Limosilactobacillus portuensis strain LV1276_C155 plasmid pLV1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus.
Complete Genome Sequences of Two Limosilactobacillus vaginalis Strains Isolated from the Urine of Postmenopausal Women
Submitted (03-FEB-2023) Biological Sciences, University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX 75080, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP117297.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1x\nSequencing Technology :: Illumina; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 18:36:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,012\nCDSs (total) :: 1,934\nGenes (coding) :: 1,898\nCDSs (with protein) :: 1,898\nGenes (RNA) :: 78\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 16 of 36\nPseudo Genes (incomplete) :: 11 of 36\nPseudo Genes (internal stop) :: 11 of 36\nPseudo Genes (multiple problems) :: 2 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005728424.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
COORDINATES: similar to AA sequence:RefSeq:WP_003712275.1
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: similar to AA sequence:RefSeq:WP_003625174.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01167.1
COORDINATES: protein motif:HMM:NF019962.2
COORDINATES: similar to AA sequence:RefSeq:WP_014216312.1
COORDINATES: similar to AA sequence:RefSeq:WP_003715860.1
COORDINATES: similar to AA sequence:RefSeq:WP_006290884.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002486791.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007124593.1
COORDINATES: similar to AA sequence:RefSeq:WP_006290888.1
COORDINATES: similar to AA sequence:RefSeq:WP_015639365.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003672076.1
COORDINATES: similar to AA sequence:RefSeq:WP_003079533.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007127116.1
COORDINATES: similar to AA sequence:RefSeq:WP_012678713.1
COORDINATES: similar to AA sequence:RefSeq:WP_005717340.1
COORDINATES: similar to AA sequence:RefSeq:WP_019781202.1
COORDINATES: similar to AA sequence:RefSeq:WP_015425905.1
COORDINATES: similar to AA sequence:RefSeq:WP_003587146.1
COORDINATES: similar to AA sequence:RefSeq:WP_003696511.1
COORDINATES: similar to AA sequence:RefSeq:WP_002824684.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007124631.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011241744.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003715897.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
COORDINATES: similar to AA sequence:RefSeq:WP_006917122.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_003715885.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014567977.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003712342.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003714169.1
COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007124978.1
COORDINATES: similar to AA sequence:RefSeq:WP_015638862.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003712346.1
COORDINATES: protein motif:HMM:NF016136.2
COORDINATES: similar to AA sequence:RefSeq:WP_003712350.1
COORDINATES: similar to AA sequence:RefSeq:WP_003684379.1
COORDINATES: similar to AA sequence:RefSeq:WP_004563897.1
COORDINATES: similar to AA sequence:RefSeq:WP_003714199.1
COORDINATES: similar to AA sequence:RefSeq:WP_003715867.1
COORDINATES: similar to AA sequence:RefSeq:WP_003714208.1
COORDINATES: similar to AA sequence:RefSeq:WP_003715856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019251300.1
COORDINATES: similar to AA sequence:RefSeq:WP_003714197.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003714183.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_003714193.1
COORDINATES: similar to AA sequence:RefSeq:WP_003714206.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003715878.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007124613.1
GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019251306.1
COORDINATES: similar to AA sequence:RefSeq:WP_007124611.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007124610.1
COORDINATES: similar to AA sequence:RefSeq:WP_003717776.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003586788.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011241751.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003712277.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002825830.1
COORDINATES: similar to AA sequence:RefSeq:WP_003712273.1
ribbon-helix-helix domain-containing protein