Chitinibacter bivalviorum strain 2T18 plasmid unnamed2, complete sequence.
type: Entry
definition: Chitinibacter bivalviorum strain 2T18 plasmid unnamed2, complete sequence.
sequence version: NZ_CP058628.1
sequence date: 2023-05-06
sequence: sequence
division: CON
label: NZ_CP058628.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15030392
keyword: RefSeq
source: Chitinibacter bivalviorum
organism: Chitinibacter bivalviorum
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chitinibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP058628.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209.13x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:38:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,499\nCDSs (total) :: 3,393\nGenes (coding) :: 3,359\nCDSs (with protein) :: 3,359\nGenes (RNA) :: 106\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 7 of 34\nPseudo Genes (incomplete) :: 28 of 34\nPseudo Genes (internal stop) :: 2 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 42950
topology: linear
so has quality: SO_0000987
location: 1..42950
location: region:1-42950:1
RO_0002162: 2739434

NZ_CP058628
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15030392
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Chitinibacter sp. 2T18
author: Bae, J.-W.
author: Choi, J.-W.
journal: Unpublished

2
title: Direct Submission
author: Bae, J.-W.
author: Choi, J.-W.
journal: Submitted (06-JUL-2020) Biology, Kyung Hee University, 26-6 Kyungheedae-ro, Seoul 02453, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:42950:1
position: 42950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-42950:1:source
so part of: sequence
organism: Chitinibacter bivalviorum
mol type: genomic DNA
strain: 2T18
host: Anodonta arcaeformis
type material: type strain of Chitinibacter bivalviorum
plasmid: unnamed2
country: South Korea
collection date: 2019-06

2739434
type: Taxonomy
SIO_000068: taxonomy

HQ393_RS16820
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS16820
old locus tag: HQ393_16820
so part of: sequence
location: <1..483
location: region:1-483:1
so has part: feature:1-483:1:exon
subclass of: SO_0000010

position:483:1
position: 483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-483:1:exon

HQ393_RS16820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS16820
old locus tag: HQ393_16820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(A)
translation: EAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
SIO_010081: HQ393_RS16820
subclass of: SO_0000673
so part of: HQ393_RS16820
location: <1..483
location: region:1-483:1
so has part: feature:1-483:1:exon

WP_079955019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-483:1:exon

HQ393_RS16825
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16825
old locus tag: HQ393_16825
so part of: sequence
location: complement(515..757)
location: region:515-757:-1
so has part: feature:515-757:-1:exon
subclass of: SO_0000010

position:515:-1
position: 515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:757:-1
position: 757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515-757:-1:exon

HQ393_RS16825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16825
old locus tag: HQ393_16825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
SIO_010081: HQ393_RS16825
subclass of: SO_0000673
so part of: HQ393_RS16825
location: complement(515..757)
location: region:515-757:-1
so has part: feature:515-757:-1:exon

WP_000844627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:515-757:-1:exon

HQ393_RS16830
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16830
old locus tag: HQ393_16830
so part of: sequence
location: complement(991..1557)
location: region:991-1557:-1
so has part: feature:991-1557:-1:exon
subclass of: SO_0000010

position:991:-1
position: 991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1557:-1
position: 1557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991-1557:-1:exon

HQ393_RS16830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16830
old locus tag: HQ393_16830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS16830
subclass of: SO_0000673
so part of: HQ393_RS16830
location: complement(991..1557)
location: region:991-1557:-1
so has part: feature:991-1557:-1:exon

WP_003159185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:991-1557:-1:exon

HQ393_RS16835
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16835
old locus tag: HQ393_16835
so part of: sequence
location: complement(1686..1934)
location: region:1686-1934:-1
so has part: feature:1686-1934:-1:exon
subclass of: SO_0000010

position:1686:-1
position: 1686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1934:-1
position: 1934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1686-1934:-1:exon

HQ393_RS16835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16835
old locus tag: HQ393_16835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS16835
subclass of: SO_0000673
so part of: HQ393_RS16835
location: complement(1686..1934)
location: region:1686-1934:-1
so has part: feature:1686-1934:-1:exon

WP_012585400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1686-1934:-1:exon

HQ393_RS17775
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17775
old locus tag: HQ393_16840
so part of: sequence
location: complement(2020..2943)
location: region:2020-2943:-1
so has part: feature:2020-2943:-1:exon
subclass of: SO_0000010

position:2020:-1
position: 2020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2943:-1
position: 2943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2020-2943:-1:exon

HQ393_RS17775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17775
old locus tag: HQ393_16840
inference: COORDINATES: protein motif:HMM:NF028103.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family DNA primase
translation: MTALDVPRFEVGIREAKTGQMMNREWSRAELEQSAAWLKRMNAKGNDVYIRPAGEHGLVLVDDLKPQALERMKAEGFAPAATIETSPGNYQAWVKLSDKPLSADVRRIAAQGLAKQYGGDSRHYGRLAGFTNQKPQHARDGRQPYVLAHDCPGKAARSAPSYLERIEQHLDRAAAQQEREKRLEALETAKPGGYGSQYDPVKEYQRQAQRLMQRYGKEADFSRLDWMIATDMAKSGRFTAQDIEKGILECSPHVESRKAGHVEDYARRTAANAWAAPEVQAHRQEQEQERERQAQRSRDRDGPGMIR
SIO_010081: HQ393_RS17775
subclass of: SO_0000673
so part of: HQ393_RS17775
location: complement(2020..2943)
location: region:2020-2943:-1
so has part: feature:2020-2943:-1:exon

WP_008168803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2020-2943:-1:exon

HQ393_RS17780
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17780
old locus tag: HQ393_16845
so part of: sequence
location: complement(2940..3440)
location: region:2940-3440:-1
so has part: feature:2940-3440:-1:exon
subclass of: SO_0000010

position:2940:-1
position: 2940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3440:-1
position: 3440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2940-3440:-1:exon

HQ393_RS17780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17780
old locus tag: HQ393_16845
inference: COORDINATES: protein motif:HMM:NF036929.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IncQ-type mobilization protein MobB
translation: MSKTETLRQSAAASNETRLERLASQIETVRQAKHQSAEDLAATLEPLAQAMAALADETRQTLAEIDRKSREQGETFTRQLSESVKGYKDAVAAASQAAESLNQAGQRMEWRHYGLAVVTGLVTAALVSGFWLWLAPPKVQNMLDAQAVAEYLKPAVIEALKPSRGR
SIO_010081: HQ393_RS17780
subclass of: SO_0000673
so part of: HQ393_RS17780
location: complement(2940..3440)
location: region:2940-3440:-1
so has part: feature:2940-3440:-1:exon

WP_008168805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2940-3440:-1:exon

HQ393_RS17785
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17785
old locus tag: HQ393_16850
pseudo: true
so part of: sequence
location: complement(<3463..4170)
location: region:3463-4170:-1
so has part: feature:3463-4170:-1:exon
subclass of: SO_0000010

position:3463:-1
position: 3463
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4170:-1
position: 4170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3463-4170:-1:exon

HQ393_RS17785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17785
old locus tag: HQ393_16850
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: HQ393_RS17785
subclass of: SO_0000673
so part of: HQ393_RS17785
location: complement(<3463..4170)
location: region:3463-4170:-1
so has part: feature:3463-4170:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3463-4170:-1:exon

