Cherax quadricarinatus isolate HC-2022 chromosome 99, ASM2687515v2, whole genome shotgun sequence.
type: Entry
definition: Cherax quadricarinatus isolate HC-2022 chromosome 99, ASM2687515v2, whole genome shotgun sequence.
sequence version: NC_069497.1
sequence date: 2023-02-23
sequence: sequence
division: CON
label: NC_069497.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA923327
dblink: SAMN31875550
keyword: WGS
keyword: RefSeq
source: Cherax quadricarinatus
organism: Cherax quadricarinatus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM049293.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 18801782
topology: linear
so has quality: SO_0000987
location: 1..18801782
location: region:1-18801782:1
RO_0002162: 27406

NC_069497
type: RefSeq
SIO_000068: refseq

PRJNA923327
type: BioProject
SIO_000068: bioproject

SAMN31875550
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18801782:1
position: 18801782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18801782:1:source
so part of: sequence
organism: Cherax quadricarinatus
mol type: genomic DNA
isolate: HC-2022
chromosome: 99
sex: male
tissue type: muscle

27406
type: Taxonomy
SIO_000068: taxonomy

LOC128705049
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705049
note: small nucleolar RNA SNORD109A; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4369642..4369712)
location: region:4369642-4369712:-1
so has part: feature:4369642-4369712:-1:exon
subclass of: SO_0000578

128705049
type: Gene
SIO_000068: ncbigene

position:4369642:-1
position: 4369642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4369712:-1
position: 4369712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4369642-4369712:-1:exon

LOC128705049
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27406
nc RNA class: snoRNA
gene: LOC128705049
product: small nucleolar RNA SNORD109A
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01278
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008409640.1
SIO_010081: LOC128705049
subclass of: SO_0000673
so part of: LOC128705049
location: complement(4369642..4369712)
location: region:4369642-4369712:-1
so has part: feature:4369642-4369712:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4369642-4369712:-1:exon

LOC128705039
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705039
note: uncharacterized LOC128705039; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5645290..5650373
location: region:5645290-5650373:1
so has part: feature:5645290-5650373:1:exon
subclass of: SO_0000011

128705039
type: Gene
SIO_000068: ncbigene

position:5645290:1
position: 5645290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5650373:1
position: 5650373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5645290-5650373:1:exon

LOC128705039
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27406
nc RNA class: lncRNA
gene: LOC128705039
product: uncharacterized LOC128705039
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008409634.1
SIO_010081: LOC128705039
subclass of: SO_0000673
so part of: LOC128705039
location: join(5645290..5645363,5646915..5646979,5649917..5650373)
location: region:5645290-5650373:1
so has part: feature:5645290-5645363:1:exon
so has part: feature:5646915-5646979:1:exon
so has part: feature:5649917-5650373:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5645290-5645363:1:exon

position:5645363:1
position: 5645363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5646915-5646979:1:exon

position:5646915:1
position: 5646915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5646979:1
position: 5646979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5649917-5650373:1:exon

position:5649917:1
position: 5649917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128705042
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705042
note: uncharacterized LOC128705042; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8387536..8402428
location: region:8387536-8402428:1
so has part: feature:8387536-8402428:1:exon
subclass of: SO_0000010

128705042
type: Gene
SIO_000068: ncbigene

position:8387536:1
position: 8387536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8402428:1
position: 8402428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8387536-8402428:1:exon

LOC128705042
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705042
product: uncharacterized LOC128705042
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053800294.1
SIO_010081: LOC128705042
subclass of: SO_0000673
so part of: LOC128705042
location: join(8387536..8387893,8388018..8388123,8401671..8402022,8402057..8402428)
location: region:8387536-8402428:1
so has part: feature:8387536-8387893:1:exon
so has part: feature:8388018-8388123:1:exon
so has part: feature:8401671-8402022:1:exon
so has part: feature:8402057-8402428:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8387536-8387893:1:exon

position:8387893:1
position: 8387893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8388018-8388123:1:exon

position:8388018:1
position: 8388018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8388123:1
position: 8388123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8401671-8402022:1:exon

position:8401671:1
position: 8401671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8402022:1
position: 8402022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8402057-8402428:1:exon

