Borrelia puertoricensis strain SUM plasmid cp28-1, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
Submitted (17-MAY-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP075381.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1138.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/23/2022 17:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,976\nCDSs (total) :: 1,938\nGenes (coding) :: 1,830\nCDSs (with protein) :: 1,830\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 72 of 108\nPseudo Genes (incomplete) :: 37 of 108\nPseudo Genes (internal stop) :: 24 of 108\nPseudo Genes (multiple problems) :: 23 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012539720.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014696780.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890338.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696777.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539219.1
COORDINATES: similar to AA sequence:RefSeq:WP_006434308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539830.1
COORDINATES: protein motif:HMM:NF017132.2
COORDINATES: similar to AA sequence:RefSeq:WP_011600659.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539826.1
COORDINATES: similar to AA sequence:RefSeq:WP_008882889.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017496.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658568.1
COORDINATES: protein motif:HMM:NF017358.2
COORDINATES: similar to AA sequence:RefSeq:WP_002658563.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540912.1
COORDINATES: similar to AA sequence:RefSeq:WP_008882888.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539755.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539817.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002658553.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540034.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539234.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_014540879.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540092.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658538.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539230.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012539544.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539227.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014696684.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537885.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539224.1