HQ393_RS16855
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16855
old locus tag: HQ393_16855
so part of: sequence
location: complement(4179..4565)
location: region:4179-4565:-1
so has part: feature:4179-4565:-1:exon
subclass of: SO_0000010

position:4179:-1
position: 4179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4565:-1
position: 4565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4179-4565:-1:exon

HQ393_RS16855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16855
old locus tag: HQ393_16855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013123754.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MTAETTPPRKGRGGRPKGDPSAVRASTIGVRVSAEEYAALRAKADQMGMTPAQWLREAALSRRLPSPPVPPINREQYAELARLAANLNQLTRLANEGRPVTVADALLQRLAGEVGRLRLALIGAGGGE
SIO_010081: HQ393_RS16855
subclass of: SO_0000673
so part of: HQ393_RS16855
location: complement(4179..4565)
location: region:4179-4565:-1
so has part: feature:4179-4565:-1:exon

WP_008168810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4179-4565:-1:exon

HQ393_RS16860
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16860
old locus tag: HQ393_16860
so part of: sequence
location: complement(4711..5604)
location: region:4711-5604:-1
so has part: feature:4711-5604:-1:exon
subclass of: SO_0000010

position:4711:-1
position: 4711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5604:-1
position: 5604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4711-5604:-1:exon

HQ393_RS16860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16860
old locus tag: HQ393_16860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MARQGITFEQVAAVADALAGEGQQPTIRAVRERLGDTGSPNTIHKHLAAWREARPVAAAAAPELPQALTAAIAAEIERAASRARGEIEGRLVQAQAEAAELAAAGEVLEDERDELAEQVAVLTTERDTLAGKAAQQAADLAEAQQRIEREQQAAESARLEVATARHKIEAQAERVSEQAAELVRLRAALAEAQQGRTAAEQQAAVLAAKLEACADRVSRAEARAEQIEQQAAKAAQAHDTARAAAAQETRQAQAERDEARKVAAEAREQAARLAGQLEALRKADPVPAVFPPASTGV
SIO_010081: HQ393_RS16860
subclass of: SO_0000673
so part of: HQ393_RS16860
location: complement(4711..5604)
location: region:4711-5604:-1
so has part: feature:4711-5604:-1:exon

WP_008168811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4711-5604:-1:exon

HQ393_RS16865
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16865
old locus tag: HQ393_16865
so part of: sequence
location: complement(6120..6419)
location: region:6120-6419:-1
so has part: feature:6120-6419:-1:exon
subclass of: SO_0000010

position:6120:-1
position: 6120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6419:-1
position: 6419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6120-6419:-1:exon

HQ393_RS16865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16865
old locus tag: HQ393_16865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012637485.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRARRSFPPALLDSLRAMTVQETLDRLGLYWKRDPGFVPVKDKATVRLNVSIGGGGVELLATGPKWYDTRKEQGGGAIDLAMHLFRLSFVDAVKRLSP
SIO_010081: HQ393_RS16865
subclass of: SO_0000673
so part of: HQ393_RS16865
location: complement(6120..6419)
location: region:6120-6419:-1
so has part: feature:6120-6419:-1:exon

WP_023277449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6120-6419:-1:exon

HQ393_RS16870
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16870
old locus tag: HQ393_16870
so part of: sequence
location: complement(6682..8088)
location: region:6682-8088:-1
so has part: feature:6682-8088:-1:exon
subclass of: SO_0000010

position:6682:-1
position: 6682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8088:-1
position: 8088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6682-8088:-1:exon

HQ393_RS16870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16870
old locus tag: HQ393_16870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017173678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MGQAQLRLFSPADEAGCYHDTARQGFFSLLMATGEGSGKKQDSYRLSQMPVVLSMLDHSRDTWLSQAEFIKPNRRVVNLARIGLLFADLDTYREPWAQGRSPEQLAAAVMFRCYDEGVPPPSILVFSGRGVQAKWLLDGTLPRQALPRWNACQRYLIDRLAGLGADPAAKDASRVLRLVNTVNSKSGEVCRVIHVELGPDGEPIRYNFEYLAEALLPVARWDIEADRKARADRRQFKLLPGGQTGNLRTLNGRQLAWDRLEDLRTLAALRGGVAEGERMQHLFWRLNFLLLSGATHTGQMYHEAAALARELDPRWNYRSAELMTLYAKAKAHEAGEKVEFGGKQFAPLYTPKNDTLISLFHITDDEQRKLRTLISRDMAAERHSEREKARRRAAGAVDRASYLEAASAKQAQALALKAQGLSVRAIAAQMGISKTAAGRYIAEPGECPKSMRITNGEAYARRVAPAFE
SIO_010081: HQ393_RS16870
subclass of: SO_0000673
so part of: HQ393_RS16870
location: complement(6682..8088)
location: region:6682-8088:-1
so has part: feature:6682-8088:-1:exon

WP_052183938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6682-8088:-1:exon

HQ393_RS16875
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS16875
old locus tag: HQ393_16875
so part of: sequence
location: complement(8254..8640)
location: region:8254-8640:-1
so has part: feature:8254-8640:-1:exon
subclass of: SO_0000010

position:8254:-1
position: 8254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8640:-1
position: 8640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8254-8640:-1:exon

HQ393_RS16875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS16875
old locus tag: HQ393_16875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParC family partition-associated protein
translation: MDYSPYIFDLAKFNNVDEIRRVGYKVMVEMEPLSLEVLPPSHFKAFAKNAPHEIKGAVIENTERGLVIVLHVGNERRILGQYRGGIRFFRSFDGAAAVLRQHGVLHWTANAKGWIPRTLEAKERSSDG
SIO_010081: HQ393_RS16875
subclass of: SO_0000673
so part of: HQ393_RS16875
location: complement(8254..8640)
location: region:8254-8640:-1
so has part: feature:8254-8640:-1:exon

WP_011270177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8254-8640:-1:exon

HQ393_RS16880
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16880
old locus tag: HQ393_16880
so part of: sequence
location: complement(8674..8895)
location: region:8674-8895:-1
so has part: feature:8674-8895:-1:exon
subclass of: SO_0000010

position:8674:-1
position: 8674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8895:-1
position: 8895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8674-8895:-1:exon

HQ393_RS16880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16880
old locus tag: HQ393_16880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MSSGKLGMKAGRPSAAKAGPTLSDLADKAATVRVNFDLDRAEHTKLKIYAAKTGRSITDILRELVRSLDEKSD
SIO_010081: HQ393_RS16880
subclass of: SO_0000673
so part of: HQ393_RS16880
location: complement(8674..8895)
location: region:8674-8895:-1
so has part: feature:8674-8895:-1:exon

WP_011178357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8674-8895:-1:exon

HQ393_RS16885
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS16885
old locus tag: HQ393_16885
so part of: sequence
location: complement(8917..9555)
location: region:8917-9555:-1
so has part: feature:8917-9555:-1:exon
subclass of: SO_0000010

position:8917:-1
position: 8917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9555:-1
position: 9555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8917-9555:-1:exon

HQ393_RS16885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS16885
old locus tag: HQ393_16885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159116.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MQVIAVLNQKGGAGKTTIATHLARALQLDGADVLLVDSDPQGSARDWAAVREDQPVPVVGIDRPTIERDLKSVARKDFVVIDGAPQAHDLAVSAMKAADCVLIPVQPSPYDIWATSDLVDLVKQRIELTDGKLKAAFVVSRAIKGTKIGAEVSEALAGYGLPILQTRITQRVIYPSSAASGTTAIDQEPTSEAAEEIRALAEEVRRFLNCTI
SIO_010081: HQ393_RS16885
subclass of: SO_0000673
so part of: HQ393_RS16885
location: complement(8917..9555)
location: region:8917-9555:-1
so has part: feature:8917-9555:-1:exon

