Halorubrum salinarum strain RHB-C plasmid pHAR02, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.
Halorubrum RHB-C sp.nov., an extremely halophilic archaeon isolated from solar salt farm
Submitted (20-MAY-2020) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP053943.1.\nBacteria and source DNA available from Korea Research Institution\nof Bioscience and Biotechnology.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2019\nAssembly Method :: HGAP v. 3.0; SMRT v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 241.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:01:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,379\nCDSs (total) :: 3,323\nGenes (coding) :: 3,276\nCDSs (with protein) :: 3,276\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 28 of 47\nPseudo Genes (incomplete) :: 29 of 47\nPseudo Genes (internal stop) :: 12 of 47\nPseudo Genes (multiple problems) :: 18 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452470.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458769.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825412.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141888.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007703482.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096876.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273877.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004058697.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006650711.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008385082.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048598.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488186.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443531.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327227.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443524.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183375.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426096.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443417.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342076.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182403.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048615.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458713.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580521.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143087.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054273.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008012356.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004057837.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945098.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594560.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004594561.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275110.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057442.1
COORDINATES: protein motif:HMM:NF025627.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594566.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: protein motif:HMM:NF014639.2
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_004059603.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007998662.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017342953.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_008097213.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183218.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594599.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378268.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788605.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078100.1
COORDINATES: protein motif:HMM:NF012355.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_007545190.1
COORDINATES: similar to AA sequence:RefSeq:WP_009374759.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044390.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF017200.2
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008094428.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762253.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094419.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060240.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762322.1
COORDINATES: similar to AA sequence:RefSeq:WP_008848933.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094441.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594620.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594621.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364388.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364385.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538723.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538722.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_006093025.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093024.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458794.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006885426.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048679.1
type II restriction endonuclease subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_006885427.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885428.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865877.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904193.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904194.1
GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1