Actinomadura graeca strain 32-07 plasmid pAGRA3207_1, complete sequence.
type: Entry
definition: Actinomadura graeca strain 32-07 plasmid pAGRA3207_1, complete sequence.
sequence version: NZ_CP059573.1
sequence date: 2023-03-20
sequence: sequence
division: CON
label: NZ_CP059573.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15467565
keyword: RefSeq
source: Actinomadura graeca
organism: Actinomadura graeca
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Thermomonosporaceae; Actinomadura.
reference: 1
references: 34847153
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP059573.1.\nBacteria and source DNA available from Weng Chan, Biodiscovery\nInstitute, University of Nottingham, Nottingham NG7 2RD.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nAssembly Name :: UON_Agra_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 122.82x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 06:22:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,924\nCDSs (total) :: 7,838\nGenes (coding) :: 7,739\nCDSs (with protein) :: 7,739\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 99\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 99\nPseudo Genes (frameshifted) :: 28 of 99\nPseudo Genes (incomplete) :: 79 of 99\nPseudo Genes (internal stop) :: 8 of 99\nPseudo Genes (multiple problems) :: 14 of 99\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18745
topology: circular
so has quality: SO_0000988
location: 1..18745
location: region:1-18745:1
RO_0002162: 2750812

NZ_CP059573
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15467565
type: BioSample
SIO_000068: biosample

1
title: Actinomadura graeca sp. nov.: A novel producer of the macrocyclic antibiotic zelkovamycin
author: Tarantini, F.S.
author: Brunati, M.
author: Taravella, A.
author: Carrano, L.
author: Parenti, F.
author: Hong, K.W.
author: Williams, P.
author: Chan, K.G.
author: Heeb, S.
author: Chan, W.C.
journal: PLoS One 16 (11), e0260413 (2021)
pubmed: 34847153
comments: Publication Status: Online-Only

34847153
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Tarantini, F.S.
author: Hong, K.W.
author: Chan, K.G.
journal: Submitted (27-JUL-2020) Biodiscovery Institute, The University of Nottingham, University Park, Nottingham, Nottinghamshire NG7 2RD, UK

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18745:1
position: 18745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18745:1:source
so part of: sequence
organism: Actinomadura graeca
mol type: genomic DNA
strain: 32-07
isolation source: soil
type material: type strain of Actinomadura graeca
plasmid: pAGRA3207_1
country: Greece: Santorini
collection date: 2009-08-05
collected by: Mara Brunati
identified by: Francesco Saverio Tarantini

2750812
type: Taxonomy
SIO_000068: taxonomy

AGRA3207_RS39485
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39485
old locus tag: AGRA3207_007851
so part of: sequence
location: 62..424
location: region:62-424:1
so has part: feature:62-424:1:exon
subclass of: SO_0000010

position:62:1
position: 62
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424:1
position: 424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62-424:1:exon

AGRA3207_RS39485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39485
old locus tag: AGRA3207_007851
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKPTKGDRVRTTVRFPATHYRLYMEHAERLDVPMADYVVCRMAICDGLPIPAALYHSVPALIMMSEADDWPSILDGLPPVTAARVRRKLAEAAETDPQVRRDVKRLGLEEDGQQLAMTG
SIO_010081: AGRA3207_RS39485
subclass of: SO_0000673
so part of: AGRA3207_RS39485
location: 62..424
location: region:62-424:1
so has part: feature:62-424:1:exon

WP_231336561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62-424:1:exon

AGRA3207_RS39490
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39490
old locus tag: AGRA3207_007852
so part of: sequence
location: 660..1907
location: region:660-1907:1
so has part: feature:660-1907:1:exon
subclass of: SO_0000010

position:660:1
position: 660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907:1
position: 1907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660-1907:1:exon