position:8402057:1
position: 8402057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128705042
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705042
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128705042
translation: MEFLDADVVEDLIRTKERLLGEGSYGNVYLVTYRDELAALKTSKCRQKKDKALEKYCSSFLKEAKILQALKGAGGAPVLHGIQDNPSAMLMSYKGSQNLLDILQGSTYNLLDVGIQIGRRRIIFMEGDPEDFPWCAPEILCWKPSTPATDVFSYGIYTATVSCCLMVTMEFLDADVVEDLIRTKERLLGEGSYGNVYLVTYRDELAALKTSKCRQKKDKALEKYCSSFLKEAKILQALKGAGGAPVLHGIQDNPSAMLMSYKGSQNLLDIYRIGKKLQEIHEAGYIHNDLKEDNIIIDGSAEEPQVSIIDYGLACPKGRIIFMEGDPEDFPWCAPEILCWKPSTPATDVFSYGYVMSLVLKALKSWPKGLDNVVSQAMDPNPKHRPSLRELLRRN
SIO_010081: LOC128705042
subclass of: SO_0000673
so part of: LOC128705042
location: join(8387536..8387893,8388018..8388123,8401671..8402022,8402057..8402428)
location: region:8387536-8402428:1
so has part: feature:8387536-8387893:1:exon
so has part: feature:8388018-8388123:1:exon
so has part: feature:8401671-8402022:1:exon
so has part: feature:8402057-8402428:1:exon

XP_053656269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8387536-8387893:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8388018-8388123:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8401671-8402022:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8402057-8402428:1:exon

LOC128705043
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705043
note: calponin homology domain-containing protein DDB_G0272472-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8398244..8400562)
location: region:8398244-8400562:-1
so has part: feature:8398244-8400562:-1:exon
subclass of: SO_0000010

128705043
type: Gene
SIO_000068: ncbigene

position:8398244:-1
position: 8398244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8400562:-1
position: 8400562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8398244-8400562:-1:exon

LOC128705043
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705043
product: calponin homology domain-containing protein DDB_G0272472-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800295.1
SIO_010081: LOC128705043
subclass of: SO_0000673
so part of: LOC128705043
location: complement(join(8398244..8400127,8400279..8400562))
location: region:8398244-8400562:-1
so has part: feature:8400279-8400562:-1:exon
so has part: feature:8398244-8400127:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8400279-8400562:-1:exon

position:8400279:-1
position: 8400279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8398244-8400127:-1:exon

position:8400127:-1
position: 8400127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128705043
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705043
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calponin homology domain-containing protein DDB_G0272472-like
translation: MDSLDFWLKAGKEMGFTGQSLDGYITAKMAIEEKKEQERLAREEKRLAIEEKKEQERLAREEKKEQERLAREEKKEQERLAREEKRLAQEKKEEQERLAREDKIEQERIAREDRVQAREVAFKMKEIELEQARLELEAKKIELSKQKIDEGVLEYPSQEPNIRMPQIPPFSEQDDIAAYITRFESTATLCDWPSRFLGY
SIO_010081: LOC128705043
subclass of: SO_0000673
so part of: LOC128705043
location: complement(8398745..8399344)
location: region:8398745-8399344:-1
so has part: feature:8398745-8399344:-1:exon

XP_053656270.1
type: Protein
SIO_000068: ncbiprotein

position:8398745:-1
position: 8398745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8399344:-1
position: 8399344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8398745-8399344:-1:exon

LOC128705047
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705047
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 9235642..9235760
location: region:9235642-9235760:1
so has part: feature:9235642-9235760:1:exon

128705047
type: Gene
SIO_000068: ncbigene

position:9235642:1
position: 9235642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9235760:1
position: 9235760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9235642-9235760:1:exon

LOC128705047
type: Exon
subclass of: SO_0000147
RO_0002162: 27406
gene: LOC128705047
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC128705047
subclass of: SO_0000673
so part of: LOC128705047
location: 9235642..9235760
location: region:9235642-9235760:1
so has part: feature:9235642-9235760:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9235642-9235760:1:exon