WP_008166580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8917-9555:-1:exon

HQ393_RS16890
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16890
old locus tag: HQ393_16890
so part of: sequence
location: complement(9710..9850)
location: region:9710-9850:-1
so has part: feature:9710-9850:-1:exon
subclass of: SO_0000010

position:9710:-1
position: 9710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9850:-1
position: 9850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9710-9850:-1:exon

HQ393_RS16890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16890
old locus tag: HQ393_16890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQELERRATSIVQALDDATLEAIAAGTLDMLAMCRQVADEIHQAA
SIO_010081: HQ393_RS16890
subclass of: SO_0000673
so part of: HQ393_RS16890
location: complement(9710..9850)
location: region:9710-9850:-1
so has part: feature:9710-9850:-1:exon

WP_156143128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9710-9850:-1:exon

HQ393_RS16895
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16895
old locus tag: HQ393_16895
so part of: sequence
location: 9895..10143
location: region:9895-10143:1
so has part: feature:9895-10143:1:exon
subclass of: SO_0000010

position:9895:1
position: 9895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10143:1
position: 10143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10143:1:exon

HQ393_RS16895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16895
old locus tag: HQ393_16895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS16895
subclass of: SO_0000673
so part of: HQ393_RS16895
location: 9895..10143
location: region:9895-10143:1
so has part: feature:9895-10143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10143:1:exon

HQ393_RS16900
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16900
old locus tag: HQ393_16900
so part of: sequence
location: 10272..10838
location: region:10272-10838:1
so has part: feature:10272-10838:1:exon
subclass of: SO_0000010

position:10272:1
position: 10272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10838:1
position: 10838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10272-10838:1:exon

HQ393_RS16900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16900
old locus tag: HQ393_16900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS16900
subclass of: SO_0000673
so part of: HQ393_RS16900
location: 10272..10838
location: region:10272-10838:1
so has part: feature:10272-10838:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10272-10838:1:exon

HQ393_RS16905
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS16905
old locus tag: HQ393_16905
pseudo: true
so part of: sequence
location: <10869..11498
location: region:10869-11498:1
so has part: feature:10869-11498:1:exon
subclass of: SO_0000010

position:10869:1
position: 10869
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11498:1
position: 11498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10869-11498:1:exon

HQ393_RS16905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS16905
old locus tag: HQ393_16905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001082279.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
SIO_010081: HQ393_RS16905
subclass of: SO_0000673
so part of: HQ393_RS16905
location: <10869..11498
location: region:10869-11498:1
so has part: feature:10869-11498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10869-11498:1:exon

HQ393_RS17790
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17790
pseudo: true
so part of: sequence
location: <11518..>11589
location: region:11518-11589:1
so has part: feature:11518-11589:1:exon
subclass of: SO_0000010

position:11518:1
position: 11518
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11589:1
position: 11589
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11518-11589:1:exon

HQ393_RS17790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17790
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221012.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
SIO_010081: HQ393_RS17790
subclass of: SO_0000673
so part of: HQ393_RS17790
location: <11518..>11589
location: region:11518-11589:1
so has part: feature:11518-11589:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11518-11589:1:exon

HQ393_RS16910
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16910
old locus tag: HQ393_16910
so part of: sequence
location: 11663..12130
location: region:11663-12130:1
so has part: feature:11663-12130:1:exon
subclass of: SO_0000010

position:11663:1
position: 11663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12130:1
position: 12130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11663-12130:1:exon

HQ393_RS16910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16910
old locus tag: HQ393_16910
inference: COORDINATES: protein motif:HMM:NF024917.2
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MIKAQIRRLGAADVQDFREIRLSALKKAPEMFGSVYEHEEKKPMEAFAERLRDAVAFGAYIDGEIIGLSVFKQEDGPKDAHKAHLSGVFVEPEQRGRGVAGMLLRAVIDYGREHVEQIMLTVAEGNEAAINLYQRSARCPAPLQSPRRSAGRQSK
SIO_010081: HQ393_RS16910
subclass of: SO_0000673
so part of: HQ393_RS16910
location: 11663..12130
location: region:11663-12130:1
so has part: feature:11663-12130:1:exon

WP_223155915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11663-12130:1:exon

HQ393_RS16915
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS16915
old locus tag: HQ393_16915
so part of: sequence
location: complement(12061..13260)
location: region:12061-13260:-1
so has part: feature:12061-13260:-1:exon
subclass of: SO_0000010

position:12061:-1
position: 12061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13260:-1
position: 13260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12061-13260:-1:exon

HQ393_RS16915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS16915
old locus tag: HQ393_16915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(A)
translation: MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
SIO_010081: HQ393_RS16915
subclass of: SO_0000673
so part of: HQ393_RS16915
location: complement(12061..13260)
location: region:12061-13260:-1
so has part: feature:12061-13260:-1:exon

WP_000804064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12061-13260:-1:exon

HQ393_RS16920
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS16920
old locus tag: HQ393_16920
so part of: sequence
location: 13366..14016
location: region:13366-14016:1
so has part: feature:13366-14016:1:exon
subclass of: SO_0000010

position:13366:1
position: 13366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14016:1
position: 14016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13366-14016:1:exon

HQ393_RS16920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS16920
old locus tag: HQ393_16920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(A)
translation: MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
SIO_010081: HQ393_RS16920
subclass of: SO_0000673
so part of: HQ393_RS16920
location: 13366..14016
location: region:13366-14016:1
so has part: feature:13366-14016:1:exon

WP_000164043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13366-14016:1:exon

HQ393_RS16925
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16925
old locus tag: HQ393_16925
so part of: sequence
location: complement(14048..14290)
location: region:14048-14290:-1
so has part: feature:14048-14290:-1:exon
subclass of: SO_0000010

position:14048:-1
position: 14048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14290:-1
position: 14290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14048-14290:-1:exon

HQ393_RS16925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16925
old locus tag: HQ393_16925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
SIO_010081: HQ393_RS16925
subclass of: SO_0000673
so part of: HQ393_RS16925
location: complement(14048..14290)
location: region:14048-14290:-1
so has part: feature:14048-14290:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14048-14290:-1:exon

HQ393_RS16930
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16930
old locus tag: HQ393_16930
so part of: sequence
location: complement(14524..15090)
location: region:14524-15090:-1
so has part: feature:14524-15090:-1:exon
subclass of: SO_0000010

position:14524:-1
position: 14524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15090:-1
position: 15090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14524-15090:-1:exon

HQ393_RS16930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16930
old locus tag: HQ393_16930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS16930
subclass of: SO_0000673
so part of: HQ393_RS16930
location: complement(14524..15090)
location: region:14524-15090:-1
so has part: feature:14524-15090:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14524-15090:-1:exon

HQ393_RS16935
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16935
old locus tag: HQ393_16935
so part of: sequence
location: complement(15219..15467)
location: region:15219-15467:-1
so has part: feature:15219-15467:-1:exon
subclass of: SO_0000010

position:15219:-1
position: 15219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15467:-1
position: 15467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15219-15467:-1:exon

HQ393_RS16935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16935
old locus tag: HQ393_16935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS16935
subclass of: SO_0000673
so part of: HQ393_RS16935
location: complement(15219..15467)
location: region:15219-15467:-1
so has part: feature:15219-15467:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15219-15467:-1:exon

