Cherax quadricarinatus isolate HC-2022 chromosome 98, ASM2687515v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049292.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128704962; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128704968; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704975; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704969; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704977; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704981; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704981, transcript variant X1
uncharacterized LOC128704981, transcript variant X2
uncharacterized LOC128704981, transcript variant X3
uncharacterized protein LOC128704981 isoform X1
uncharacterized protein LOC128704981 isoform X2
uncharacterized LOC128704979; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704978; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins
uncharacterized LOC128704980; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704980, transcript variant X1
uncharacterized LOC128704980, transcript variant X2
UDP-glucosyltransferase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
UDP-glucosyltransferase 2-like, transcript variant X4
UDP-glucosyltransferase 2-like, transcript variant X5
UDP-glucosyltransferase 2-like, transcript variant X3
UDP-glucosyltransferase 2-like, transcript variant X2
UDP-glucosyltransferase 2-like, transcript variant X1
UDP-glucosyltransferase 2-like isoform X1
UDP-glucosyltransferase 2-like isoform X2
UDP-glucosyltransferase 2-like isoform X3
UDP-glycosyltransferase UGT5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
UDP-glycosyltransferase UGT5-like, transcript variant X1
UDP-glycosyltransferase UGT5-like, transcript variant X2
protein tamozhennic-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein tamozhennic-like
uncharacterized LOC128704970; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 3 Proteins
uncharacterized LOC128704971; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128704971
uncharacterized LOC128704963; Derived by automated computational analysis using gene prediction method: Gnomon.
carbonic anhydrase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
carbonic anhydrase 2-like, transcript variant X2
carbonic anhydrase 2-like, transcript variant X1
uncharacterized LOC128704987; Derived by automated computational analysis using gene prediction method: Gnomon.
toll-like receptor Tollo; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
LOW QUALITY PROTEIN: toll-like receptor Tollo
uncharacterized LOC128704965; Derived by automated computational analysis using gene prediction method: Gnomon.
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00001
MOXD1 homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
LOW QUALITY PROTEIN: MOXD1 homolog 1-like
uncharacterized LOC128704973; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
PDZ domain-containing RING finger protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
PDZ domain-containing RING finger protein 4-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: PDZ domain-containing RING finger protein 4-like
uncharacterized LOC128704966; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704990; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704974; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
uncharacterized LOC128704991; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704991, transcript variant X2
uncharacterized LOC128704991, transcript variant X1
cysteine protease ATG4D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine protease ATG4D-like, transcript variant X1
similar to RNA sequence (same species):INSD:HACK01010893.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1304 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 1196 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine protease ATG4D-like, transcript variant X2
cytochrome P450 2L1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 12 Proteins
cytochrome P450 2L1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
cytochrome P450 2L1-like, transcript variant X1
uncharacterized LOC128704945; Derived by automated computational analysis using gene prediction method: Gnomon.
protein LSM14 homolog B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein LSM14 homolog B-like, transcript variant X1
protein LSM14 homolog B-like, transcript variant X2
cytochrome c1, heme protein, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c1, heme protein, mitochondrial-like, transcript variant X1
cytochrome c1, heme protein, mitochondrial-like isoform X1
cytochrome c1, heme protein, mitochondrial-like, transcript variant X2
cytochrome c1, heme protein, mitochondrial-like isoform X2
V-type proton ATPase catalytic subunit A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
V-type proton ATPase catalytic subunit A-like
probable N-acetyltransferase san; Derived by automated computational analysis using gene prediction method: Gnomon.
choline transporter-like protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
choline transporter-like protein 4, transcript variant X1
choline transporter-like protein 4, transcript variant X2
choline transporter-like protein 4, transcript variant X11
choline transporter-like protein 4, transcript variant X4
choline transporter-like protein 4, transcript variant X9
choline transporter-like protein 4, transcript variant X7
choline transporter-like protein 4, transcript variant X6
choline transporter-like protein 4, transcript variant X5
choline transporter-like protein 4, transcript variant X8
choline transporter-like protein 4, transcript variant X14
choline transporter-like protein 4, transcript variant X3
choline transporter-like protein 4, transcript variant X15
choline transporter-like protein 4, transcript variant X10
choline transporter-like protein 4, transcript variant X13
choline transporter-like protein 4, transcript variant X12
choline transporter-like protein 4 isoform X2
choline transporter-like protein 4 isoform X1
choline transporter-like protein 4 isoform X4
choline transporter-like protein 4 isoform X3
choline transporter-like protein 4 isoform X5
choline transporter-like protein 4 isoform X6
biogenesis of lysosome-related organelles complex 1 subunit 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
biogenesis of lysosome-related organelles complex 1 subunit 6-like, transcript variant X1
biogenesis of lysosome-related organelles complex 1 subunit 6-like, transcript variant X2
biogenesis of lysosome-related organelles complex 1 subunit 6-like
integumentary mucin C.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein
uncharacterized LOC128704947; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
argininosuccinate synthase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
LOW QUALITY PROTEIN: argininosuccinate synthase-like
uncharacterized LOC128705004; Derived by automated computational analysis using gene prediction method: Gnomon.
