Chitinibacter bivalviorum strain 2T18 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chitinibacter.
Complete genome sequence of Chitinibacter sp. 2T18
Submitted (06-JUL-2020) Biology, Kyung Hee University, 26-6 Kyungheedae-ro, Seoul 02453, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP058629.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209.13x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:38:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,499\nCDSs (total) :: 3,393\nGenes (coding) :: 3,359\nCDSs (with protein) :: 3,359\nGenes (RNA) :: 106\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 7 of 34\nPseudo Genes (incomplete) :: 28 of 34\nPseudo Genes (internal stop) :: 2 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Chitinibacter bivalviorum
COORDINATES: similar to AA sequence:RefSeq:WP_018413495.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013124613.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013262378.1
COORDINATES: protein motif:HMM:NF037735.2
COORDINATES: similar to AA sequence:RefSeq:WP_020656645.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017452571.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013124610.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002813009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443749.1
COORDINATES: similar to AA sequence:RefSeq:WP_018746196.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018746197.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009467802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124593.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413464.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_014003869.1
COORDINATES: similar to AA sequence:RefSeq:WP_009873357.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413461.1
COORDINATES: similar to AA sequence:RefSeq:WP_009873359.1
COORDINATES: similar to AA sequence:RefSeq:WP_009873360.1
COORDINATES: similar to AA sequence:RefSeq:WP_000015696.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005291943.1
COORDINATES: similar to AA sequence:RefSeq:WP_001297013.1
tetracycline efflux MFS transporter Tet(C)
COORDINATES: similar to AA sequence:RefSeq:WP_001038045.1
tetracycline resistance transcriptional repressor TetR
COORDINATES: similar to AA sequence:RefSeq:WP_032492145.1
aminoglycoside O-phosphotransferase APH(3')-Ia
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_013124620.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413498.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124615.1