HQ393_RS17795
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17795
old locus tag: HQ393_16940
so part of: sequence
location: complement(15553..16476)
location: region:15553-16476:-1
so has part: feature:15553-16476:-1:exon
subclass of: SO_0000010

position:15553:-1
position: 15553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16476:-1
position: 16476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15553-16476:-1:exon

HQ393_RS17795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17795
old locus tag: HQ393_16940
inference: COORDINATES: protein motif:HMM:NF028103.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family DNA primase
translation: MTALDVPRFEVGIREAKTGQMMNREWSRAELEQSAAWLKRMNAKGNDVYIRPAGEHGLVLVDDLKPQALERMKAEGFAPAATIETSPGNYQAWVKLSDKPLSADVRRIAAQGLAKQYGGDSRHYGRLAGFTNQKPQHARDGRQPYVLAHDCPGKAARSAPSYLERIEQHLDRAAAQQEREKRLEALETAKPGGYGSQYDPVKEYQRQAQRLMQRYGKEADFSRLDWMIATDMAKSGRFTAQDIEKGILECSPHVESRKAGHVEDYARRTAANAWAAPEVQAHRQEQEQERERQAQRSRDRDGPGMIR
SIO_010081: HQ393_RS17795
subclass of: SO_0000673
so part of: HQ393_RS17795
location: complement(15553..16476)
location: region:15553-16476:-1
so has part: feature:15553-16476:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15553-16476:-1:exon

HQ393_RS17800
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17800
old locus tag: HQ393_16945
so part of: sequence
location: complement(16473..16973)
location: region:16473-16973:-1
so has part: feature:16473-16973:-1:exon
subclass of: SO_0000010

position:16473:-1
position: 16473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16973:-1
position: 16973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16473-16973:-1:exon

HQ393_RS17800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17800
old locus tag: HQ393_16945
inference: COORDINATES: protein motif:HMM:NF036929.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IncQ-type mobilization protein MobB
translation: MSKTETLRQSAAASNETRLERLASQIETVRQAKHQSAEDLAATLEPLAQAMAALADETRQTLAEIDRKSREQGETFTRQLSESVKGYKDAVAAASQAAESLNQAGQRMEWRHYGLAVVTGLVTAALVSGFWLWLAPPKVQNMLDAQAVAEYLKPAVIEALKPSRGR
SIO_010081: HQ393_RS17800
subclass of: SO_0000673
so part of: HQ393_RS17800
location: complement(16473..16973)
location: region:16473-16973:-1
so has part: feature:16473-16973:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16473-16973:-1:exon

HQ393_RS17805
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17805
old locus tag: HQ393_16950
pseudo: true
so part of: sequence
location: complement(<16996..17703)
location: region:16996-17703:-1
so has part: feature:16996-17703:-1:exon
subclass of: SO_0000010

position:16996:-1
position: 16996
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17703:-1
position: 17703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16996-17703:-1:exon

HQ393_RS17805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17805
old locus tag: HQ393_16950
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: HQ393_RS17805
subclass of: SO_0000673
so part of: HQ393_RS17805
location: complement(<16996..17703)
location: region:16996-17703:-1
so has part: feature:16996-17703:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16996-17703:-1:exon

HQ393_RS16955
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16955
old locus tag: HQ393_16955
so part of: sequence
location: complement(17712..18098)
location: region:17712-18098:-1
so has part: feature:17712-18098:-1:exon
subclass of: SO_0000010

position:17712:-1
position: 17712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18098:-1
position: 18098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17712-18098:-1:exon

HQ393_RS16955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16955
old locus tag: HQ393_16955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013123754.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MTAETTPPRKGRGGRPKGDPSAVRASTIGVRVSAEEYAALRAKADQMGMTPAQWLREAALSRRLPSPPVPPINREQYAELARLAANLNQLTRLANEGRPVTVADALLQRLAGEVGRLRLALIGAGGGE
SIO_010081: HQ393_RS16955
subclass of: SO_0000673
so part of: HQ393_RS16955
location: complement(17712..18098)
location: region:17712-18098:-1
so has part: feature:17712-18098:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17712-18098:-1:exon

HQ393_RS16960
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16960
old locus tag: HQ393_16960
so part of: sequence
location: complement(18244..19137)
location: region:18244-19137:-1
so has part: feature:18244-19137:-1:exon
subclass of: SO_0000010

position:18244:-1
position: 18244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19137:-1
position: 19137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18244-19137:-1:exon

HQ393_RS16960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16960
old locus tag: HQ393_16960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MARQGITFEQVAAVADALAGEGQQPTIRAVRERLGDTGSPNTIHKHLAAWREARPVAAAAAPELPQALTAAIAAEIERAASRARGEIEGRLVQAQAEAAELAAAGEVLEDERDELAEQVAVLTTERDTLAGKAAQQAADLAEAQQRIEREQQAAESARLEVATARHKIEAQAERVSEQAAELVRLRAALAEAQQGRTAAEQQAAVLAAKLEACADRVSRAEARAEQIEQQAAKAAQAHDTARAAAAQETRQAQAERDEARKVAAEAREQAARLAGQLEALRKADPVPAVFPPASTGV
SIO_010081: HQ393_RS16960
subclass of: SO_0000673
so part of: HQ393_RS16960
location: complement(18244..19137)
location: region:18244-19137:-1
so has part: feature:18244-19137:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18244-19137:-1:exon

HQ393_RS16965
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16965
old locus tag: HQ393_16965
so part of: sequence
location: complement(19653..19952)
location: region:19653-19952:-1
so has part: feature:19653-19952:-1:exon
subclass of: SO_0000010

position:19653:-1
position: 19653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19952:-1
position: 19952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19653-19952:-1:exon

HQ393_RS16965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16965
old locus tag: HQ393_16965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012637485.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRARRSFPPALLDSLRAMTVQETLDRLGLYWKRDPGFVPVKDKATVRLNVSIGGGGVELLATGPKWYDTRKEQGGGAIDLAMHLFRLSFVDAVKRLSP
SIO_010081: HQ393_RS16965
subclass of: SO_0000673
so part of: HQ393_RS16965
location: complement(19653..19952)
location: region:19653-19952:-1
so has part: feature:19653-19952:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19653-19952:-1:exon

HQ393_RS16970
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16970
old locus tag: HQ393_16970
so part of: sequence
location: complement(20184..21590)
location: region:20184-21590:-1
so has part: feature:20184-21590:-1:exon
subclass of: SO_0000010

position:20184:-1
position: 20184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21590:-1
position: 21590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20184-21590:-1:exon

HQ393_RS16970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16970
old locus tag: HQ393_16970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017173678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MGQAQLRLFSPADEAGCYHDTARQGFFSLLMATGEGSGKKQDSYRLSQMPVVLSMLDHSRDTWLSQAEFIKPNRRVVNLARIGLLFADLDTYREPWAQGRSPEQLAAAVMFRCYDEGVPPPSILVFSGRGVQAKWLLDGTLPRQALPRWNACQRYLIDRLAGLGADPAAKDASRVLRLVNTVNSKSGEVCRVIHVELGPDGEPIRYNFEYLAEALLPVARWDIEADRKARADRRQFKLLPGGQTGNLRTLNGRQLAWDRLEDLRTLAALRGGVAEGERMQHLFWRLNFLLLSGATHTGQMYHEAAALARELDPRWNYRSAELMTLYAKAKAHEAGEKVEFGGKQFAPLYTPKNDTLISLFHITDDEQRKLRTLISRDMAAERHSEREKARRRAAGAVDRASYLEAASAKQAQALALKAQGLSVRAIAAQMGISKTAAGRYIAEPGECPKSMRITNGEAYARRVAPAFE
SIO_010081: HQ393_RS16970
subclass of: SO_0000673
so part of: HQ393_RS16970
location: complement(20184..21590)
location: region:20184-21590:-1
so has part: feature:20184-21590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20184-21590:-1:exon