AGRA3207_RS39490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39490
old locus tag: AGRA3207_007852
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAGRWRGLVGQVPEGARAAEGLAEVWRALAVDVRLHVELRRADGRRHVLAVARVLLERADWTTLESRPGHALIAAEVGVCPRTVARCVDLLHRWGYLSTREVGTTETIRAGRTRGRDPHRGQGNRAQTYRLCVPLWTTETRYQAAEGPHDGQVPKIRRVSAGHRPKPLNVHPSRPSRSEGQGRAAEISRLRRPDGYAGARVACGGAAVAAGRPTAGMATITARARRRAARPGWLDRTRSVAEVWQALPAELTGRLAGHEADRLAAELARQLDHRTPAELADRIARHWDYWRYKIVAEVTRSVAAVAFKIIRRDFQCPDVRCEDRWHLDQDAPCKACALAASERRAAHAPQGAAERPAAPAAACDPPAPSPPPVQAVLAELAAHQGTGPATGPDGEGPGAAEFRRRAAELRARRR
SIO_010081: AGRA3207_RS39490
subclass of: SO_0000673
so part of: AGRA3207_RS39490
location: 660..1907
location: region:660-1907:1
so has part: feature:660-1907:1:exon

WP_231336562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:660-1907:1:exon

AGRA3207_RS39495
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39495
old locus tag: AGRA3207_007853
so part of: sequence
location: complement(1927..2457)
location: region:1927-2457:-1
so has part: feature:1927-2457:-1:exon
subclass of: SO_0000010

position:1927:-1
position: 1927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2457:-1
position: 2457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1927-2457:-1:exon

AGRA3207_RS39495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39495
old locus tag: AGRA3207_007853
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDSEQRQEHHAGDRVTERLAGRDCRWCGTWVPYRGTGRPRDYCSKSCRNRASEVRTIEARLGRQLAAGRLRTAPVREVVERVVERVIERPAAPARPDENEDEGRDEEMAVLAGDVLAVPATAREWRHVLDLLATALTEPGPLRARHYDHRHIHHGLVAVLRALDHAHPGGLADLD
SIO_010081: AGRA3207_RS39495
subclass of: SO_0000673
so part of: AGRA3207_RS39495
location: complement(1927..2457)
location: region:1927-2457:-1
so has part: feature:1927-2457:-1:exon

WP_231336563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1927-2457:-1:exon

AGRA3207_RS39500
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39500
old locus tag: AGRA3207_007854
so part of: sequence
location: 2905..3237
location: region:2905-3237:1
so has part: feature:2905-3237:1:exon
subclass of: SO_0000010

position:2905:1
position: 2905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3237:1
position: 3237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2905-3237:1:exon

AGRA3207_RS39500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39500
old locus tag: AGRA3207_007854
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGKKIGKALAPVVVAGAVLGALTSPASADEGQLVLYNGTNHYIQAEPGCVPLDTAITNVTYGNNRSAFRVRVYQTQSCTGSHKAEFGPWESRSVPNVNAVSVRFFETRA
SIO_010081: AGRA3207_RS39500
subclass of: SO_0000673
so part of: AGRA3207_RS39500
location: 2905..3237
location: region:2905-3237:1
so has part: feature:2905-3237:1:exon

WP_231336564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2905-3237:1:exon

AGRA3207_RS39505
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39505
old locus tag: AGRA3207_007855
so part of: sequence
location: 4458..4610
location: region:4458-4610:1
so has part: feature:4458-4610:1:exon
subclass of: SO_0000010

position:4458:1
position: 4458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4610:1
position: 4610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4458-4610:1:exon

AGRA3207_RS39505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39505
old locus tag: AGRA3207_007855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: STAS domain-containing protein
translation: MRPGVPWPCTGTMALAAPRPAVQRALDTAGFPGSFQVFATVEAAATPAPP
SIO_010081: AGRA3207_RS39505
subclass of: SO_0000673
so part of: AGRA3207_RS39505
location: 4458..4610
location: region:4458-4610:1
so has part: feature:4458-4610:1:exon

WP_231336565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4458-4610:1:exon

AGRA3207_RS39510
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39510
old locus tag: AGRA3207_007856
so part of: sequence
location: complement(4649..5788)
location: region:4649-5788:-1
so has part: feature:4649-5788:-1:exon
subclass of: SO_0000010

position:4649:-1
position: 4649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5788:-1
position: 5788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4649-5788:-1:exon

