Brochothrix thermosphacta strain TMW 2.1564 plasmid pL21564-1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Brochothrix.
Meat spoilage bacteria Genome sequencing and assembly
Submitted (10-AUG-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP016840.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Bthermosphacta21564\nLong Assembly Name :: Brochothrix thermosphacta TMW 2.1564\nGenome Coverage :: 151\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/18/2023 01:51:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,503\nCDSs (total) :: 2,387\nGenes (coding) :: 2,359\nCDSs (with protein) :: 2,359\nGenes (RNA) :: 116\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 9 of 28\nPseudo Genes (incomplete) :: 14 of 28\nPseudo Genes (internal stop) :: 7 of 28\nPseudo Genes (multiple problems) :: 2 of 28\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024755.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_003725277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003725278.1
COORDINATES: similar to AA sequence:RefSeq:WP_002410913.1
COORDINATES: similar to AA sequence:RefSeq:WP_003725281.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022781.2
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003728468.1
COORDINATES: similar to AA sequence:RefSeq:WP_010815727.1
COORDINATES: protein motif:HMM:NF036321.2
COORDINATES: protein motif:HMM:NF016232.2
isopeptide-forming domain-containing fimbrial protein
COORDINATES: similar to AA sequence:RefSeq:WP_002311846.1
COORDINATES: similar to AA sequence:RefSeq:WP_002317410.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_016078752.1
COORDINATES: similar to AA sequence:RefSeq:WP_002317411.1
COORDINATES: similar to AA sequence:RefSeq:WP_000883996.1
COORDINATES: similar to AA sequence:RefSeq:WP_010792230.1
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_002313317.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002313319.1
COORDINATES: similar to AA sequence:RefSeq:WP_002362769.1
COORDINATES: protein motif:HMM:NF025081.2
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]