HQ393_RS16975
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS16975
old locus tag: HQ393_16975
so part of: sequence
location: complement(21756..22142)
location: region:21756-22142:-1
so has part: feature:21756-22142:-1:exon
subclass of: SO_0000010

position:21756:-1
position: 21756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22142:-1
position: 22142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21756-22142:-1:exon

HQ393_RS16975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS16975
old locus tag: HQ393_16975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParC family partition-associated protein
translation: MDYSPYIFDLAKFNNVDEIRRVGYKVMVEMEPLSLEVLPPSHFKAFAKNAPHEIKGAVIENTERGLVIVLHVGNERRILGQYRGGIRFFRSFDGAAAVLRQHGVLHWTANAKGWIPRTLEAKERSSDG
SIO_010081: HQ393_RS16975
subclass of: SO_0000673
so part of: HQ393_RS16975
location: complement(21756..22142)
location: region:21756-22142:-1
so has part: feature:21756-22142:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21756-22142:-1:exon

HQ393_RS16980
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16980
old locus tag: HQ393_16980
so part of: sequence
location: complement(22176..22397)
location: region:22176-22397:-1
so has part: feature:22176-22397:-1:exon
subclass of: SO_0000010

position:22176:-1
position: 22176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22397:-1
position: 22397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22176-22397:-1:exon

HQ393_RS16980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16980
old locus tag: HQ393_16980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MSSGKLGMKAGRPSAAKAGPTLSDLADKAATVRVNFDLDRAEHTKLKIYAAKTGRSITDILRELVRSLDEKSD
SIO_010081: HQ393_RS16980
subclass of: SO_0000673
so part of: HQ393_RS16980
location: complement(22176..22397)
location: region:22176-22397:-1
so has part: feature:22176-22397:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22176-22397:-1:exon

HQ393_RS16985
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS16985
old locus tag: HQ393_16985
so part of: sequence
location: complement(22419..23057)
location: region:22419-23057:-1
so has part: feature:22419-23057:-1:exon
subclass of: SO_0000010

position:22419:-1
position: 22419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23057:-1
position: 23057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22419-23057:-1:exon

HQ393_RS16985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS16985
old locus tag: HQ393_16985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159116.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MQVIAVLNQKGGAGKTTIATHLARALQLDGADVLLVDSDPQGSARDWAAVREDQPVPVVGIDRPTIERDLKSVARKDFVVIDGAPQAHDLAVSAMKAADCVLIPVQPSPYDIWATSDLVDLVKQRIELTDGKLKAAFVVSRAIKGTKIGAEVSEALAGYGLPILQTRITQRVIYPSSAASGTTAIDQEPTSEAAEEIRALAEEVRRFLNCTI
SIO_010081: HQ393_RS16985
subclass of: SO_0000673
so part of: HQ393_RS16985
location: complement(22419..23057)
location: region:22419-23057:-1
so has part: feature:22419-23057:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22419-23057:-1:exon

HQ393_RS16990
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16990
old locus tag: HQ393_16990
so part of: sequence
location: complement(23212..23352)
location: region:23212-23352:-1
so has part: feature:23212-23352:-1:exon
subclass of: SO_0000010

position:23212:-1
position: 23212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23352:-1
position: 23352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23212-23352:-1:exon

HQ393_RS16990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16990
old locus tag: HQ393_16990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQELERRATSIVQALDDATLEAIAAGTLDMLAMCRQVADEIHQAA
SIO_010081: HQ393_RS16990
subclass of: SO_0000673
so part of: HQ393_RS16990
location: complement(23212..23352)
location: region:23212-23352:-1
so has part: feature:23212-23352:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23212-23352:-1:exon

HQ393_RS16995
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS16995
old locus tag: HQ393_16995
so part of: sequence
location: 23397..23645
location: region:23397-23645:1
so has part: feature:23397-23645:1:exon
subclass of: SO_0000010

position:23397:1
position: 23397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23645:1
position: 23645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23397-23645:1:exon

HQ393_RS16995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS16995
old locus tag: HQ393_16995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS16995
subclass of: SO_0000673
so part of: HQ393_RS16995
location: 23397..23645
location: region:23397-23645:1
so has part: feature:23397-23645:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23397-23645:1:exon

HQ393_RS17000
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17000
old locus tag: HQ393_17000
so part of: sequence
location: 23774..24340
location: region:23774-24340:1
so has part: feature:23774-24340:1:exon
subclass of: SO_0000010

position:23774:1
position: 23774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24340:1
position: 24340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23774-24340:1:exon

HQ393_RS17000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17000
old locus tag: HQ393_17000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS17000
subclass of: SO_0000673
so part of: HQ393_RS17000
location: 23774..24340
location: region:23774-24340:1
so has part: feature:23774-24340:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23774-24340:1:exon

HQ393_RS17005
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17005
old locus tag: HQ393_17005
so part of: sequence
location: 24574..24816
location: region:24574-24816:1
so has part: feature:24574-24816:1:exon
subclass of: SO_0000010

position:24574:1
position: 24574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24816:1
position: 24816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24574-24816:1:exon

HQ393_RS17005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17005
old locus tag: HQ393_17005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
SIO_010081: HQ393_RS17005
subclass of: SO_0000673
so part of: HQ393_RS17005
location: 24574..24816
location: region:24574-24816:1
so has part: feature:24574-24816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24574-24816:1:exon

HQ393_RS17010
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS17010
old locus tag: HQ393_17010
so part of: sequence
location: complement(24848..25498)
location: region:24848-25498:-1
so has part: feature:24848-25498:-1:exon
subclass of: SO_0000010

position:24848:-1
position: 24848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25498:-1
position: 25498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24848-25498:-1:exon

HQ393_RS17010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS17010
old locus tag: HQ393_17010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(A)
translation: MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
SIO_010081: HQ393_RS17010
subclass of: SO_0000673
so part of: HQ393_RS17010
location: complement(24848..25498)
location: region:24848-25498:-1
so has part: feature:24848-25498:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24848-25498:-1:exon

HQ393_RS17015
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS17015
old locus tag: HQ393_17015
so part of: sequence
location: 25604..26803
location: region:25604-26803:1
so has part: feature:25604-26803:1:exon
subclass of: SO_0000010

position:25604:1
position: 25604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26803:1
position: 26803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25604-26803:1:exon

HQ393_RS17015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS17015
old locus tag: HQ393_17015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(A)
translation: MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
SIO_010081: HQ393_RS17015
subclass of: SO_0000673
so part of: HQ393_RS17015
location: 25604..26803
location: region:25604-26803:1
so has part: feature:25604-26803:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25604-26803:1:exon

HQ393_RS17020
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17020
old locus tag: HQ393_17020
so part of: sequence
location: complement(26734..27201)
location: region:26734-27201:-1
so has part: feature:26734-27201:-1:exon
subclass of: SO_0000010

position:26734:-1
position: 26734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27201:-1
position: 27201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26734-27201:-1:exon

