Cherax quadricarinatus isolate HC-2022 chromosome 96, ASM2687515v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049290.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128704748; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
four-domain proteases inhibitor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
similar to RNA sequence (same species):INSD:HACK01028428.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 772 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 661 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
crustacean calcium-binding protein 23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
crustacean calcium-binding protein 23-like
similar to RNA sequence (same species):INSD:HACB02088992.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 44 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 1 Protein
ionotropic receptor 93a-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 4 Proteins
uncharacterized LOC128704756; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC128704764; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704764, transcript variant X1
uncharacterized LOC128704764, transcript variant X2
uncharacterized LOC128704751; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704757; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
aldo-keto reductase family 1 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aldo-keto reductase family 1 member A1-like
gastrula zinc finger protein XlCGF57.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastrula zinc finger protein XlCGF57.1-like, transcript variant X7
gastrula zinc finger protein XlCGF57.1-like, transcript variant X5
gastrula zinc finger protein XlCGF57.1-like, transcript variant X6
gastrula zinc finger protein XlCGF57.1-like, transcript variant X3
gastrula zinc finger protein XlCGF57.1-like, transcript variant X1
gastrula zinc finger protein XlCGF57.1-like, transcript variant X2
gastrula zinc finger protein XlCGF57.1-like, transcript variant X10
gastrula zinc finger protein XlCGF57.1-like, transcript variant X4
gastrula zinc finger protein XlCGF57.1-like, transcript variant X8
gastrula zinc finger protein XlCGF57.1-like, transcript variant X9
gastrula zinc finger protein XlCGF57.1-like
tigger transposable element-derived protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
chloride intracellular channel exl-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chloride intracellular channel exl-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
uncharacterized LOC128704760; Derived by automated computational analysis using gene prediction method: Gnomon.
C-type lectin lectoxin-Thr1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACB02055008.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 16 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 16 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
pulmonary surfactant-associated protein D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pulmonary surfactant-associated protein D-like
turripeptide Lol9.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
piggyBac transposable element-derived protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
piggyBac transposable element-derived protein 2-like
uncharacterized LOC128704770; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704771; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional repressor scratch 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional repressor scratch 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 9 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcriptional repressor scratch 2-like
uncharacterized protein PF3D7_1120000-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein PF3D7_1120000-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
zygotic gap protein knirps-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
uncharacterized LOC128704775; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704776; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704776, transcript variant X1
uncharacterized LOC128704776, transcript variant X2
uncharacterized LOC128704776, transcript variant X3
SAP domain-containing ribonucleoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
SAP domain-containing ribonucleoprotein-like
uncharacterized LOC128704735; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase SUV3 homolog, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase SUV3 homolog, mitochondrial-like
glycine N-methyltransferase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate beta-hydroxylase domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate beta-hydroxylase domain-containing protein 2-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
LOW QUALITY PROTEIN: aspartate beta-hydroxylase domain-containing protein 2-like
intraflagellar transport protein 22 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
intraflagellar transport protein 22 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
B9 domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tectonic-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ethylmalonyl-CoA decarboxylase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ethylmalonyl-CoA decarboxylase-like, transcript variant X1
ethylmalonyl-CoA decarboxylase-like, transcript variant X2
oxygen-dependent choline dehydrogenase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
oxygen-dependent choline dehydrogenase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
uncharacterized LOC128704738; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704739; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704788; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704786; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins
RNA 3'-terminal phosphate cyclase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins
mucin-16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 2 Proteins
LIM domain kinase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704791; Derived by automated computational analysis using gene prediction method: Gnomon.
ribosome biogenesis protein SLX9 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
ribosome biogenesis protein SLX9 homolog
kinesin-like protein KIF1C; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704752; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704792; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704742; Derived by automated computational analysis using gene prediction method: Gnomon.
CAP-Gly domain-containing linker protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704753; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704793; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704793, transcript variant X2
uncharacterized LOC128704793, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein
uncharacterized protein LOC128704793 isoform X1
uncharacterized protein LOC128704793 isoform X2
exonuclease GOR-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA exonuclease 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACB02020771.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 478 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 298 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704796; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128704796
testis-expressed protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-like-conjugating enzyme ATG3; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-like-conjugating enzyme ATG3, transcript variant X2
ubiquitin-like-conjugating enzyme ATG3, transcript variant X1
ubiquitin-like-conjugating enzyme ATG3 isoform X2
ubiquitin-like-conjugating enzyme ATG3 isoform X1
transmembrane protein 134-like; Derived by automated computational analysis using gene prediction method: Gnomon.
neurofilament medium polypeptide-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704800; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704801; Derived by automated computational analysis using gene prediction method: Gnomon.
peritrophin-44-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704803; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704806; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
Y+L amino acid transporter 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
U4 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00015
ubiquitin carboxyl-terminal hydrolase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 2-like
uncharacterized LOC128704807; Derived by automated computational analysis using gene prediction method: Gnomon.
39S ribosomal protein L41, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
39S ribosomal protein L41, mitochondrial-like
protein argonaute-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
protein fem-1 homolog B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein fem-1 homolog B-like, transcript variant X1
protein fem-1 homolog B-like, transcript variant X2
uncharacterized LOC128704746; Derived by automated computational analysis using gene prediction method: Gnomon.
inhibin beta B chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein DDB_G0271670-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein DDB_G0271670-like
uncharacterized LOC128704755; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128704755, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads
uncharacterized LOC128704755, transcript variant X1
mitochondrial thiamine pyrophosphate carrier-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial thiamine pyrophosphate carrier-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
mitochondrial thiamine pyrophosphate carrier-like, transcript variant X2
uncharacterized LOC128704813; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial thiamine pyrophosphate carrier-like isoform X2
mitochondrial thiamine pyrophosphate carrier-like isoform X1