Deefgea piscis strain D17 plasmid unnamed2, complete sequence.
type: Entry
definition: Deefgea piscis strain D17 plasmid unnamed2, complete sequence.
sequence version: NZ_CP054145.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP054145.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15014496
keyword: RefSeq
source: Deefgea piscis
organism: Deefgea piscis
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Deefgea.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP054145.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.15x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 08:39:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,224\nCDSs (total) :: 3,115\nGenes (coding) :: 3,067\nCDSs (with protein) :: 3,067\nGenes (RNA) :: 109\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 10 of 48\nPseudo Genes (incomplete) :: 42 of 48\nPseudo Genes (internal stop) :: 5 of 48\nPseudo Genes (multiple problems) :: 8 of 48\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15571
topology: circular
so has quality: SO_0000988
location: 1..15571
location: region:1-15571:1
RO_0002162: 2739061

NZ_CP054145
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15014496
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Deefgea sp. D17
author: Bae, J.-W.
author: Han, J.E.
journal: Unpublished

2
title: Direct Submission
author: Bae, J.-W.
author: Han, J.E.
journal: Submitted (28-MAY-2020) Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Kyungheedae-ro 26, Seoul 130-701, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15571:1
position: 15571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15571:1:source
so part of: sequence
organism: Deefgea piscis
mol type: genomic DNA
strain: D17
host: Odontobutis platycephala
type material: type strain of Deefgea piscis
plasmid: unnamed2
country: South Korea
collection date: 2019-04

2739061
type: Taxonomy
SIO_000068: taxonomy

HQN60_RS15895
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15895
old locus tag: HQN60_15895
so part of: sequence
location: join(15194..15571,1..582)
location: region:1-15571:1
so has part: feature:15194-15571:1:exon
so has part: feature:1-582:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:15194-15571:1:exon

position:15194:1
position: 15194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-582:1:exon

position:582:1
position: 582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HQN60_RS15895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15895
old locus tag: HQN60_15895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHKYAAFKKGILPLANHTFGDGANKMEITSKSKYKDNITETNSQIKRESSENRPNITTLNNIKNKDSSIVSISGNALMISRLFDGKSNTPIASGKTGTALINSGVSNVNYLNSDDRELLAEMYQFANNNGVDLQNVDAIAQTLGSYRRFDDGRNLYNFNNGHNMDTNGNVLSVNFSEKDSKTASRIINGEAINTTRIDHGFLKFILDPGYGALMNTTDLEFLEQMTTKFSEKGTNITKIDEKFSKFSPTPREKITYTRTGEKIDILNNDDINNIVNKSTLEKISENSKKTLIRELMHGKTNEKTQQINIFDLLKNFTKK
SIO_010081: HQN60_RS15895
subclass of: SO_0000673
so part of: HQN60_RS15895
location: join(15194..15571,1..582)
location: region:1-15571:1
so has part: feature:15194-15571:1:exon
so has part: feature:1-582:1:exon

WP_173534809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15194-15571:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-582:1:exon

HQN60_RS15900
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15900
old locus tag: HQN60_15900
so part of: sequence
location: 659..1186
location: region:659-1186:1
so has part: feature:659-1186:1:exon
subclass of: SO_0000010

position:659:1
position: 659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186:1
position: 1186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:659-1186:1:exon

HQN60_RS15900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15900
old locus tag: HQN60_15900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISSVTNTSINTTSNKSTNQINLSAICDSCDPRNANYGKYTEQQISTAFQQRNEREYNAFLKYAGDATPTGIVKFAAAYVKFYDSLSPEEQKNPTYAGTRESATALLNGAKAMEGKSESSSTSNTKYASLFDAFDIFVTRQKSMHTINTKNNENSSSTKITLSDEAKKLLNNSIK
SIO_010081: HQN60_RS15900
subclass of: SO_0000673
so part of: HQN60_RS15900
location: 659..1186
location: region:659-1186:1
so has part: feature:659-1186:1:exon

WP_173534793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:659-1186:1:exon

