Cherax quadricarinatus isolate HC-2022 chromosome 87, ASM2687515v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049281.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##
fragile X messenger ribonucleoprotein 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
fragile X messenger ribonucleoprotein 1 homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
fragile X messenger ribonucleoprotein 1 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
fragile X messenger ribonucleoprotein 1 homolog isoform X1
fragile X messenger ribonucleoprotein 1 homolog isoform X2
small nucleolar RNA snR42; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01265
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128703304; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
clusterin-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 1 Protein
ankyrin repeat domain-containing protein 40-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat domain-containing protein 40-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ankyrin repeat domain-containing protein 40-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 3 Proteins
ankyrin repeat domain-containing protein 40-like, transcript variant X1
ankyrin repeat domain-containing protein 40-like isoform X3
ankyrin repeat domain-containing protein 40-like isoform X1
ankyrin repeat domain-containing protein 40-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads
ankyrin repeat domain-containing protein 40-like isoform X2
ankyrin repeat domain-containing protein 40-like isoform X4
ketimine reductase mu-crystallin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ketimine reductase mu-crystallin-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
ketimine reductase mu-crystallin-like, transcript variant X2
histone-lysine N-methyltransferase 2C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
histone-lysine N-methyltransferase 2C-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
histone-lysine N-methyltransferase 2C-like, transcript variant X1
histone-lysine N-methyltransferase 2C-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
histone-lysine N-methyltransferase 2C-like, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein
histone-lysine N-methyltransferase 2C-like, transcript variant X17
histone-lysine N-methyltransferase 2C-like, transcript variant X8
histone-lysine N-methyltransferase 2C-like, transcript variant X18
histone-lysine N-methyltransferase 2C-like, transcript variant X9
histone-lysine N-methyltransferase 2C-like, transcript variant X11
histone-lysine N-methyltransferase 2C-like, transcript variant X12
histone-lysine N-methyltransferase 2C-like, transcript variant X5
histone-lysine N-methyltransferase 2C-like, transcript variant X14
histone-lysine N-methyltransferase 2C-like, transcript variant X13
histone-lysine N-methyltransferase 2C-like, transcript variant X15
histone-lysine N-methyltransferase 2C-like, transcript variant X6
histone-lysine N-methyltransferase 2C-like, transcript variant X2
histone-lysine N-methyltransferase 2C-like isoform X7
histone-lysine N-methyltransferase 2C-like, transcript variant X4
histone-lysine N-methyltransferase 2C-like, transcript variant X3
histone-lysine N-methyltransferase 2C-like isoform X1
histone-lysine N-methyltransferase 2C-like isoform X4
histone-lysine N-methyltransferase 2C-like isoform X13
histone-lysine N-methyltransferase 2C-like isoform X14
histone-lysine N-methyltransferase 2C-like isoform X5
histone-lysine N-methyltransferase 2C-like isoform X15
histone-lysine N-methyltransferase 2C-like isoform X6
histone-lysine N-methyltransferase 2C-like isoform X8
histone-lysine N-methyltransferase 2C-like isoform X9
histone-lysine N-methyltransferase 2C-like isoform X2
histone-lysine N-methyltransferase 2C-like isoform X11
histone-lysine N-methyltransferase 2C-like isoform X10
histone-lysine N-methyltransferase 2C-like isoform X12
histone-lysine N-methyltransferase 2C-like isoform X3
uncharacterized LOC128703310; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128703310
unconventional myosin-IXb-like; Derived by automated computational analysis using gene prediction method: Gnomon.
