Borrelia puertoricensis strain SUM plasmid lp10, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
Submitted (17-MAY-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP075390.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1138.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/23/2022 17:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,976\nCDSs (total) :: 1,938\nGenes (coding) :: 1,830\nCDSs (with protein) :: 1,830\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 72 of 108\nPseudo Genes (incomplete) :: 37 of 108\nPseudo Genes (internal stop) :: 24 of 108\nPseudo Genes (multiple problems) :: 23 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014468.2
COORDINATES: similar to AA sequence:RefSeq:WP_014023086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1