HQN60_RS15905
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15905
old locus tag: HQN60_15905
so part of: sequence
location: complement(1251..2498)
location: region:1251-2498:-1
so has part: feature:1251-2498:-1:exon
subclass of: SO_0000010

position:1251:-1
position: 1251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2498:-1
position: 2498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1251-2498:-1:exon

HQN60_RS15905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15905
old locus tag: HQN60_15905
inference: COORDINATES: protein motif:HMM:NF027890.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HlyD family efflux transporter periplasmic adaptor subunit
translation: MTNLSKKKKVGLLVGVTIFILVIGAGLTYGRTHEVAQPNMLRVEPQEVIQRIALVGRIEPSVLVTMSAPFDGSIVQIHAEEGLKVERDQLLASFDPSNLEIQLREALAVKLKAERSVQEFDKWAQSSEVMRAKRTLTGIQFNLSDTEHKLAETRLLFEQGIVPKMELDTLVQQQKSLKLDAQAADVELQAVIAKAHGDARRIAEMELANAQAKYETLQAQLARKEVRAPFAGVIVRVPSNSAENTSTETIQVGGNVRRDQPLFGLANLEQLKVTAKVDEVDVNRLHEGMNVDITGDGFEGVPLTGQITRIASQSSTSSEGSGARYDISVSIPKLLPEQRKQMRLGMSANLSVIAYKNPSAVVVPASAIHAKDGRYYVRIVGKSQHQVTMKPVTLGRSLENGVEVNGLPTGIEIVY
SIO_010081: HQN60_RS15905
subclass of: SO_0000673
so part of: HQN60_RS15905
location: complement(1251..2498)
location: region:1251-2498:-1
so has part: feature:1251-2498:-1:exon

WP_173534794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1251-2498:-1:exon

HQN60_RS15910
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15910
old locus tag: HQN60_15910
so part of: sequence
location: complement(2491..3963)
location: region:2491-3963:-1
so has part: feature:2491-3963:-1:exon
subclass of: SO_0000010

position:2491:-1
position: 2491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3963:-1
position: 3963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2491-3963:-1:exon

HQN60_RS15910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15910
old locus tag: HQN60_15910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009114537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TolC family protein
translation: MSNFRFSMLELFLGFSAISSVYAFDQTQISRPTMPKEPVAAPILNSIELSLSDAIYLGLRNNRSISSAYLQRVAQKFDLRVAEDRFTPKLLLSTQFLRNQIKDSQSDKTADLNTGLSMITPLGTKINLAWRGQSSHQLDNRLSAVSFSVIQPLLRDAGWDVNMAPVQLAQLNEKAYRLSLKSTVSQTVTQIILAYRDFVRAQKQLDITQDALERSKQLLVVNKALISAGRMAEFEIVQTEADAATQELAVEEAKNQLDASRVELLRLLAIDLATAIRANDDLNAEPVVIDNAQAQRVALENQPEYLAQLIAGQQARINLKLAKNQRLWDVSLVGGVNHTTEQTGIESNVTNVRSDNFIGLKLEIPLGDLSRQQGEIQAQATVDTQALREAEAKQQLEQTVHNSLRDISTRWRQFEISKRAYELSLKKLDIERQKLKVGRSSNFQVLSFESDLRNAESVRLNALISYLNAQTQLDLKLGTTLENWQIAIND
SIO_010081: HQN60_RS15910
subclass of: SO_0000673
so part of: HQN60_RS15910
location: complement(2491..3963)
location: region:2491-3963:-1
so has part: feature:2491-3963:-1:exon

WP_173534795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2491-3963:-1:exon

HQN60_RS15915
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15915
old locus tag: HQN60_15915
so part of: sequence
location: complement(3956..5164)
location: region:3956-5164:-1
so has part: feature:3956-5164:-1:exon
subclass of: SO_0000010

position:3956:-1
position: 3956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5164:-1
position: 5164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3956-5164:-1:exon

