Cherax quadricarinatus isolate HC-2022 chromosome 72, ASM2687515v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049266.1.\nAssembly name: ASM2687515v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang Academy of\nAgricultural Sciences on 2022/12/14. The original whole-genome\nshotgun project has the accession JAPQEV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang Academy of Agricultural Sciences\nAssembly Method :: wtdbg2 v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 108.71x\nSequencing Technology :: Illumina HiSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026875155.1-RS_2023_01\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 01/17/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128700841; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01044666.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 66 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 66 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700842; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads
Derived by automated computational analysis using gene prediction method: Gnomon.
cytoplasmic tRNA 2-thiolation protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
cytoplasmic tRNA 2-thiolation protein 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cytoplasmic tRNA 2-thiolation protein 1-like
copine-9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
GPN-loop GTPase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: GPN-loop GTPase 3-like
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC128700896; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA (guanine(6)-N2)-methyltransferase THUMP3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA (guanine(6)-N2)-methyltransferase THUMP3-like
uncharacterized LOC128700848; Derived by automated computational analysis using gene prediction method: Gnomon.
brain protein I3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
brain protein I3-like, transcript variant X1
uncharacterized protein LOC128700850 isoform X1
brain protein I3-like, transcript variant X2
brain protein I3-like, transcript variant X3
uncharacterized protein LOC128700849 isoform X1
uncharacterized protein LOC128700849 isoform X2
uncharacterized LOC128700851; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
E3 ubiquitin-protein ligase TRAIP-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC128700852; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700852, transcript variant X1
uncharacterized LOC128700852, transcript variant X3
uncharacterized LOC128700852, transcript variant X2
uncharacterized LOC128700854; Derived by automated computational analysis using gene prediction method: Gnomon.
PAX-interacting protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
acylglycerol kinase, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
acylglycerol kinase, mitochondrial-like, transcript variant X1
acylglycerol kinase, mitochondrial-like, transcript variant X3
acylglycerol kinase, mitochondrial-like, transcript variant X2
acylglycerol kinase, mitochondrial-like isoform X1
acylglycerol kinase, mitochondrial-like isoform X2
uncharacterized LOC128700904; Derived by automated computational analysis using gene prediction method: Gnomon.
trypsin I-P1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
serine protease 30-like; Derived by automated computational analysis using gene prediction method: Gnomon.
copine-8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01021705.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 672 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 672 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 620 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like
similar to RNA sequence (same species):INSD:HACK01041969.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 512 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 422 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
protein ecdysoneless homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACK01011505.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 88 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; added 88 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein ecdysoneless homolog
lipoyltransferase 1, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: lipoyltransferase 1, mitochondrial-like
uncharacterized LOC128700899; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins
uncharacterized LOC128700900; Derived by automated computational analysis using gene prediction method: Gnomon.
tigger transposable element-derived protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
sterol O-acyltransferase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: sterol O-acyltransferase 1-like
protein lethal(2)essential for life-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein lethal(2)essential for life-like
dynein light chain 1, cytoplasmic; Derived by automated computational analysis using gene prediction method: Gnomon.
dynein light chain 1, cytoplasmic, transcript variant X3
dynein light chain 1, cytoplasmic, transcript variant X1
dynein light chain 1, cytoplasmic, transcript variant X2
dynein light chain 1, cytoplasmic isoform X1
dynein light chain 1, cytoplasmic isoform X2
U11 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00548
Derived by automated computational analysis using gene prediction method: cmsearch.