AGRA3207_RS39510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39510
old locus tag: AGRA3207_007856
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MDDAPLTGTLIGAAAAASRASVTVSPDGRGVDVPAPMVASVGDIAGLAPRRARGDGGEVAAADVDLVDALPRDLAWSTVAAWLTAGKSVSTRRARLADLAAWLRWLQAHAPGLALLAATEDTVTGYREAIATGTARAGIKTPGKPLSAASVARRLSSLASFYGYAVRRAGLARNPAAAELVERPEVAGVGVTPSRTLGEAVALLEGAERIAPGHPGDAAAVALLISTGLRAAEVAGLSAERIGTDAGHYVIRVRVKGGKTVAVPLPPRVCALVLPRTEGKRPADLIITREDGRPFDRWRLTTALRRAARAAEVDPAGLTPHVLRATAATLLLDAGVPVELVQDLLGHASPVTTQRYDRGTRRLDGHATYRLASILAGGA
SIO_010081: AGRA3207_RS39510
subclass of: SO_0000673
so part of: AGRA3207_RS39510
location: complement(4649..5788)
location: region:4649-5788:-1
so has part: feature:4649-5788:-1:exon

WP_231336566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4649-5788:-1:exon

AGRA3207_RS39515
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39515
old locus tag: AGRA3207_007857
so part of: sequence
location: complement(5860..6606)
location: region:5860-6606:-1
so has part: feature:5860-6606:-1:exon
subclass of: SO_0000010

position:5860:-1
position: 5860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6606:-1
position: 6606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5860-6606:-1:exon

AGRA3207_RS39515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39515
old locus tag: AGRA3207_007857
inference: COORDINATES: protein motif:HMM:NF024986.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pentapeptide repeat-containing protein
translation: MDEDDEEIAPGITRDHIHPYADLTAANLEGADLTGANLTAADLTRANLTAANLTAANLSRANLSRANLIHANLIHARLIGAYLVGVSLLGADLTGADLTGAYLPQRHLAASHKSVLLGGVRLSEVRLNGADLADAYLVDADLTGANLIHANLIDANLARANLARANLTDANLNGALLTGADLTEAILIGTRLLRARWTGAEAEGRQDRPGSWGETRWPAAWKTGITRRSAQVGRGLYEVVGEDPGGPA
SIO_010081: AGRA3207_RS39515
subclass of: SO_0000673
so part of: AGRA3207_RS39515
location: complement(5860..6606)
location: region:5860-6606:-1
so has part: feature:5860-6606:-1:exon

WP_231336567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5860-6606:-1:exon

AGRA3207_RS39520
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39520
old locus tag: AGRA3207_007858
so part of: sequence
location: 6844..7305
location: region:6844-7305:1
so has part: feature:6844-7305:1:exon
subclass of: SO_0000010

position:6844:1
position: 6844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7305:1
position: 7305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6844-7305:1:exon

AGRA3207_RS39520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39520
old locus tag: AGRA3207_007858
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREAPRMLEIRTDDDARPATPDGPHDHEQTRAIAEAIGAAARLLNYATSPEKRGLRYPSDVYTVLGSLASAVALLPQALGQMTQFIGAEVDTGHARENPRYGDHGGDAAAAHAALRAAAQQATGHAEALRAALDRCQAATRGLESSRPDPEDA
SIO_010081: AGRA3207_RS39520
subclass of: SO_0000673
so part of: AGRA3207_RS39520
location: 6844..7305
location: region:6844-7305:1
so has part: feature:6844-7305:1:exon

WP_231336568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6844-7305:1:exon

AGRA3207_RS39525
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39525
old locus tag: AGRA3207_007859
so part of: sequence
location: 7305..7574
location: region:7305-7574:1
so has part: feature:7305-7574:1:exon
subclass of: SO_0000010

position:7574:1
position: 7574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7305-7574:1:exon

AGRA3207_RS39525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39525
old locus tag: AGRA3207_007859
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006246259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQEHQLPTWNDIVGSALGELNTARNGLSEAAAWLRSDWRPLGTPLPGGTGDARAEVFELIGQAKALIDQAKGSLYRARRGDDEAGLEDA
SIO_010081: AGRA3207_RS39525
subclass of: SO_0000673
so part of: AGRA3207_RS39525
location: 7305..7574
location: region:7305-7574:1
so has part: feature:7305-7574:1:exon