unconventional myosin-IXb-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 5 Proteins
unconventional myosin-IXb-like, transcript variant X2
unconventional myosin-IXb-like isoform X1
unconventional myosin-IXb-like isoform X2
facilitated trehalose transporter Tret1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
facilitated trehalose transporter Tret1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins
facilitated trehalose transporter Tret1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins
facilitated trehalose transporter Tret1-like isoform X1
facilitated trehalose transporter Tret1-like, transcript variant X2
facilitated trehalose transporter Tret1-like isoform X2
facilitated trehalose transporter Tret1-like isoform X3
protein bric-a-brac 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein bric-a-brac 2-like, transcript variant X2
protein bric-a-brac 2-like, transcript variant X3
protein bric-a-brac 2-like, transcript variant X1
protein bric-a-brac 2-like, transcript variant X4
uncharacterized protein LOC128703314 isoform X1
phospholipid-transporting ATPase IF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
phospholipid-transporting ATPase IF-like, transcript variant X2
phospholipid-transporting ATPase IF-like, transcript variant X1
phospholipid-transporting ATPase IF-like isoform X2
phospholipid-transporting ATPase IF-like isoform X1
phospholipid-transporting ATPase IF-like, transcript variant X3
phospholipid-transporting ATPase IF-like isoform X3
U-scoloptoxin(11)-Sm6a-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703340; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128703340
uncharacterized LOC128703317; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703317, transcript variant X3
uncharacterized LOC128703317, transcript variant X4
uncharacterized LOC128703317, transcript variant X5
uncharacterized protein LOC128703317 isoform X3
uncharacterized LOC128703317, transcript variant X1
uncharacterized LOC128703317, transcript variant X2
uncharacterized protein LOC128703317 isoform X1
uncharacterized protein LOC128703317 isoform X2
uncharacterized protein LOC128703317 isoform X4
peroxisomal multifunctional enzyme type 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
peroxisomal multifunctional enzyme type 2-like, transcript variant X2
peroxisomal multifunctional enzyme type 2-like, transcript variant X1
peroxisomal multifunctional enzyme type 2-like
probable very-long-chain enoyl-CoA reductase art-1; Derived by automated computational analysis using gene prediction method: Gnomon.
probable very-long-chain enoyl-CoA reductase art-1
U3 small nucleolar ribonucleoprotein protein MPP10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
U3 small nucleolar ribonucleoprotein protein MPP10-like
neuroendocrine convertase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 28 Proteins
ATPase WRNIP1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase WRNIP1-like, transcript variant X1
ATPase WRNIP1-like, transcript variant X2
uncharacterized LOC128703322; Derived by automated computational analysis using gene prediction method: Gnomon.
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703343; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylglycine alpha-hydroxylating monooxygenase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylglycine alpha-hydroxylating monooxygenase-like, transcript variant X1
peptidylglycine alpha-hydroxylating monooxygenase-like, transcript variant X2
peptidylglycine alpha-hydroxylating monooxygenase-like isoform X2
peptidylglycine alpha-hydroxylating monooxygenase-like isoform X1
uncharacterized LOC128703324; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01010113.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1084 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 494 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
poly [ADP-ribose] polymerase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proteasome subunit beta type-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
facilitated trehalose transporter Tret1-like
LOW QUALITY PROTEIN: facilitated trehalose transporter Tret1-like
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC128703327; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 205-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703329; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703347; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
uncharacterized LOC128703348; Derived by automated computational analysis using gene prediction method: Gnomon.
differentially expressed in FDCP 6 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
differentially expressed in FDCP 6 homolog
uncharacterized LOC128703353; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
type-2 ice-structuring protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sphingomyelin phosphodiesterase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sphingomyelin phosphodiesterase-like, transcript variant X1
sphingomyelin phosphodiesterase-like, transcript variant X2
sphingomyelin phosphodiesterase-like isoform X1
sphingomyelin phosphodiesterase-like isoform X2
uncharacterized LOC128703349; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA
peptidyl-prolyl cis-trans isomerase sig-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidyl-prolyl cis-trans isomerase sig-7-like
similar to RNA sequence (same species):INSD:HACB02038677.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 706 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 187 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide transfer protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
perlucin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
src substrate cortactin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
uncharacterized LOC128703350; Derived by automated computational analysis using gene prediction method: Gnomon.
baculoviral IAP repeat-containing protein 8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
baculoviral IAP repeat-containing protein 8-like
uncharacterized LOC128703358; Derived by automated computational analysis using gene prediction method: Gnomon.
innexin inx2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
dnaJ protein homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128703337; Derived by automated computational analysis using gene prediction method: Gnomon.
dnaJ homolog subfamily B member 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
death-associated inhibitor of apoptosis 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
death-associated inhibitor of apoptosis 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
baculoviral IAP repeat-containing protein 7-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
baculoviral IAP repeat-containing protein 7-A-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7-A-like
uncharacterized LOC128703351; Derived by automated computational analysis using gene prediction method: Gnomon.