HQ393_RS17020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17020
old locus tag: HQ393_17020
inference: COORDINATES: protein motif:HMM:NF024917.2
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MIKAQIRRLGAADVQDFREIRLSALKKAPEMFGSVYEHEEKKPMEAFAERLRDAVAFGAYIDGEIIGLSVFKQEDGPKDAHKAHLSGVFVEPEQRGRGVAGMLLRAVIDYGREHVEQIMLTVAEGNEAAINLYQRSARCPAPLQSPRRSAGRQSK
SIO_010081: HQ393_RS17020
subclass of: SO_0000673
so part of: HQ393_RS17020
location: complement(26734..27201)
location: region:26734-27201:-1
so has part: feature:26734-27201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26734-27201:-1:exon

HQ393_RS17810
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17810
pseudo: true
so part of: sequence
location: complement(<27275..>27346)
location: region:27275-27346:-1
so has part: feature:27275-27346:-1:exon
subclass of: SO_0000010

position:27275:-1
position: 27275
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:27346:-1
position: 27346
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27275-27346:-1:exon

HQ393_RS17810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17810
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221012.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
SIO_010081: HQ393_RS17810
subclass of: SO_0000673
so part of: HQ393_RS17810
location: complement(<27275..>27346)
location: region:27275-27346:-1
so has part: feature:27275-27346:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27275-27346:-1:exon

HQ393_RS17025
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS17025
old locus tag: HQ393_17025
pseudo: true
so part of: sequence
location: complement(27366..>27995)
location: region:27366-27995:-1
so has part: feature:27366-27995:-1:exon
subclass of: SO_0000010

position:27366:-1
position: 27366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27995:-1
position: 27995
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27366-27995:-1:exon

HQ393_RS17025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS17025
old locus tag: HQ393_17025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001082279.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
SIO_010081: HQ393_RS17025
subclass of: SO_0000673
so part of: HQ393_RS17025
location: complement(27366..>27995)
location: region:27366-27995:-1
so has part: feature:27366-27995:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27366-27995:-1:exon

HQ393_RS17030
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17030
old locus tag: HQ393_17030
so part of: sequence
location: complement(28026..28592)
location: region:28026-28592:-1
so has part: feature:28026-28592:-1:exon
subclass of: SO_0000010

position:28026:-1
position: 28026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28592:-1
position: 28592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28026-28592:-1:exon

HQ393_RS17030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17030
old locus tag: HQ393_17030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS17030
subclass of: SO_0000673
so part of: HQ393_RS17030
location: complement(28026..28592)
location: region:28026-28592:-1
so has part: feature:28026-28592:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28026-28592:-1:exon

HQ393_RS17035
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17035
old locus tag: HQ393_17035
so part of: sequence
location: complement(28721..28969)
location: region:28721-28969:-1
so has part: feature:28721-28969:-1:exon
subclass of: SO_0000010

position:28721:-1
position: 28721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28969:-1
position: 28969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28721-28969:-1:exon

HQ393_RS17035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17035
old locus tag: HQ393_17035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS17035
subclass of: SO_0000673
so part of: HQ393_RS17035
location: complement(28721..28969)
location: region:28721-28969:-1
so has part: feature:28721-28969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28721-28969:-1:exon

HQ393_RS17815
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17815
old locus tag: HQ393_17040
so part of: sequence
location: complement(29055..29978)
location: region:29055-29978:-1
so has part: feature:29055-29978:-1:exon
subclass of: SO_0000010

position:29055:-1
position: 29055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29978:-1
position: 29978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29055-29978:-1:exon

HQ393_RS17815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17815
old locus tag: HQ393_17040
inference: COORDINATES: protein motif:HMM:NF028103.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family DNA primase
translation: MTALDVPRFEVGIREAKTGQMMNREWSRAELEQSAAWLKRMNAKGNDVYIRPAGEHGLVLVDDLKPQALERMKAEGFAPAATIETSPGNYQAWVKLSDKPLSADVRRIAAQGLAKQYGGDSRHYGRLAGFTNQKPQHARDGRQPYVLAHDCPGKAARSAPSYLERIEQHLDRAAAQQEREKRLEALETAKPGGYGSQYDPVKEYQRQAQRLMQRYGKEADFSRLDWMIATDMAKSGRFTAQDIEKGILECSPHVESRKAGHVEDYARRTAANAWAAPEVQAHRQEQEQERERQAQRSRDRDGPGMIR
SIO_010081: HQ393_RS17815
subclass of: SO_0000673
so part of: HQ393_RS17815
location: complement(29055..29978)
location: region:29055-29978:-1
so has part: feature:29055-29978:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29055-29978:-1:exon

HQ393_RS17820
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17820
old locus tag: HQ393_17045
so part of: sequence
location: complement(29975..30475)
location: region:29975-30475:-1
so has part: feature:29975-30475:-1:exon
subclass of: SO_0000010

position:29975:-1
position: 29975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30475:-1
position: 30475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29975-30475:-1:exon

HQ393_RS17820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17820
old locus tag: HQ393_17045
inference: COORDINATES: protein motif:HMM:NF036929.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IncQ-type mobilization protein MobB
translation: MSKTETLRQSAAASNETRLERLASQIETVRQAKHQSAEDLAATLEPLAQAMAALADETRQTLAEIDRKSREQGETFTRQLSESVKGYKDAVAAASQAAESLNQAGQRMEWRHYGLAVVTGLVTAALVSGFWLWLAPPKVQNMLDAQAVAEYLKPAVIEALKPSRGR
SIO_010081: HQ393_RS17820
subclass of: SO_0000673
so part of: HQ393_RS17820
location: complement(29975..30475)
location: region:29975-30475:-1
so has part: feature:29975-30475:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29975-30475:-1:exon

HQ393_RS17825
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17825
old locus tag: HQ393_17050
pseudo: true
so part of: sequence
location: complement(<30498..31205)
location: region:30498-31205:-1
so has part: feature:30498-31205:-1:exon
subclass of: SO_0000010

position:30498:-1
position: 30498
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:31205:-1
position: 31205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30498-31205:-1:exon

HQ393_RS17825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17825
old locus tag: HQ393_17050
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: HQ393_RS17825
subclass of: SO_0000673
so part of: HQ393_RS17825
location: complement(<30498..31205)
location: region:30498-31205:-1
so has part: feature:30498-31205:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30498-31205:-1:exon

HQ393_RS17055
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17055
old locus tag: HQ393_17055
so part of: sequence
location: complement(31214..31600)
location: region:31214-31600:-1
so has part: feature:31214-31600:-1:exon
subclass of: SO_0000010

position:31214:-1
position: 31214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31600:-1
position: 31600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31214-31600:-1:exon

HQ393_RS17055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17055
old locus tag: HQ393_17055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013123754.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MTAETTPPRKGRGGRPKGDPSAVRASTIGVRVSAEEYAALRAKADQMGMTPAQWLREAALSRRLPSPPVPPINREQYAELARLAANLNQLTRLANEGRPVTVADALLQRLAGEVGRLRLALIGAGGGE
SIO_010081: HQ393_RS17055
subclass of: SO_0000673
so part of: HQ393_RS17055
location: complement(31214..31600)
location: region:31214-31600:-1
so has part: feature:31214-31600:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31214-31600:-1:exon