WP_231336569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7305-7574:1:exon

AGRA3207_RS39530
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39530
old locus tag: AGRA3207_007860
so part of: sequence
location: 7571..7975
location: region:7571-7975:1
so has part: feature:7571-7975:1:exon
subclass of: SO_0000010

position:7571:1
position: 7571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7975:1
position: 7975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7571-7975:1:exon

AGRA3207_RS39530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39530
old locus tag: AGRA3207_007860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014145814.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPGPGPAATGPTGPAPGHGAAELAEARRARAVAELAGLARERRALEDRTRPAVLAARAAGVPVRRVAELAEVSPDTVNRWTAEAARDLLAAGGDVADVARQVGAREGTVRRWATERQDQDGPGRPARPLNSTR
SIO_010081: AGRA3207_RS39530
subclass of: SO_0000673
so part of: AGRA3207_RS39530
location: 7571..7975
location: region:7571-7975:1
so has part: feature:7571-7975:1:exon

WP_231336570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7571-7975:1:exon

AGRA3207_RS39535
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39535
old locus tag: AGRA3207_007861
so part of: sequence
location: 8361..9182
location: region:8361-9182:1
so has part: feature:8361-9182:1:exon
subclass of: SO_0000010

position:8361:1
position: 8361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9182:1
position: 9182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8361-9182:1:exon

AGRA3207_RS39535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39535
old locus tag: AGRA3207_007861
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSTLVSAQYSEKGGVGKTSITTGMAATAAEDGARVIVVDADPRASATEELGVVVGPQTLTLNDLLYVPEDADPVDPAEAIGDVLLPAGEHWPGTVRVIAAERQLAHRETDPHAIEGRLARGLAALDGEADLVLIDLPPRAGGKLVTTGLTAATHVVIPTMLTTDGYSGVAHARRSLRLIRQGANPGLTYAGIVRSIVPRESDRRAVHDQIDTDLAEDFPGEVVAVQITEYAIREDARYTSFPITRAPGREAKILADQYRALLDHLRSTGGIRV
SIO_010081: AGRA3207_RS39535
subclass of: SO_0000673
so part of: AGRA3207_RS39535
location: 8361..9182
location: region:8361-9182:1
so has part: feature:8361-9182:1:exon

WP_231336571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8361-9182:1:exon

AGRA3207_RS39540
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39540
old locus tag: AGRA3207_007862
so part of: sequence
location: 9175..10125
location: region:9175-10125:1
so has part: feature:9175-10125:1:exon
subclass of: SO_0000010

position:9175:1
position: 9175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10125:1
position: 10125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9175-10125:1:exon

AGRA3207_RS39540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39540
old locus tag: AGRA3207_007862
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010999792.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKLLNKGRLGKTGEADPAAPEATGQDQTPATTTDTADTAAAPSRAGKRAARPPAGPGTVPAPPAAEVDAEGALNARERADLAACEAALDGLRLAFWAAGKALQTIRDARLYRAGHDTFERYVTDRWGMQTSQAYRLIAAWPVAEALSPIGDRINEAQVRELLPLAARHGTDAAVTVYETVVEVAADADDVKVTAAVLRGAVGVVADAEAFDPARAADDIRAYLTGQLGPDPAAPADPAEAFTAEADRLRAAVTRTVGRPAFRDYARQNPDAARAVVAELRALLDSVEADADGETGGRRPGRDGGRTSRQRRTGNR
SIO_010081: AGRA3207_RS39540
subclass of: SO_0000673
so part of: AGRA3207_RS39540
location: 9175..10125
location: region:9175-10125:1
so has part: feature:9175-10125:1:exon

WP_231336572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9175-10125:1:exon

AGRA3207_RS39545
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39545
old locus tag: AGRA3207_007863
so part of: sequence
location: complement(10188..10970)
location: region:10188-10970:-1
so has part: feature:10188-10970:-1:exon
subclass of: SO_0000010

position:10188:-1
position: 10188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10970:-1
position: 10970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10188-10970:-1:exon