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00001
uncharacterized LOC128700865; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700865, transcript variant X3
uncharacterized LOC128700865, transcript variant X1
uncharacterized LOC128700865, transcript variant X2
glutathione S-transferase 1-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
protein embryonic gonad-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins
LOW QUALITY PROTEIN: protein embryonic gonad-like
probable basic-leucine zipper transcription factor N; Derived by automated computational analysis using gene prediction method: Gnomon.
probable basic-leucine zipper transcription factor N
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC128700874; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700872; Derived by automated computational analysis using gene prediction method: Gnomon.
protein hunchback-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 long SRA reads, 7 Proteins
uncharacterized LOC128700869; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC128700867; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700868; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700868, transcript variant X1
uncharacterized protein LOC128700868 isoform X1
uncharacterized LOC128700868, transcript variant X4
uncharacterized LOC128700868, transcript variant X2
uncharacterized LOC128700868, transcript variant X6
uncharacterized LOC128700868, transcript variant X5
uncharacterized LOC128700868, transcript variant X3
uncharacterized protein LOC128700868 isoform X2
uncharacterized LOC128700902; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700903; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
ribonuclease H2 subunit B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ribonuclease H2 subunit B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
ribonuclease H2 subunit B-like, transcript variant X2
ribonuclease H2 subunit B-like, transcript variant X4
ribonuclease H2 subunit B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 5 Proteins
ribonuclease H2 subunit B-like isoform X1
ribonuclease H2 subunit B-like isoform X2
ribonuclease H2 subunit B-like isoform X4
ribonuclease H2 subunit B-like isoform X3
CCAAT/enhancer-binding protein gamma-like; Derived by automated computational analysis using gene prediction method: Gnomon.
CCAAT/enhancer-binding protein gamma-like, transcript variant X4
CCAAT/enhancer-binding protein gamma-like, transcript variant X2
CCAAT/enhancer-binding protein gamma-like, transcript variant X3
CCAAT/enhancer-binding protein gamma-like
CCAAT/enhancer-binding protein gamma-like, transcript variant X1
aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like
DNA (cytosine-5)-methyltransferase 3A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X2
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X5
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads
uncharacterized protein LOC128700877 isoform X2
uncharacterized protein LOC128700877 isoform X1
uncharacterized protein LOC128700877 isoform X5
uncharacterized protein LOC128700877 isoform X6
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X4
DNA (cytosine-5)-methyltransferase 3A-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized protein LOC128700877 isoform X4
DNA (cytosine-5)-methyltransferase 3A-like isoform X3
cytochrome b-c1 complex subunit 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700911; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
galactoside 2-alpha-L-fucosyltransferase SEC1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
galactoside 2-alpha-L-fucosyltransferase SEC1-like
galactoside alpha-(1,2)-fucosyltransferase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
galactoside alpha-(1,2)-fucosyltransferase 1-like, transcript variant X1
galactoside alpha-(1,2)-fucosyltransferase 1-like, transcript variant X3
galactoside alpha-(1,2)-fucosyltransferase 2-like isoform X1
galactoside alpha-(1,2)-fucosyltransferase 1-like, transcript variant X2
galactoside alpha-(1,2)-fucosyltransferase 2-like isoform X2
galactoside alpha-(1,2)-fucosyltransferase 1-like isoform X3
DBH-like monooxygenase protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 5 Proteins
putative uncharacterized protein DDB_G0271606; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 268-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 268-like, transcript variant X3
zinc finger protein 268-like, transcript variant X1
zinc finger protein 268-like, transcript variant X2
zinc finger protein 84-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 300-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700914; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700889; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X8
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X10
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X11
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X5
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X2
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X1
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X6
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X7
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X3
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X4
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X9
cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X12
cytoplasmic tRNA 2-thiolation protein 1-like isoform X4
cytoplasmic tRNA 2-thiolation protein 1-like isoform X2
cytoplasmic tRNA 2-thiolation protein 1-like isoform X5
cytoplasmic tRNA 2-thiolation protein 1-like isoform X3
cytoplasmic tRNA 2-thiolation protein 1-like isoform X1
cytoplasmic tRNA 2-thiolation protein 1-like isoform X6
uncharacterized LOC128700908; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence (same species):INSD:HACB02060219.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 70 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 70 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700916; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700909; Derived by automated computational analysis using gene prediction method: Gnomon.
axoneme-associated protein mst101(2)-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128700917; Derived by automated computational analysis using gene prediction method: Gnomon.