Chitinibacter bivalviorum strain 2T18 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chitinibacter.
Complete genome sequence of Chitinibacter sp. 2T18
Submitted (06-JUL-2020) Biology, Kyung Hee University, 26-6 Kyungheedae-ro, Seoul 02453, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP058630.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209.13x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:38:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,499\nCDSs (total) :: 3,393\nGenes (coding) :: 3,359\nCDSs (with protein) :: 3,359\nGenes (RNA) :: 106\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 7 of 34\nPseudo Genes (incomplete) :: 28 of 34\nPseudo Genes (internal stop) :: 2 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Chitinibacter bivalviorum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013155.2
GO:0004000 - adenosine deaminase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020651979.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: similar to AA sequence:RefSeq:WP_014087043.1
COORDINATES: protein motif:HMM:NF023739.2
exonuclease SbcCD subunit D C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008906665.1
COORDINATES: similar to AA sequence:RefSeq:WP_013104779.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001029679.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
heteromeric transposase endonuclease subunit TnsA
COORDINATES: similar to AA sequence:RefSeq:WP_011000145.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_007639613.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF014609.2
GO:0016853 - isomerase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_013028407.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF000755.0
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018988187.1
undecaprenyl-phosphate glucose phosphotransferase
COORDINATES: protein motif:HMM:NF022007.2