LOC128705048
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705048
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 9252013..9252131
location: region:9252013-9252131:1
so has part: feature:9252013-9252131:1:exon

128705048
type: Gene
SIO_000068: ncbigene

position:9252013:1
position: 9252013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9252131:1
position: 9252131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9252013-9252131:1:exon

LOC128705048
type: Exon
subclass of: SO_0000147
RO_0002162: 27406
gene: LOC128705048
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC128705048
subclass of: SO_0000673
so part of: LOC128705048
location: 9252013..9252131
location: region:9252013-9252131:1
so has part: feature:9252013-9252131:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9252013-9252131:1:exon

LOC128705046
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705046
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(9315111..9315216)
location: region:9315111-9315216:-1
so has part: feature:9315111-9315216:-1:exon
subclass of: SO_0000623

128705046
type: Gene
SIO_000068: ncbigene

position:9315111:-1
position: 9315111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9315216:-1
position: 9315216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9315111-9315216:-1:exon

LOC128705046
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27406
nc RNA class: snRNA
gene: LOC128705046
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008409639.1
SIO_010081: LOC128705046
subclass of: SO_0000673
so part of: LOC128705046
location: complement(9315111..9315216)
location: region:9315111-9315216:-1
so has part: feature:9315111-9315216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9315111-9315216:-1:exon

LOC128705044
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705044
note: golgin subfamily A member 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <9404423..9546864
location: region:9404423-9546864:1
so has part: feature:9404423-9546864:1:exon
subclass of: SO_0000010

128705044
type: Gene
SIO_000068: ncbigene

position:9404423:1
position: 9404423
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:9546864:1
position: 9546864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9404423-9546864:1:exon

LOC128705044
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705044
product: golgin subfamily A member 1-like
inference: similar to RNA sequence (same species):INSD:HACK01075070.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 267 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
transcript id: XM_053800296.1
SIO_010081: LOC128705044
subclass of: SO_0000673
so part of: LOC128705044
location: join(<9404423..9404511,9404779..9404975,9450270..9450399,9490119..9490250,9494644..9494864,9500826..9501374,9502726..9502870,9504248..9504345,9538796..9546864)
location: region:9404423-9546864:1
so has part: feature:9404423-9404511:1:exon
so has part: feature:9404779-9404975:1:exon
so has part: feature:9450270-9450399:1:exon
so has part: feature:9490119-9490250:1:exon
so has part: feature:9494644-9494864:1:exon
so has part: feature:9500826-9501374:1:exon
so has part: feature:9502726-9502870:1:exon
so has part: feature:9504248-9504345:1:exon
so has part: feature:9538796-9546864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9404423-9404511:1:exon

position:9404511:1
position: 9404511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9404779-9404975:1:exon

position:9404779:1
position: 9404779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9404975:1
position: 9404975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9450270-9450399:1:exon

position:9450270:1
position: 9450270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9450399:1
position: 9450399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9490119-9490250:1:exon

position:9490119:1
position: 9490119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9490250:1
position: 9490250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9494644-9494864:1:exon

position:9494644:1
position: 9494644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9494864:1
position: 9494864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9500826-9501374:1:exon

position:9500826:1
position: 9500826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9501374:1
position: 9501374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9502726-9502870:1:exon

position:9502726:1
position: 9502726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9502870:1
position: 9502870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9504248-9504345:1:exon

position:9504248:1
position: 9504248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9504345:1
position: 9504345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9538796-9546864:1:exon