FACT complex subunit SPT16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein C12orf4 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
protein C12orf4 homolog, transcript variant X2
protein C12orf4 homolog, transcript variant X1
vacuolar fusion protein MON1 homolog A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar fusion protein MON1 homolog A-like
exportin-6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription elongation factor SPT6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription elongation factor SPT6-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
GTPase Era, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein obstructor-E-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 15 Proteins
histone acetyltransferase KAT6B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: histone acetyltransferase KAT6B-like
dynein axonemal light chain 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins
inosine-5'-monophosphate dehydrogenase 1b-like; Derived by automated computational analysis using gene prediction method: Gnomon.
inosine-5'-monophosphate dehydrogenase 1b-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
ATPase ASNA1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase ASNA1 homolog, transcript variant X2
ATPase ASNA1 homolog, transcript variant X1
ATPase ASNA1 homolog, transcript variant X3
ATPase ASNA1 homolog, transcript variant X4
sideroflexin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sideroflexin-2-like, transcript variant X3
sideroflexin-2-like, transcript variant X1
sideroflexin-2-like, transcript variant X2
MAPK regulated corepressor interacting protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
MAPK regulated corepressor interacting protein 2-like, transcript variant X2
MAPK regulated corepressor interacting protein 2-like, transcript variant X1
MAPK regulated corepressor interacting protein 2-like isoform X2
MAPK regulated corepressor interacting protein 2-like isoform X1
inhibitor of nuclear factor kappa-B kinase subunit epsilon-like; Derived by automated computational analysis using gene prediction method: Gnomon.
inhibitor of nuclear factor kappa-B kinase subunit epsilon-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 13 Proteins
LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon-like
uncharacterized LOC128705015; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705017; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
brahma-associated protein of 60 kDa-like; Derived by automated computational analysis using gene prediction method: Gnomon.
brahma-associated protein of 60 kDa-like
similar to RNA sequence (same species):INSD:HACK01022438.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 332 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 320 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
teneurin-m-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl isomerase domain and WD repeat-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
protein Churchill-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein Churchill-like, transcript variant X2
protein Churchill-like, transcript variant X4
protein Churchill-like, transcript variant X6
protein Churchill-like, transcript variant X8
protein Churchill-like, transcript variant X3
protein Churchill-like, transcript variant X7
protein Churchill-like, transcript variant X5
protein Churchill-like, transcript variant X1
ribitol 5-phosphate transferase FKRP-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ribitol 5-phosphate transferase FKRP-like
fizzy-related protein homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 10 Proteins
myosin light chain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light chain 1, transcript variant X3
myosin light chain 1, transcript variant X1
myosin light chain 1, transcript variant X4
myosin light chain 1, transcript variant X2
glutamate receptor ionotropic, delta-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
glutamate receptor ionotropic, delta-1-like
leukocyte receptor cluster member 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
leukocyte receptor cluster member 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins
uncharacterized LOC128704956; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705027; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128705027
uncharacterized LOC128705029; Derived by automated computational analysis using gene prediction method: Gnomon.
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 4 Proteins
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like isoform X2
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like isoform X1
integral membrane protein GPR155-like; Derived by automated computational analysis using gene prediction method: Gnomon.
integral membrane protein GPR155-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 4 Proteins
integral membrane protein GPR155-like, transcript variant X2
integral membrane protein GPR155-like, transcript variant X3
integral membrane protein GPR155-like isoform X1
integral membrane protein GPR155-like isoform X2
uncharacterized LOC128705032; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128705032, transcript variant X6
uncharacterized LOC128705032, transcript variant X3
uncharacterized LOC128705032, transcript variant X5
uncharacterized LOC128705032, transcript variant X1
uncharacterized LOC128705032, transcript variant X7
uncharacterized LOC128705032, transcript variant X2
uncharacterized LOC128705032, transcript variant X4
uncharacterized protein LOC128705032 isoform X1
uncharacterized protein LOC128705032 isoform X2
monocarboxylate transporter 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: monocarboxylate transporter 12-like
uncharacterized LOC128705033; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128705033
probable chitinase 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
hepatocyte nuclear factor 4-gamma-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-gamma-like
annexin-B12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
corticotropin-releasing factor-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
corticotropin-releasing factor-binding protein-like