HQN60_RS15915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15915
old locus tag: HQN60_15915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015834026.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MLELVKNGKPSLAQQFVESLSSLLIFRHRSLLALLGITIGCASIIALLNIGQNAADESLRTFQSMGSNTLIVNFPPSAKAKTPLPLKINVTDFQQAMPNVANIAGLTLFGAKVGYNGQSVDSSIVGTTVGLADIAGLRLAQGRFISDFDHRETFVVLGARVANALSHGVNSVLVGSLVRINDDLFTVVGILEAQPPNPLVPVVFDDAVMLPMGAMRRIHPTAELGNILVQVKEHQNSPMLQVQLQEYLTSLFPTHLVNVQAPQQLLDGLRRQGDMFTYLLAGLGCISLLVGGIGVMNVMLMSVSERRREIGVRMALGARQSDIRTLFLFEAASLSAAGALLGVLLGIISAYIFTLISAWQFTLAVEAIPIGVACSMFIGLFFGIYPAMLASRLNPVQALRDE
SIO_010081: HQN60_RS15915
subclass of: SO_0000673
so part of: HQN60_RS15915
location: complement(3956..5164)
location: region:3956-5164:-1
so has part: feature:3956-5164:-1:exon

WP_173534796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3956-5164:-1:exon

HQN60_RS15920
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15920
old locus tag: HQN60_15920
so part of: sequence
location: complement(5157..5891)
location: region:5157-5891:-1
so has part: feature:5157-5891:-1:exon
subclass of: SO_0000010

position:5157:-1
position: 5157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5891:-1
position: 5891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5891:-1:exon

HQN60_RS15920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15920
old locus tag: HQN60_15920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010283063.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MKDISVDATERPLIFLDNISYTYQTRGAPLSILQGVSLGIQQGDDCAIVGASGSGKSTLLNILGLLDLPSSGQFFLSDRDVLATSADERADIRNREIGFIFQSFNLLAHLTALDNVALPLFYRGMSRQDSRELAWIQLDKVGLADRVKHRPADLSGGQRQRVAIARALVGDPSIILADEPTGNLDHSTSEDVLELLLALNKNAGVTLVMVTHDNVIASRFSRKIEVVRGQLVEANSAEKIISYA
SIO_010081: HQN60_RS15920
subclass of: SO_0000673
so part of: HQN60_RS15920
location: complement(5157..5891)
location: region:5157-5891:-1
so has part: feature:5157-5891:-1:exon

WP_173534797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5891:-1:exon

HQN60_RS15925
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15925
old locus tag: HQN60_15925
so part of: sequence
location: complement(6000..6677)
location: region:6000-6677:-1
so has part: feature:6000-6677:-1:exon
subclass of: SO_0000010

position:6000:-1
position: 6000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6677:-1
position: 6677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6000-6677:-1:exon

HQN60_RS15925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15925
old locus tag: HQN60_15925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQSQKLAILLTMAEEQTAANAALQKDLKEQIAALARATQAANQAVEAVKLAANDVQPAVKSGAAQAVEAGVGTSLKNVGDETKTALENALKPIIGGLAGAARSANDVEAKLDRVTASFGWKWALVAGGSTLGMIAAALLIAWGTVWYQRSQVEKLVTERNALQAEVVMLKAGAEDWAKRAGRAQLNRCNQPNNQPARLCVQVDPAAGTYGDSNKGETYMVIKNY
SIO_010081: HQN60_RS15925
subclass of: SO_0000673
so part of: HQN60_RS15925
location: complement(6000..6677)
location: region:6000-6677:-1
so has part: feature:6000-6677:-1:exon

WP_173534798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6000-6677:-1:exon

HQN60_RS15930
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15930
old locus tag: HQN60_15930
so part of: sequence
location: complement(6716..8137)
location: region:6716-8137:-1
so has part: feature:6716-8137:-1:exon
subclass of: SO_0000010

position:6716:-1
position: 6716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8137:-1
position: 8137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6716-8137:-1:exon

