Chitinibacter bivalviorum strain 2T18 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chitinibacter.
Complete genome sequence of Chitinibacter sp. 2T18
Submitted (06-JUL-2020) Biology, Kyung Hee University, 26-6 Kyungheedae-ro, Seoul 02453, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP058628.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209.13x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:38:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,499\nCDSs (total) :: 3,393\nGenes (coding) :: 3,359\nCDSs (with protein) :: 3,359\nGenes (RNA) :: 106\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 7 of 34\nPseudo Genes (incomplete) :: 28 of 34\nPseudo Genes (internal stop) :: 2 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Chitinibacter bivalviorum
COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
tetracycline resistance transcriptional repressor TetR(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: protein motif:HMM:NF028103.2
COORDINATES: protein motif:HMM:NF036929.2
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013123754.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
COORDINATES: similar to AA sequence:RefSeq:WP_012637485.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173678.1
COORDINATES: similar to AA sequence:RefSeq:WP_020750543.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_017154717.1
COORDINATES: similar to AA sequence:RefSeq:WP_003159116.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001082279.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005221012.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024917.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
tetracycline efflux MFS transporter Tet(A)
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008168803.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.