AGRA3207_RS39545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39545
old locus tag: AGRA3207_007863
inference: COORDINATES: protein motif:HMM:NF019322.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MTDITDGRSRQTRIADDLRAKIRTGVLQPGERLPGLPDLVTGYGIDMPGVSMNTVRLAIAKLRQEGLIISKQGKGNFVRTELPVRRHGIERYSRSVWGGKEPKALLEAEGGRQGRSVRQDTETAIVPAPAFVAKRLDGVSEGDPVHVRRRVTRLDGVINQAADSYFTLATGERSPAVVAGEGQGGHIARINAISPVLEVEEEITARMPTGPESSRLDIPEGTPVLDVIRTYHTEIGALDITKFVIRADMAVFNYRFPIPD
SIO_010081: AGRA3207_RS39545
subclass of: SO_0000673
so part of: AGRA3207_RS39545
location: complement(10188..10970)
location: region:10188-10970:-1
so has part: feature:10188-10970:-1:exon

WP_231336553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10188-10970:-1:exon

AGRA3207_RS39550
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39550
old locus tag: AGRA3207_007864
so part of: sequence
location: 11186..11422
location: region:11186-11422:1
so has part: feature:11186-11422:1:exon
subclass of: SO_0000010

position:11186:1
position: 11186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11422:1
position: 11422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11186-11422:1:exon

AGRA3207_RS39550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39550
old locus tag: AGRA3207_007864
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018684857.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BldC family transcriptional regulator
translation: MPEPSYPAKSVSEERFLTPAEVGALFRVDPKTATRWAAQGRVGSIRTPGGHRRFRESEIRALLADEAAAESDALEVSA
SIO_010081: AGRA3207_RS39550
subclass of: SO_0000673
so part of: AGRA3207_RS39550
location: 11186..11422
location: region:11186-11422:1
so has part: feature:11186-11422:1:exon

WP_231336573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11186-11422:1:exon

AGRA3207_RS39555
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39555
old locus tag: AGRA3207_007865
so part of: sequence
location: 11419..12867
location: region:11419-12867:1
so has part: feature:11419-12867:1:exon
subclass of: SO_0000010

position:11419:1
position: 11419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12867:1
position: 12867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11419-12867:1:exon

AGRA3207_RS39555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39555
old locus tag: AGRA3207_007865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGGRGRKDAAVPVVDDPAELATALGREREVAAARRRHELERERAEAGHGRDRADLAEAARLAELERAERAEDAAASVGLARLYRQARAAGERTRITSEMARSGEARALRLERLRRRNLLVLVPLLIGFGVWSTTGVQQGAARLMAVDMHSPVWWVLWGLEGLLIGLVCWVIICRAVLGAAGGRLDASEGPGRANRPGFGDAEKVAAGALTVSVFLNLVAAVPAELSASAGWWAVPGAMFAHLIGPVGAAVTAHLIGVVDKAITGADPWTGQDGRPVPLLAEMDLAVPALMTAAPALDTPAENTPQDAPGNTPVTVPAPPVWPVPCEGRRVLPVVARPAENGRPAAPRTGGDRREDRAAGTARRSRPNRGKRVPEAAKPAPVRPTDDELTARLAGLLEAGDAERTVRSAMRALGVGYERARRVLDGLPENAAENTGEGAGAWALAPGRSGPVLLTSPDVPAALAVADADGQAARAAGTAVAS
SIO_010081: AGRA3207_RS39555
subclass of: SO_0000673
so part of: AGRA3207_RS39555
location: 11419..12867
location: region:11419-12867:1
so has part: feature:11419-12867:1:exon

WP_231336554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11419-12867:1:exon

AGRA3207_RS39560
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39560
old locus tag: AGRA3207_007866
so part of: sequence
location: 12873..13313
location: region:12873-13313:1
so has part: feature:12873-13313:1:exon
subclass of: SO_0000010

position:12873:1
position: 12873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13313:1
position: 13313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12873-13313:1:exon

