Adhaeribacter radiodurans strain KUDC8001 plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Adhaeribacter.
Adhaeribacter dokdonensis sp. nov., isolated from the rhizosphere of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea
Submitted (16-JUN-2020) Research Institute for Dok-do & Ulleung-do Island, Kyungpook National University, 80 Daehakro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP055152.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 177.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 14:31:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,388\nCDSs (total) :: 5,333\nGenes (coding) :: 5,274\nCDSs (with protein) :: 5,274\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 16 of 59\nPseudo Genes (incomplete) :: 32 of 59\nPseudo Genes (internal stop) :: 19 of 59\nPseudo Genes (multiple problems) :: 7 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type material of Adhaeribacter radiodurans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013634830.1
GO:0016740 - transferase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017730978.1
COORDINATES: similar to AA sequence:RefSeq:WP_017731559.1
COORDINATES: protein motif:HMM:NF038065.1
COORDINATES: similar to AA sequence:RefSeq:WP_016990397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007660442.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008381 - mechanosensitive ion channel activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
large conductance mechanosensitive channel protein MscL
COORDINATES: similar to AA sequence:RefSeq:WP_007654609.1
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015671526.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008157924.1
COORDINATES: similar to AA sequence:RefSeq:WP_003406307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493759.1
COORDINATES: similar to AA sequence:RefSeq:WP_002701575.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_013072037.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_007659572.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478212.1
COORDINATES: similar to AA sequence:RefSeq:WP_020538149.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008612768.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949151.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480033.1
COORDINATES: similar to AA sequence:RefSeq:WP_007660668.1
COORDINATES: similar to AA sequence:RefSeq:WP_013687947.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014678809.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018343999.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002993378.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017730675.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931251.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015056777.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489447.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012931242.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022551.1
COORDINATES: similar to AA sequence:RefSeq:WP_013185822.1
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949140.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019530557.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732256.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017733998.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019240.2
COORDINATES: similar to AA sequence:RefSeq:WP_018477026.1
COORDINATES: similar to AA sequence:RefSeq:WP_020604939.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002980937.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF013555.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
topoisomerase DNA-binding C4 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480044.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018480043.1
COORDINATES: protein motif:HMM:NF037510.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_005647355.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480028.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661352.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480021.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_008512973.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765224.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002657193.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949618.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011870569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015814894.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013407616.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013632912.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003443031.1
COORDINATES: similar to AA sequence:RefSeq:WP_018944611.1
COORDINATES: similar to AA sequence:RefSeq:WP_007656026.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_017732425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004876198.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011937941.1
COORDINATES: similar to AA sequence:RefSeq:WP_007658670.1
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007654954.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020527610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016196654.1
COORDINATES: similar to AA sequence:RefSeq:WP_016196787.1
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016196784.1
COORDINATES: similar to AA sequence:RefSeq:WP_020604733.1
COORDINATES: similar to AA sequence:RefSeq:WP_002643419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018618913.1
COORDINATES: similar to AA sequence:RefSeq:WP_008239049.1