HQ393_RS17060
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17060
old locus tag: HQ393_17060
so part of: sequence
location: complement(31746..32639)
location: region:31746-32639:-1
so has part: feature:31746-32639:-1:exon
subclass of: SO_0000010

position:31746:-1
position: 31746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32639:-1
position: 32639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31746-32639:-1:exon

HQ393_RS17060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17060
old locus tag: HQ393_17060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MARQGITFEQVAAVADALAGEGQQPTIRAVRERLGDTGSPNTIHKHLAAWREARPVAAAAAPELPQALTAAIAAEIERAASRARGEIEGRLVQAQAEAAELAAAGEVLEDERDELAEQVAVLTTERDTLAGKAAQQAADLAEAQQRIEREQQAAESARLEVATARHKIEAQAERVSEQAAELVRLRAALAEAQQGRTAAEQQAAVLAAKLEACADRVSRAEARAEQIEQQAAKAAQAHDTARAAAAQETRQAQAERDEARKVAAEAREQAARLAGQLEALRKADPVPAVFPPASTGV
SIO_010081: HQ393_RS17060
subclass of: SO_0000673
so part of: HQ393_RS17060
location: complement(31746..32639)
location: region:31746-32639:-1
so has part: feature:31746-32639:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31746-32639:-1:exon

HQ393_RS17065
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17065
old locus tag: HQ393_17065
so part of: sequence
location: complement(33155..33454)
location: region:33155-33454:-1
so has part: feature:33155-33454:-1:exon
subclass of: SO_0000010

position:33155:-1
position: 33155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33454:-1
position: 33454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33155-33454:-1:exon

HQ393_RS17065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17065
old locus tag: HQ393_17065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012637485.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRARRSFPPALLDSLRAMTVQETLDRLGLYWKRDPGFVPVKDKATVRLNVSIGGGGVELLATGPKWYDTRKEQGGGAIDLAMHLFRLSFVDAVKRLSP
SIO_010081: HQ393_RS17065
subclass of: SO_0000673
so part of: HQ393_RS17065
location: complement(33155..33454)
location: region:33155-33454:-1
so has part: feature:33155-33454:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33155-33454:-1:exon

HQ393_RS17070
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17070
old locus tag: HQ393_17070
so part of: sequence
location: complement(33671..35077)
location: region:33671-35077:-1
so has part: feature:33671-35077:-1:exon
subclass of: SO_0000010

position:33671:-1
position: 33671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35077:-1
position: 35077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33671-35077:-1:exon

HQ393_RS17070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17070
old locus tag: HQ393_17070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017173678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MGQAQLRLFSPADEAGCYHDTARQGFFSLLMATGEGSGKKQDSYRLSQMPVVLSMLDHSRDTWLSQAEFIKPNRRVVNLARIGLLFADLDTYREPWAQGRSPEQLAAAVMFRCYDEGVPPPSILVFSGRGVQAKWLLDGTLPRQALPRWNACQRYLIDRLAGLGADPAAKDASRVLRLVNTVNSKSGEVCRVIHVELGPDGEPIRYNFEYLAEALLPVARWDIEADRKARADRRQFKLLPGGQTGNLRTLNGRQLAWDRLEDLRTLAALRGGVAEGERMQHLFWRLNFLLLSGATHTGQMYHEAAALARELDPRWNYRSAELMTLYAKAKAHEAGEKVEFGGKQFAPLYTPKNDTLISLFHITDDEQRKLRTLISRDMAAERHSEREKARRRAAGAVDRASYLEAASAKQAQALALKAQGLSVRAIAAQMGISKTAAGRYIAEPGECPKSMRITNGEAYARRVAPAFE
SIO_010081: HQ393_RS17070
subclass of: SO_0000673
so part of: HQ393_RS17070
location: complement(33671..35077)
location: region:33671-35077:-1
so has part: feature:33671-35077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33671-35077:-1:exon

HQ393_RS17075
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS17075
old locus tag: HQ393_17075
so part of: sequence
location: complement(35243..35629)
location: region:35243-35629:-1
so has part: feature:35243-35629:-1:exon
subclass of: SO_0000010

position:35243:-1
position: 35243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35629:-1
position: 35629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35243-35629:-1:exon

HQ393_RS17075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parC
locus tag: HQ393_RS17075
old locus tag: HQ393_17075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParC family partition-associated protein
translation: MDYSPYIFDLAKFNNVDEIRRVGYKVMVEMEPLSLEVLPPSHFKAFAKNAPHEIKGAVIENTERGLVIVLHVGNERRILGQYRGGIRFFRSFDGAAAVLRQHGVLHWTANAKGWIPRTLEAKERSSDG
SIO_010081: HQ393_RS17075
subclass of: SO_0000673
so part of: HQ393_RS17075
location: complement(35243..35629)
location: region:35243-35629:-1
so has part: feature:35243-35629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35243-35629:-1:exon

HQ393_RS17080
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17080
old locus tag: HQ393_17080
so part of: sequence
location: complement(35663..35884)
location: region:35663-35884:-1
so has part: feature:35663-35884:-1:exon
subclass of: SO_0000010

position:35663:-1
position: 35663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35884:-1
position: 35884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35663-35884:-1:exon

HQ393_RS17080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17080
old locus tag: HQ393_17080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MSSGKLGMKAGRPSAAKAGPTLSDLADKAATVRVNFDLDRAEHTKLKIYAAKTGRSITDILRELVRSLDEKSD
SIO_010081: HQ393_RS17080
subclass of: SO_0000673
so part of: HQ393_RS17080
location: complement(35663..35884)
location: region:35663-35884:-1
so has part: feature:35663-35884:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35663-35884:-1:exon

HQ393_RS17085
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS17085
old locus tag: HQ393_17085
so part of: sequence
location: complement(35906..36544)
location: region:35906-36544:-1
so has part: feature:35906-36544:-1:exon
subclass of: SO_0000010

position:35906:-1
position: 35906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36544:-1
position: 36544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35906-36544:-1:exon

HQ393_RS17085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: parA
locus tag: HQ393_RS17085
old locus tag: HQ393_17085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159116.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MQVIAVLNQKGGAGKTTIATHLARALQLDGADVLLVDSDPQGSARDWAAVREDQPVPVVGIDRPTIERDLKSVARKDFVVIDGAPQAHDLAVSAMKAADCVLIPVQPSPYDIWATSDLVDLVKQRIELTDGKLKAAFVVSRAIKGTKIGAEVSEALAGYGLPILQTRITQRVIYPSSAASGTTAIDQEPTSEAAEEIRALAEEVRRFLNCTI
SIO_010081: HQ393_RS17085
subclass of: SO_0000673
so part of: HQ393_RS17085
location: complement(35906..36544)
location: region:35906-36544:-1
so has part: feature:35906-36544:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35906-36544:-1:exon

HQ393_RS17090
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17090
old locus tag: HQ393_17090
so part of: sequence
location: complement(36699..36839)
location: region:36699-36839:-1
so has part: feature:36699-36839:-1:exon
subclass of: SO_0000010

position:36699:-1
position: 36699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36839:-1
position: 36839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36699-36839:-1:exon

HQ393_RS17090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17090
old locus tag: HQ393_17090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQELERRATSIVQALDDATLEAIAAGTLDMLAMCRQVADEIHQAA
SIO_010081: HQ393_RS17090
subclass of: SO_0000673
so part of: HQ393_RS17090
location: complement(36699..36839)
location: region:36699-36839:-1
so has part: feature:36699-36839:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36699-36839:-1:exon