HQN60_RS15930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15930
old locus tag: HQN60_15930
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MASYHCSVKVGGKGKAAAHAAYISREGKYSDSPRYEDLECSGYGNMPKWAEHNPAHFWQSADEYERANGATYREIEVALPRELTPDQRRELVEDFVQNELGKLHAYQWAIHTPKAALEGAEQPHAHIMYSERTNDEIERDPSQYFKRYNAKNPERGGCKKDSAGTEERLLATRQSWAEIQNEHLARYGHAARVDHRSLKEQGIDREPEFHLGGIGVRKLAATDISALLVRRAAEGELERANRAVGLIDVSGNLALAKAEREQKQSEEAQASADKIRLENEVRDFARQATAQFKQDLAAQALAEQRAQAERQALEAAQRVEQQRQRLEQEKQRQLDEKKQALREAAIQRVKDLKDVLLRHRVGGPSPAVYVNSETIYAEVALDALKAAKLQPEQVDWKRVDFDAASSALQQRRPQAEVIAAITACSPRCVNADSAEKVPIWVAQLAAQIEPQRKPKPEPTQDQEPPAPSPGWSR
SIO_010081: HQN60_RS15930
subclass of: SO_0000673
so part of: HQN60_RS15930
location: complement(6716..8137)
location: region:6716-8137:-1
so has part: feature:6716-8137:-1:exon

WP_173534799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6716-8137:-1:exon

HQN60_RS15935
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15935
old locus tag: HQN60_15935
so part of: sequence
location: 8343..8783
location: region:8343-8783:1
so has part: feature:8343-8783:1:exon
subclass of: SO_0000010

position:8343:1
position: 8343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8783:1
position: 8783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8343-8783:1:exon

HQN60_RS15935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15935
old locus tag: HQN60_15935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004844889.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MATTDWLQDRIAHLKALKNPSEQQSLLILLAEKIERTTQEEKTFSALVRAEKAMLAATKARQAANQLINSENRKAKEAERKARNHRLIQQGALVDLAGLEHRSKGEILGLLLAGAKTIDPEKWASWKISGDTLLAEVEAKNKQAKL
SIO_010081: HQN60_RS15935
subclass of: SO_0000673
so part of: HQN60_RS15935
location: 8343..8783
location: region:8343-8783:1
so has part: feature:8343-8783:1:exon

WP_173534800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8343-8783:1:exon

HQN60_RS15940
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15940
old locus tag: HQN60_15940
so part of: sequence
location: complement(8915..9343)
location: region:8915-9343:-1
so has part: feature:8915-9343:-1:exon
subclass of: SO_0000010

position:8915:-1
position: 8915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9343:-1
position: 9343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8915-9343:-1:exon

HQN60_RS15940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15940
old locus tag: HQN60_15940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNPIVTFETGDIIEIDAGVWPDGTIRRRLAMVSDTDHRHFMILTNDQTEKTYPLLPSLNPEKIGNPSGWAFVLLQDYGEETYRQYSRLQELFLELPEIDSMTYYRALYWAKQNLNFDPALALQYGQEETKAAWHARLGFIP
SIO_010081: HQN60_RS15940
subclass of: SO_0000673
so part of: HQN60_RS15940
location: complement(8915..9343)
location: region:8915-9343:-1
so has part: feature:8915-9343:-1:exon

WP_173534801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8915-9343:-1:exon

HQN60_RS15945
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15945
old locus tag: HQN60_15945
so part of: sequence
location: complement(9383..10279)
location: region:9383-10279:-1
so has part: feature:9383-10279:-1:exon
subclass of: SO_0000010

position:9383:-1
position: 9383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10279:-1
position: 10279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9383-10279:-1:exon

HQN60_RS15945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15945
old locus tag: HQN60_15945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008168811.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAREGVSYEQVAAVADALVGDGQQATIRAIRERLGTGSPNTIHRHLAAWRDARPQMAAVVAALPDALTAAIAAEIAKAASTARAEVEGRLVLAQTEASELAAVGEILEGERDTLAEHIVILTTERDREAATAAERATELERQGQELQRERSAAEAARIEVAQTRNKLENQAEKLTEQQALIAQLQAQLELERQGRIDAEKLAAVTAAKLEAAEHRAQVAEAATDELKRQLNQVRELATLESSKAEMANTTIATLNGKIESLQTQIQQQARELDAAQQEVKAALQTAAELRGQLTANAK
SIO_010081: HQN60_RS15945
subclass of: SO_0000673
so part of: HQN60_RS15945
location: complement(9383..10279)
location: region:9383-10279:-1
so has part: feature:9383-10279:-1:exon