AGRA3207_RS39560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39560
old locus tag: AGRA3207_007866
inference: COORDINATES: protein motif:HMM:NF024970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MGCPEAAGWRAGWRMPGTAGTVGRARHNVSAELELWALPAELVDDVVLTVSELVTNAVRHTHSGRPGGAYALVVTAEADGVRVAVADQGAVTEPRVPVPACDSATGGRGLCTVARLGSLGWEGGPAGRRVWALLPYPPRDLDGLPR
SIO_010081: AGRA3207_RS39560
subclass of: SO_0000673
so part of: AGRA3207_RS39560
location: 12873..13313
location: region:12873-13313:1
so has part: feature:12873-13313:1:exon

WP_231336574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12873-13313:1:exon

AGRA3207_RS39565
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39565
old locus tag: AGRA3207_007867
so part of: sequence
location: 13310..13966
location: region:13310-13966:1
so has part: feature:13310-13966:1:exon
subclass of: SO_0000010

position:13310:1
position: 13310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13966:1
position: 13966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13310-13966:1:exon

AGRA3207_RS39565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39565
old locus tag: AGRA3207_007867
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGHVALYRDLNAALEGLAVAGAAADRAELLDTAGDLYARLGAGGGRAAGPRAAAASLAWSLAAAERGMSPGQVLGLDDADDLSARVPVMVASVAEAVVWERLAGRGLAGDDDVDRAEALSDLAGLAADRWGPVAARLLAVAAEAAMHRACWLVTAPTTGPAPAADLAAGPAGGVCRPRSLWVVLAVTGAAAVAGAMAVALAQVSRSSHLLIGGVTPS
SIO_010081: AGRA3207_RS39565
subclass of: SO_0000673
so part of: AGRA3207_RS39565
location: 13310..13966
location: region:13310-13966:1
so has part: feature:13310-13966:1:exon

WP_231336555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13310-13966:1:exon

AGRA3207_RS39570
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39570
old locus tag: AGRA3207_007868
so part of: sequence
location: 14039..14392
location: region:14039-14392:1
so has part: feature:14039-14392:1:exon
subclass of: SO_0000010

position:14039:1
position: 14039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14392:1
position: 14392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14039-14392:1:exon

AGRA3207_RS39570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39570
old locus tag: AGRA3207_007868
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMSQLTAIVADAPSQVPTAPAAAPNPALVGGGGAVLVVLLLGFYLHMQLKAKKARVPHVLAAFVAGVLLAGSVLGAVALQASTTAGSSLTQLLTTVTGTPGGTGTGTGTGTGTGTGR
SIO_010081: AGRA3207_RS39570
subclass of: SO_0000673
so part of: AGRA3207_RS39570
location: 14039..14392
location: region:14039-14392:1
so has part: feature:14039-14392:1:exon

WP_231336556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14039-14392:1:exon

AGRA3207_RS39575
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39575
old locus tag: AGRA3207_007869
so part of: sequence
location: 14626..14868
location: region:14626-14868:1
so has part: feature:14626-14868:1:exon
subclass of: SO_0000010

position:14626:1
position: 14626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14868:1
position: 14868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14626-14868:1:exon

AGRA3207_RS39575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39575
old locus tag: AGRA3207_007869
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSPERSPRELADALRRIDNRLQFFRARQAAAAGPVERAAVTWDQWRALTRDVPAELAARLADDLTDVMNAHIRQMARED
SIO_010081: AGRA3207_RS39575
subclass of: SO_0000673
so part of: AGRA3207_RS39575
location: 14626..14868
location: region:14626-14868:1
so has part: feature:14626-14868:1:exon

WP_231336557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14626-14868:1:exon

AGRA3207_RS39580
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39580
so part of: sequence
location: 14871..17594
location: region:14871-17594:1
so has part: feature:14871-17594:1:exon
subclass of: SO_0000010

position:14871:1
position: 14871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17594:1
position: 17594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14871-17594:1:exon

