Cherax quadricarinatus isolate HC-2022 chromosome 99, ASM2687515v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049293.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##
small nucleolar RNA SNORD109A; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01278
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128705039; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705042; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
calponin homology domain-containing protein DDB_G0272472-like; Derived by automated computational analysis using gene prediction method: Gnomon.
calponin homology domain-containing protein DDB_G0272472-like
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
golgin subfamily A member 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01075070.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 267 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 267 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: golgin subfamily A member 1-like
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC128705040; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705041; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705041, transcript variant X3
uncharacterized LOC128705041, transcript variant X2
uncharacterized LOC128705041, transcript variant X1
uncharacterized protein LOC128705041 isoform X3
uncharacterized protein LOC128705041 isoform X2
uncharacterized protein LOC128705041 isoform X1
uncharacterized LOC128705045; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01022730.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 77 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 28 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger BED domain-containing protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger BED domain-containing protein 5-like