Borrelia puertoricensis strain SUM plasmid lp110, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
Submitted (17-MAY-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP075391.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1138.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/23/2022 17:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,976\nCDSs (total) :: 1,938\nGenes (coding) :: 1,830\nCDSs (with protein) :: 1,830\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 72 of 108\nPseudo Genes (incomplete) :: 37 of 108\nPseudo Genes (internal stop) :: 24 of 108\nPseudo Genes (multiple problems) :: 23 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011771998.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012537780.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683114.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683113.1
COORDINATES: protein motif:HMM:NF017525.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683094.1
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: similar to AA sequence:RefSeq:WP_014683146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683152.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539290.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_001215827.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014683161.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_014683162.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539414.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539416.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683166.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683168.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257732.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539308.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683177.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539431.1
COORDINATES: protein motif:HMM:NF028354.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683197.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539443.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012539444.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703782.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539325.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539451.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683206.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539331.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683208.1
COORDINATES: protein motif:HMM:NF013836.2
GO:0070569 - uridylyltransferase activity [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011771966.1
COORDINATES: similar to AA sequence:RefSeq:WP_011771965.1