AGRA3207_RS39580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017605057.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA translocase FtsK
translation: MATRNPPPERPPGGAADPYRLTWRDRVGQAWESLRGHREELTAEQLHAAAYGTDPAAEGPQDGAGPGAGPGDSAEDAEAADGAVGAVRRHWERVGVGGRVTWSRLRGWVTTEAMAAEALAEKVAADLAAEAAAQREVVEAERAGHAARQGRAYAPRRRAAAEPEIVPTAEELEKARTRMRWARGGGLAAAVLVAVQTITSNLRTGNFWFVLVVVVGTVAYFWHAGGRALRDQEESQDQAAEDEGPDITAVPADATTATSATAPAAPATGPEGGARAELAVVAVNGAPVVVDPCADYELPDAAELLRAEPPRTGGEREAERIRDRIAAVLADFKVDASVVGITRGPTVTLFEIRPGKGVKVTKITGLAENITLAVKSPVPARMLPAVPGRDTVGVEVPNPTKDLVRLGDVLRSEAATAEPHPMVVGLGKDVEGRTVVANLAKMPHILIAGATGAGKSSCINGLICSVLIRANPCEVRLILIDPKRVELRPYQGVPHLLMPIITNARKAAEALAWLCGEMDRRYGLMERHGVRHVLDLNAKIAAAAGRGRPLRDAEGQDLTQPVPYLLTIVDELADLMMVAPKDVEDSVVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRLAFATSSLADSRVVLDAPGAEKLLGNGDALYLPMGASQPMRLQNSYVSDPEIDAVVRHCKGQAANIRALAGPDTGPDAGAAANSTTPPAPDAAPIGGPDGEGQDALGGGRGHGPDGGQAEAGAAALAGAEALLAVLTADGGPLEWEALAERTGQARATIYRHARRLVADGRIRVVPAGGWQIVPADGPDTSADGTAPAVAAATPDGEEAELLACAVELVVSTQFGSTSMLQRKLRVGYRQASALMDAMFVRGLVGPSHGSAPCEVLVTPDELPAVLAGLRAGR
SIO_010081: AGRA3207_RS39580
subclass of: SO_0000673
so part of: AGRA3207_RS39580
location: 14871..17594
location: region:14871-17594:1
so has part: feature:14871-17594:1:exon

WP_231336558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14871-17594:1:exon

AGRA3207_RS39585
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39585
old locus tag: AGRA3207_007872
so part of: sequence
location: 17661..18053
location: region:17661-18053:1
so has part: feature:17661-18053:1:exon
subclass of: SO_0000010

position:17661:1
position: 17661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18053:1
position: 18053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17661-18053:1:exon

AGRA3207_RS39585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39585
old locus tag: AGRA3207_007872
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVLEDLEMSPDDTRELIGSLEGEAPAVAHLMTALADLAEALENEELLDAVYEQSTEMRRPHVRVLVGVLGHALDRLCDGFGAVELESRLAEAPEALDSWESAMESAREALTALAEDLARPRGERGDRDR
SIO_010081: AGRA3207_RS39585
subclass of: SO_0000673
so part of: AGRA3207_RS39585
location: 17661..18053
location: region:17661-18053:1
so has part: feature:17661-18053:1:exon

WP_231336559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17661-18053:1:exon

AGRA3207_RS39590
type: Gene
subclass of: SO_0000704
RO_0002162: 2750812
locus tag: AGRA3207_RS39590
old locus tag: AGRA3207_007873
so part of: sequence
location: 18151..18600
location: region:18151-18600:1
so has part: feature:18151-18600:1:exon
subclass of: SO_0000010

position:18151:1
position: 18151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18600:1
position: 18600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18151-18600:1:exon

AGRA3207_RS39590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2750812
locus tag: AGRA3207_RS39590
old locus tag: AGRA3207_007873
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018218225.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator
translation: MTAATDRAARAGLVFLAWHAAHGYADHIGQRPHDAEHKGDPGWPGRIACARHVAGLTATKAVALGLALAATGVRLNPRSVAAAMAADAITHYVIDRRAPLARFAEAIGKGGFYRLGDPKAAPVGTGAYAMDQAAHDVPLAAASVLAALG
SIO_010081: AGRA3207_RS39590
subclass of: SO_0000673
so part of: AGRA3207_RS39590
location: 18151..18600
location: region:18151-18600:1
so has part: feature:18151-18600:1:exon

WP_231336560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18151-18600:1:exon