position:9538796:1
position: 9538796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128705044
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705044
inference: similar to RNA sequence (same species):INSD:HACK01075070.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 267 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 3
product: LOW QUALITY PROTEIN: golgin subfamily A member 1-like
translation: QVEELEREIGKLRTALESQQDAALQRLNAREHDWKTRLQDEQDKLSILTGDLAASVEREKQLQQTIDTLNAAKHQSADHLKQTQARVKVLEGRVCEVQENFDQLEGLNAQEIAKIKHMLLNTNSELEQSQARLKETTAALTSAESRLAWASSLEQRVAALSDEKTELETQVAGLSKKLDVANARYKSLEESKKEETEHLEYRISTLEQRYSHTALQESDKVQVLMKEREAMEHCLEEARQQLNNIKASWSDKITALENQIRHLNAKIAEDQSDLQEAEGRTEALMSELSTLKAQNLSXGGEKAEMEEKLASEASLLKEDLETVRWQLNNTVVEKDTHIDTLRQQLSAEEVKHQSCAGVLQCKLENIATLEQRLMEMEEEAVVVKDNLTTAQAELVSAQNEKKSLQETLQQLRTTLETLERGKLEIKSKLDTVSSEKATLSRNLDEYVDKVGALERRVRTLENEAETNTTMLSETEAELTRVKLECEALRTQLRSSEDDLASKIEASEIISGLKERVKNLEDELAEKKQALKVQGQRVADMKKTIQRELRLTADTAADIVADHRTDARPRDASPVTNGLATNTSADNGLNVNHTYLKHVIIKYLTSREYEAVHLTRAVATLLNMTTEEERLLRETLEWKMSWFGSKPNLGKGQTAKTIPPSQ
SIO_010081: LOC128705044
subclass of: SO_0000673
so part of: LOC128705044
location: join(<9404423..9404511,9404779..9404975,9450270..9450399,9490119..9490250,9494644..9494864,9500826..9501374,9502726..9502870,9504248..9504345,9538796..9538954)
location: region:9404423-9538954:1
so has part: feature:9404423-9404511:1:exon
so has part: feature:9404779-9404975:1:exon
so has part: feature:9450270-9450399:1:exon
so has part: feature:9490119-9490250:1:exon
so has part: feature:9494644-9494864:1:exon
so has part: feature:9500826-9501374:1:exon
so has part: feature:9502726-9502870:1:exon
so has part: feature:9504248-9504345:1:exon
so has part: feature:9538796-9538954:1:exon

XP_053656271.1
type: Protein
SIO_000068: ncbiprotein

position:9538954:1
position: 9538954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9404423-9404511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9404779-9404975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9450270-9450399:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9490119-9490250:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9494644-9494864:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9500826-9501374:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9502726-9502870:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9504248-9504345:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9538796-9538954:1:exon

Trnaq-cug
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: Trnaq-cug
note: transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 9931387..9931458
location: region:9931387-9931458:1
so has part: feature:9931387-9931458:1:exon
subclass of: SO_0000663

128705050
type: Gene
SIO_000068: ncbigene

position:9931387:1
position: 9931387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9931458:1
position: 9931458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9931387-9931458:1:exon

Trnaq-cug
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 27406
gene: Trnaq-cug
product: tRNA-Gln
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:9931420..9931422,aa:Gln,seq:ctg)
SIO_010081: Trnaq-cug
subclass of: SO_0000673
so part of: Trnaq-cug
location: 9931387..9931458
location: region:9931387-9931458:1
so has part: feature:9931387-9931458:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9931387-9931458:1:exon

LOC128705040
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705040
note: uncharacterized LOC128705040; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 12311048..12312081
location: region:12311048-12312081:1
so has part: feature:12311048-12312081:1:exon
subclass of: SO_0000011

128705040
type: Gene
SIO_000068: ncbigene

position:12311048:1
position: 12311048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12312081:1
position: 12312081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12311048-12312081:1:exon

LOC128705040
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 27406
nc RNA class: lncRNA
gene: LOC128705040
product: uncharacterized LOC128705040
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008409635.1
SIO_010081: LOC128705040
subclass of: SO_0000673
so part of: LOC128705040
location: join(12311048..12311321,12311520..12311681,12311764..12312081)
location: region:12311048-12312081:1
so has part: feature:12311048-12311321:1:exon
so has part: feature:12311520-12311681:1:exon
so has part: feature:12311764-12312081:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12311048-12311321:1:exon

position:12311321:1
position: 12311321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12311520-12311681:1:exon

position:12311520:1
position: 12311520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12311681:1
position: 12311681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12311764-12312081:1:exon

position:12311764:1
position: 12311764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128705041
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705041
note: uncharacterized LOC128705041; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14143238..14145764)
location: region:14143238-14145764:-1
so has part: feature:14143238-14145764:-1:exon
subclass of: SO_0000010