WP_173534802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9383-10279:-1:exon

HQN60_RS15950
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15950
old locus tag: HQN60_15950
so part of: sequence
location: complement(11041..12234)
location: region:11041-12234:-1
so has part: feature:11041-12234:-1:exon
subclass of: SO_0000010

position:11041:-1
position: 11041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12234:-1
position: 12234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11041-12234:-1:exon

HQN60_RS15950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15950
old locus tag: HQN60_15950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MAEMKTLSVADLEANPEAYKVAMTGYIVSRGAIPFTDEKATPAFFAAMFGDPQFLAAFENAKAKIAERNAGAPDLDEKPEIAAPRQGSIFELLSQRTAEAKQRKDASLKTRESESLTTDNPNLAPVRHLQADFFVCDLVDYALKDDQASMEAPIFSLSTREDLKVWKWTSEDGKKSVEVQPSVCGRATQHDKDVLIYCTSQLTEAINQKKKPSKTVRFTAYDLLVATNRNICGRDYDRLKAALDRLAGTRIKTDIKTGGERATKNFGLIDSWEIVEKSPEDSRMVAIEVTLSDWLFSAIQAHEVLTILPDYFRLRKPLERRLYEIARKHVGKQGSWKISLSALHGKSGSTDVVRNFKSKLKEIIEADTIPQYRYQLCSGDVVMVYDRDPNAALKSLL
SIO_010081: HQN60_RS15950
subclass of: SO_0000673
so part of: HQN60_RS15950
location: complement(11041..12234)
location: region:11041-12234:-1
so has part: feature:11041-12234:-1:exon

WP_254456729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11041-12234:-1:exon

HQN60_RS15955
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15955
old locus tag: HQN60_15955
so part of: sequence
location: complement(12234..12476)
location: region:12234-12476:-1
so has part: feature:12234-12476:-1:exon
subclass of: SO_0000010

position:12476:-1
position: 12476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12234-12476:-1:exon

HQN60_RS15955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15955
old locus tag: HQN60_15955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKTASLTSGLVAKKGQAAPAVVQHDALETKPQVLDYYKALTVKLDRERYEALKNAGIKLDKKSQEIFVEALDSWLKQIA
SIO_010081: HQN60_RS15955
subclass of: SO_0000673
so part of: HQN60_RS15955
location: complement(12234..12476)
location: region:12234-12476:-1
so has part: feature:12234-12476:-1:exon

WP_173534803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12234-12476:-1:exon

HQN60_RS15960
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15960
old locus tag: HQN60_15960
so part of: sequence
location: complement(12489..13139)
location: region:12489-13139:-1
so has part: feature:12489-13139:-1:exon
subclass of: SO_0000010

position:12489:-1
position: 12489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13139:-1
position: 13139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12489-13139:-1:exon

HQN60_RS15960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15960
old locus tag: HQN60_15960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013833061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRTLVVASQKGGVGKTTIAGHLAVMAELSNAGPVALIDTDPQGSLSSWWNERQAERPLFASVDIANLSMHLKKLAKAGVKLAIIDTPPAVTGTIRDVLAVADLVLIPTRPSPHDLRAVGSTVDLVEQAGKRMVFVINGAAARARITGEAAVALSQHGTVAPVTLYQRTDFAASMIDGRTVQELDANSKSAEEIKNLWMYVFTQIHKVDTVRTNVTA
SIO_010081: HQN60_RS15960
subclass of: SO_0000673
so part of: HQN60_RS15960
location: complement(12489..13139)
location: region:12489-13139:-1
so has part: feature:12489-13139:-1:exon

WP_173534804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12489-13139:-1:exon

