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07975
old locus tag: bpuSUM_001589
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633353.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MFSCGSGTTKMEDPKTTFLTSIANLGKGFLDVFTSLSDMIAGTFGIKAETKKSDIGNYFTSIETTMNSVKEKLQEEVAKNGNYLKIKTVVDTLITNTLDKIADGAKTAASGATGDVTIGNAVKDQAATHADFTSVNALVRGIKTIVDVVLKDGDGDAGATKTGNTEQKSIGKLLGKKDDGTEAHAAAASASIGAVIGADILQAIAKSGEAANNDVEIEKAKNAAEIAAAKKEDTKELNAAVAQKDAVIAAGIALRAMAKGGKFAANAEKDANAVNGAVSSAVNKTLSTLIIAIRNTVDSGLKSISDALAAVKQEDKSADFTTPADATANGQKH
SIO_010081: bpuSUM_RS07975
subclass of: SO_0000673
so part of: bpuSUM_RS07975
location: 19395..20396
location: region:19395-20396:1
so has part: feature:19395-20396:1:exon

WP_247067739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19395-20396:1:exon

bpuSUM_RS07980
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07980
old locus tag: bpuSUM_001590
so part of: sequence
location: 20488..21345
location: region:20488-21345:1
so has part: feature:20488-21345:1:exon
subclass of: SO_0000010

position:20488:1
position: 20488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21345:1
position: 21345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20488-21345:1:exon

bpuSUM_RS07980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07980
old locus tag: bpuSUM_001590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MTLFLLLSCGSGTTSAEDSQGRFLKSVISLSNDFLNVFTSLSGMVGGGLGFNTTTKKSDVENYFKTIEKSLTTTKTSLEKIVDDMKSENNPNAEATDTAVKKLVSEILNKIIEGAKTASEVIGDAGDPIGNVGANNAAGVVGTEVDKLVKGIKDIVAVVLKEGNPEAGDDKKAENLSARTGSNATDGEAGKLFAIANAGNADNAKKSAADAAKAIVKNGKFAGSSAQADDAVTAVNGAAISAVTKALGTLTIAIRETIDAGLKTVKDAMKINSTDTLLTTDNQTP
SIO_010081: bpuSUM_RS07980
subclass of: SO_0000673
so part of: bpuSUM_RS07980
location: 20488..21345
location: region:20488-21345:1
so has part: feature:20488-21345:1:exon

WP_247067725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20488-21345:1:exon

bpuSUM_RS07985
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07985
old locus tag: bpuSUM_001591
so part of: sequence
location: 21905..22780
location: region:21905-22780:1
so has part: feature:21905-22780:1:exon
subclass of: SO_0000010

position:21905:1
position: 21905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22780:1
position: 22780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21905-22780:1:exon

bpuSUM_RS07985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07985
old locus tag: bpuSUM_001591
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633329.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKRSILSVCILALLCLLSCDINALNDLLSEVREKFLDESKDNKYLNHEQGNQEQKEVVIDLLEEGVDIQQDMGVRPVNAEFEVFRQEYPYYSQEEIEIKEEDLTPSTESEKEADKAIKGVENTLKNSGFPLLMSAYNLKNEYEQMRTELYYVTKRIQDEIGLLRGTGFKGKRQNLNRLQGCLRGEIFNSEDLMNKIDIAIGELESAKYFFEEAQKTLKEAITERLRSKKRRSYSSRGSNSDFLTRKARSDAENVSSLLESSSSRIGEAMGIKKEIEEVINEAKSVLGSLSG
SIO_010081: bpuSUM_RS07985
subclass of: SO_0000673
so part of: bpuSUM_RS07985
location: 21905..22780
location: region:21905-22780:1
so has part: feature:21905-22780:1:exon

WP_247067727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21905-22780:1:exon

bpuSUM_RS07990
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
gene: thyX
locus tag: bpuSUM_RS07990
old locus tag: bpuSUM_001592
so part of: sequence
location: 22940..23764
location: region:22940-23764:1
so has part: feature:22940-23764:1:exon
subclass of: SO_0000010

position:22940:1
position: 22940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23764:1
position: 23764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22940-23764:1:exon

bpuSUM_RS07990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
gene: thyX
locus tag: bpuSUM_RS07990
old locus tag: bpuSUM_001592
EC number: 2.1.1.148
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537731.1
GO function: GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO process: GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent thymidylate synthase
translation: MNTDIEREDLLNKEYKVLDKGFIKLVDYMGSDKRILNAARISYRGESIRRTDDELIDYLVRNEHTSPFEQVVFTFYIKAPIFVARQWMRHRTARINEVSGSYSFLREEFYVPLEEDLKIQNIESNQIEANFAKNVLSDLRESQKTCYKLYQDMINSNVSKEVSRIALPLSLYTEWYWQIDLNNLFHFIKLRLALNESKEVSENSSKEMSEYAKILLDVIEKLVPIATKSFKNHILKGCRLSYEEIIAISGALNISKLKLDDKALNRLKDKLNIK
SIO_010081: bpuSUM_RS07990
subclass of: SO_0000673
so part of: bpuSUM_RS07990
location: 22940..23764
location: region:22940-23764:1
so has part: feature:22940-23764:1:exon

WP_247067729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22940-23764:1:exon

bpuSUM_RS07995
type: Gene
subclass of: SO_0000704
RO_0002162: 2756107
locus tag: bpuSUM_RS07995
old locus tag: bpuSUM_001593
so part of: sequence
location: 23853..24443
location: region:23853-24443:1
so has part: feature:23853-24443:1:exon
subclass of: SO_0000010

position:23853:1
position: 23853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24443:1
position: 24443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23853-24443:1:exon

bpuSUM_RS07995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2756107
locus tag: bpuSUM_RS07995
old locus tag: bpuSUM_001593
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537734.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREKINFIYRIVFIFCIICFVSCELFKNSDNKGDLFQNLGHVNLKSDWRDNLKLNKEEFDTLTFFVNALKNELPKGGSSHFDIYLQGDVSKIEGYIKRFLLKLNDKGKVKELLKHIKYGKDNPLNIEGRDEKLNIDAKDYYKIEKRLTDVFDNYFMFLNPPSSPSGPPPLIENDPEEKVFESIKKVCYEHRHRNKN
SIO_010081: bpuSUM_RS07995
subclass of: SO_0000673
so part of: bpuSUM_RS07995
location: 23853..24443
location: region:23853-24443:1
so has part: feature:23853-24443:1:exon

WP_247067731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23853-24443:1:exon