128705041
type: Gene
SIO_000068: ncbigene

position:14143238:-1
position: 14143238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14145764:-1
position: 14145764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14143238-14145764:-1:exon

LOC128705041
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705041
product: uncharacterized LOC128705041, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800293.1
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(join(14143238..14144058,14144138..14144575,14144919..14145764))
location: region:14143238-14145764:-1
so has part: feature:14144919-14145764:-1:exon
so has part: feature:14144138-14144575:-1:exon
so has part: feature:14143238-14144058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14144919-14145764:-1:exon

position:14144919:-1
position: 14144919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14144138-14144575:-1:exon

position:14144138:-1
position: 14144138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14144575:-1
position: 14144575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14143238-14144058:-1:exon

position:14144058:-1
position: 14144058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128705041
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705041
product: uncharacterized LOC128705041, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800292.1
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(join(14143238..14144058,14144138..14144691,14144775..14145764))
location: region:14143238-14145764:-1
so has part: feature:14144775-14145764:-1:exon
so has part: feature:14144138-14144691:-1:exon
so has part: feature:14143238-14144058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14144775-14145764:-1:exon

position:14144775:-1
position: 14144775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14144138-14144691:-1:exon

position:14144691:-1
position: 14144691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14143238-14144058:-1:exon

LOC128705041
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705041
product: uncharacterized LOC128705041, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800291.1
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(join(14143238..14144058,14144138..14145764))
location: region:14143238-14145764:-1
so has part: feature:14144138-14145764:-1:exon
so has part: feature:14143238-14144058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14144138-14145764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14143238-14144058:-1:exon

LOC128705041
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705041
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128705041 isoform X3
translation: MSPQVNSLPHFPKVSGILAVRRIMYPGILPSTAGYLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQLHVFLPCSGSCIQESIRSLRMSPLPHLPKVSLNCMYSCLAQVHVSRNPSARSGCLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQQQPSSSSCIQESIRSLRMSSLPHFPKVGGAFPGSVSPGVHLCHLSGLPSPLPQSQRCLPRISVSRSPLVSPQVDSLPHFPRVSGAFPGSVSPGVH
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(join(14143904..14144058,14144138..14144575,14144919..14145144))
location: region:14143904-14145144:-1
so has part: feature:14144919-14145144:-1:exon
so has part: feature:14144138-14144575:-1:exon
so has part: feature:14143904-14144058:-1:exon

XP_053656268.1
type: Protein
SIO_000068: ncbiprotein

position:14143904:-1
position: 14143904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14145144:-1
position: 14145144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14144919-14145144:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14144138-14144575:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14143904-14144058:-1:exon

LOC128705041
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705041
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128705041 isoform X2
translation: MSPQVNSLPHFPKVSGILAVRRIMYPGILPSTAGYLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQQQPYSSSCIQESIRSLRMSSLPHFPKVGGAFPGSVSPGVHLCHLSGLPSPLPQGQRYSCRPQDHVSRNPSVYRRISSLPHLPKVSLNCMYSCLAQVHVSRNPSARSGCLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQLHVFLPCSGSCIQESIRSLRMSPLPHLPKVSLNNNLPQVHVSRNPSARSGCLPFPISLRSAVPSPDQCLQESTCVT
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(join(14144138..14144691,14144775..14145144))
location: region:14144138-14145144:-1
so has part: feature:14144775-14145144:-1:exon
so has part: feature:14144138-14144691:-1:exon

XP_053656267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14144775-14145144:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14144138-14144691:-1:exon

LOC128705041
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705041
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128705041 isoform X1
translation: MSPQVNSLPHFPKVSGILAVRRIMYPGILPSTAGYLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQQQPYSSSCIQESIRSLRMSSLPHFPKVGGAFPGSVSPGVHLCHLSGLPSPLPQSQRCLPRISVSRSPLMSPQVDSLPHFPKVSGILAVRRIMYPGILPFTAGYLPFPTYPRSASTACILALLRFMYPGIHPLAPDVSPSPLTQGQPQLHVFLPCSGSCIQESIRSLRMSPLPHLPKVSLNCMYSCLAQVHVSRNPSARSGCLPFPTYPRSASTTTFLKFMYPGIHPLAPDVFPSPFP
SIO_010081: LOC128705041
subclass of: SO_0000673
so part of: LOC128705041
location: complement(14144194..14145144)
location: region:14144194-14145144:-1
so has part: feature:14144194-14145144:-1:exon