HQN60_RS15965
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15965
old locus tag: HQN60_15965
so part of: sequence
location: complement(13205..13495)
location: region:13205-13495:-1
so has part: feature:13205-13495:-1:exon
subclass of: SO_0000010

position:13205:-1
position: 13205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13495:-1
position: 13495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13205-13495:-1:exon

HQN60_RS15965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15965
old locus tag: HQN60_15965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004668268.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPRLIWTPPALIGMQRSYRFLALKNKDAASRAVKAIRAGAQLIAQHPEIGRPAEEMEPEYREWLVDFGDSGYVLLYRFDVEVIAIVSVRHQKEVGY
SIO_010081: HQN60_RS15965
subclass of: SO_0000673
so part of: HQN60_RS15965
location: complement(13205..13495)
location: region:13205-13495:-1
so has part: feature:13205-13495:-1:exon

WP_173534805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13205-13495:-1:exon

HQN60_RS15970
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15970
old locus tag: HQN60_15970
so part of: sequence
location: complement(13483..13773)
location: region:13483-13773:-1
so has part: feature:13483-13773:-1:exon
subclass of: SO_0000010

position:13483:-1
position: 13483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13773:-1
position: 13773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13483-13773:-1:exon

HQN60_RS15970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15970
old locus tag: HQN60_15970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018412614.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MTAAATKAVAVKIDFDIRERIKRLAESRHRTSHWIMREAINQYVEREEKREAFRQEGMQAWHAYQENGLHVTLDEADAWLANLEAGNDVEPPECHV
SIO_010081: HQN60_RS15970
subclass of: SO_0000673
so part of: HQN60_RS15970
location: complement(13483..13773)
location: region:13483-13773:-1
so has part: feature:13483-13773:-1:exon

WP_173534806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13483-13773:-1:exon

HQN60_RS15975
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15975
old locus tag: HQN60_15975
so part of: sequence
location: complement(13867..14433)
location: region:13867-14433:-1
so has part: feature:13867-14433:-1:exon
subclass of: SO_0000010

position:13867:-1
position: 13867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14433:-1
position: 14433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13867-14433:-1:exon

HQN60_RS15975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15975
old locus tag: HQN60_15975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000904911.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MYIGYARVSTQEQDTQAQITALTEAGCERIYQEKASGGRWDRPELHRLLDQLRKDDVVVVWKLDRLSRSLKDLLLVLEKIEAAGASFTSLTEAIDTGTPAGRMMMQIVGSFAEFERAMLRERTKNGLDAARKAGRVGGRRPKLTKQQQTEIISLVSSGQKSGADAARLFQVHPSTVVRLLAKHALTKT
SIO_010081: HQN60_RS15975
subclass of: SO_0000673
so part of: HQN60_RS15975
location: complement(13867..14433)
location: region:13867-14433:-1
so has part: feature:13867-14433:-1:exon

WP_173534807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13867-14433:-1:exon

HQN60_RS15980
type: Gene
subclass of: SO_0000704
RO_0002162: 2739061
locus tag: HQN60_RS15980
old locus tag: HQN60_15980
so part of: sequence
location: 14719..15171
location: region:14719-15171:1
so has part: feature:14719-15171:1:exon
subclass of: SO_0000010

position:14719:1
position: 14719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15171:1
position: 15171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14719-15171:1:exon

HQN60_RS15980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2739061
locus tag: HQN60_RS15980
old locus tag: HQN60_15980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNKILAALLVCASIPALAVNSSISKSASPGTVTVTSSGRTTSSFFGILNGDFASGTYNKPKKLTGITWTSTSYPTVTTETVSLCYFTPYNLTSPAMCIPIQANASGSTTQFNNLQFGAGAQISIRHDLSAPTQVATPAGRDSIVVNYSY
SIO_010081: HQN60_RS15980
subclass of: SO_0000673
so part of: HQN60_RS15980
location: 14719..15171
location: region:14719-15171:1
so has part: feature:14719-15171:1:exon

WP_173534808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14719-15171:1:exon