HQ393_RS17095
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17095
old locus tag: HQ393_17095
so part of: sequence
location: 36884..37132
location: region:36884-37132:1
so has part: feature:36884-37132:1:exon
subclass of: SO_0000010

position:36884:1
position: 36884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37132:1
position: 37132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36884-37132:1:exon

HQ393_RS17095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17095
old locus tag: HQ393_17095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQSSIERTVSGVRCTNDDLKPVLVALATDQPLDVRYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLRLARLGSHSELFG
SIO_010081: HQ393_RS17095
subclass of: SO_0000673
so part of: HQ393_RS17095
location: 36884..37132
location: region:36884-37132:1
so has part: feature:36884-37132:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36884-37132:1:exon

HQ393_RS17100
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17100
old locus tag: HQ393_17100
so part of: sequence
location: 37261..37827
location: region:37261-37827:1
so has part: feature:37261-37827:1:exon
subclass of: SO_0000010

position:37261:1
position: 37261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37827:1
position: 37827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37261-37827:1:exon

HQ393_RS17100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17100
old locus tag: HQ393_17100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRDGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTPGGRLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAREHIANGLNVREAATRLKVSKTALYTALQSTSAADS
SIO_010081: HQ393_RS17100
subclass of: SO_0000673
so part of: HQ393_RS17100
location: 37261..37827
location: region:37261-37827:1
so has part: feature:37261-37827:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37261-37827:1:exon

HQ393_RS17105
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17105
old locus tag: HQ393_17105
so part of: sequence
location: 38061..38303
location: region:38061-38303:1
so has part: feature:38061-38303:1:exon
subclass of: SO_0000010

position:38061:1
position: 38061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38303:1
position: 38303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38061-38303:1:exon

HQ393_RS17105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17105
old locus tag: HQ393_17105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
SIO_010081: HQ393_RS17105
subclass of: SO_0000673
so part of: HQ393_RS17105
location: 38061..38303
location: region:38061-38303:1
so has part: feature:38061-38303:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38061-38303:1:exon

HQ393_RS17110
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS17110
old locus tag: HQ393_17110
so part of: sequence
location: complement(38335..38985)
location: region:38335-38985:-1
so has part: feature:38335-38985:-1:exon
subclass of: SO_0000010

position:38335:-1
position: 38335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38985:-1
position: 38985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38335-38985:-1:exon

HQ393_RS17110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tetR(A)
locus tag: HQ393_RS17110
old locus tag: HQ393_17110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(A)
translation: MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
SIO_010081: HQ393_RS17110
subclass of: SO_0000673
so part of: HQ393_RS17110
location: complement(38335..38985)
location: region:38335-38985:-1
so has part: feature:38335-38985:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38335-38985:-1:exon

HQ393_RS17115
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS17115
old locus tag: HQ393_17115
pseudo: true
so part of: sequence
location: 39090..40282
location: region:39090-40282:1
so has part: feature:39090-40282:1:exon
subclass of: SO_0000010

position:39090:1
position: 39090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40282:1
position: 40282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39090-40282:1:exon

HQ393_RS17115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: tet(A)
locus tag: HQ393_RS17115
old locus tag: HQ393_17115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(A)
SIO_010081: HQ393_RS17115
subclass of: SO_0000673
so part of: HQ393_RS17115
location: 39090..40282
location: region:39090-40282:1
so has part: feature:39090-40282:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39090-40282:1:exon

HQ393_RS17830
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17830
pseudo: true
so part of: sequence
location: complement(<40336..40590)
location: region:40336-40590:-1
so has part: feature:40336-40590:-1:exon
subclass of: SO_0000010

position:40336:-1
position: 40336
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:40590:-1
position: 40590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40336-40590:-1:exon

HQ393_RS17830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17830
inference: COORDINATES: protein motif:HMM:NF024917.2
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
SIO_010081: HQ393_RS17830
subclass of: SO_0000673
so part of: HQ393_RS17830
location: complement(<40336..40590)
location: region:40336-40590:-1
so has part: feature:40336-40590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40336-40590:-1:exon

HQ393_RS17125
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17125
old locus tag: HQ393_17125
pseudo: true
so part of: sequence
location: complement(<40754..>40825)
location: region:40754-40825:-1
so has part: feature:40754-40825:-1:exon
subclass of: SO_0000010

position:40754:-1
position: 40754
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:40825:-1
position: 40825
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40754-40825:-1:exon

HQ393_RS17125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17125
old locus tag: HQ393_17125
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221012.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
SIO_010081: HQ393_RS17125
subclass of: SO_0000673
so part of: HQ393_RS17125
location: complement(<40754..>40825)
location: region:40754-40825:-1
so has part: feature:40754-40825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40754-40825:-1:exon

HQ393_RS17130
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS17130
old locus tag: HQ393_17130
pseudo: true
so part of: sequence
location: complement(40845..>41473)
location: region:40845-41473:-1
so has part: feature:40845-41473:-1:exon
subclass of: SO_0000010

position:40845:-1
position: 40845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41473:-1
position: 41473
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40845-41473:-1:exon

HQ393_RS17130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
gene: trfA
locus tag: HQ393_RS17130
old locus tag: HQ393_17130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001082279.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
SIO_010081: HQ393_RS17130
subclass of: SO_0000673
so part of: HQ393_RS17130
location: complement(40845..>41473)
location: region:40845-41473:-1
so has part: feature:40845-41473:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40845-41473:-1:exon

HQ393_RS17135
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17135
old locus tag: HQ393_17135
pseudo: true
so part of: sequence
location: complement(41504..42071)
location: region:41504-42071:-1
so has part: feature:41504-42071:-1:exon
subclass of: SO_0000010

position:41504:-1
position: 41504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42071:-1
position: 42071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41504-42071:-1:exon

HQ393_RS17135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17135
old locus tag: HQ393_17135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: HQ393_RS17135
subclass of: SO_0000673
so part of: HQ393_RS17135
location: complement(41504..42071)
location: region:41504-42071:-1
so has part: feature:41504-42071:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41504-42071:-1:exon

HQ393_RS17140
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17140
old locus tag: HQ393_17140
pseudo: true
so part of: sequence
location: complement(42200..42447)
location: region:42200-42447:-1
so has part: feature:42200-42447:-1:exon
subclass of: SO_0000010

position:42200:-1
position: 42200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42447:-1
position: 42447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42200-42447:-1:exon

HQ393_RS17140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17140
old locus tag: HQ393_17140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012585400.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
SIO_010081: HQ393_RS17140
subclass of: SO_0000673
so part of: HQ393_RS17140
location: complement(42200..42447)
location: region:42200-42447:-1
so has part: feature:42200-42447:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42200-42447:-1:exon

HQ393_RS17145
type: Gene
subclass of: SO_0000704
RO_0002162: 2739434
locus tag: HQ393_RS17145
old locus tag: HQ393_17145
pseudo: true
so part of: sequence
location: complement(42540..>42950)
location: region:42540-42950:-1
so has part: feature:42540-42950:-1:exon
subclass of: SO_0000010

position:42540:-1
position: 42540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42950:-1
position: 42950
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42540-42950:-1:exon

HQ393_RS17145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739434
locus tag: HQ393_RS17145
old locus tag: HQ393_17145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008168803.1
note: incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA topoisomerase
SIO_010081: HQ393_RS17145
subclass of: SO_0000673
so part of: HQ393_RS17145
location: complement(42540..>42950)
location: region:42540-42950:-1
so has part: feature:42540-42950:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42540-42950:-1:exon