XP_053656266.1
type: Protein
SIO_000068: ncbiprotein

position:14144194:-1
position: 14144194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14144194-14145144:-1:exon

LOC128705045
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705045
note: uncharacterized LOC128705045; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<15918941..15919369)
location: region:15918941-15919369:-1
so has part: feature:15918941-15919369:-1:exon
subclass of: SO_0000010

128705045
type: Gene
SIO_000068: ncbigene

position:15918941:-1
position: 15918941
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15919369:-1
position: 15919369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15918941-15919369:-1:exon

LOC128705045
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705045
product: uncharacterized LOC128705045
inference: similar to RNA sequence (same species):INSD:HACK01022730.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 77 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800297.1
SIO_010081: LOC128705045
subclass of: SO_0000673
so part of: LOC128705045
location: complement(<15918941..15919369)
location: region:15918941-15919369:-1
so has part: feature:15918941-15919369:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15918941-15919369:-1:exon

LOC128705045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705045
inference: similar to RNA sequence (same species):INSD:HACK01022730.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 28 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128705045
translation: MKFEENGLREEESGCVVAAGRFPRLRRPPQRLRFPKKNNLSQSTTKQEQERQIIYQEIPDPKWLEFKPDYKPNQVPTNLTTKDVPVEQPKKNKKNKTKKNQNKDNSTVNNEKKKKTKKAILNKKKH
SIO_010081: LOC128705045
subclass of: SO_0000673
so part of: LOC128705045
location: complement(<15918941..15919293)
location: region:15918941-15919293:-1
so has part: feature:15918941-15919293:-1:exon

XP_053656272.1
type: Protein
SIO_000068: ncbiprotein

position:15919293:-1
position: 15919293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15918941-15919293:-1:exon

LOC128705038
type: Gene
subclass of: SO_0000704
RO_0002162: 27406
gene: LOC128705038
note: zinc finger BED domain-containing protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16871179..16872226)
location: region:16871179-16872226:-1
so has part: feature:16871179-16872226:-1:exon
subclass of: SO_0000010

128705038
type: Gene
SIO_000068: ncbigene

position:16871179:-1
position: 16871179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16872226:-1
position: 16872226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16871179-16872226:-1:exon

LOC128705038
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 27406
gene: LOC128705038
product: zinc finger BED domain-containing protein 5-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_053800290.1
SIO_010081: LOC128705038
subclass of: SO_0000673
so part of: LOC128705038
location: complement(join(16871179..16871697,16871963..16872226))
location: region:16871179-16872226:-1
so has part: feature:16871963-16872226:-1:exon
so has part: feature:16871179-16871697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16871963-16872226:-1:exon

position:16871963:-1
position: 16871963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16871179-16871697:-1:exon

position:16871697:-1
position: 16871697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128705038
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 27406
gene: LOC128705038
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger BED domain-containing protein 5-like
translation: MASDILSQVTTEINESSYGKFSLQFDESCDVASCAVLLGFVRYVHQDKIKEEFLLCEDLLTTTKGEDVFNIINSFFTKNGLDWNSVQQVSVDGAPSMMGGHRGLRGLIQAINPEISVDHCIIHRYSLGSKSLPGNLKLVFEDVLKIVNFIKSRDVNSRIFKELCKEMGEQYQVLLYHTDVRWLSRGKVVRRVIELRKAVQEFLEQKGSPFATKFTDKEWLARLYYLADIFAELNSGNLQLQGRNTTVIDAHHTVTAFLGN
SIO_010081: LOC128705038
subclass of: SO_0000673
so part of: LOC128705038
location: complement(join(16871179..16871697,16871963..16872226))
location: region:16871179-16872226:-1
so has part: feature:16871963-16872226:-1:exon
so has part: feature:16871179-16871697:-1:exon

XP_053656265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16871963-16872226:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16871179-16871697:-1:exon