Halorubrum salinarum strain RHB-C plasmid pHAR01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.
Halorubrum RHB-C sp.nov., an extremely halophilic archaeon isolated from solar salt farm
Submitted (20-MAY-2020) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP053942.1.\nBacteria and source DNA available from Korea Research Institution\nof Bioscience and Biotechnology.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2019\nAssembly Method :: HGAP v. 3.0; SMRT v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 241.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:01:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,379\nCDSs (total) :: 3,323\nGenes (coding) :: 3,276\nCDSs (with protein) :: 3,276\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 28 of 47\nPseudo Genes (incomplete) :: 29 of 47\nPseudo Genes (internal stop) :: 12 of 47\nPseudo Genes (multiple problems) :: 18 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015319753.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008847762.1
COORDINATES: similar to AA sequence:RefSeq:WP_008442655.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054120.1
COORDINATES: similar to AA sequence:RefSeq:WP_017344459.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377430.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007188717.1
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF014871.2
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006114616.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533157.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113937.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006627888.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014864286.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006056175.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911455.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013458316.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221577.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660096.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111954.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006111953.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847078.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008364301.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF025157.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004966408.1
DUF3179 domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630612.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630611.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444032.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788855.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014811.1
COORDINATES: similar to AA sequence:RefSeq:WP_006112275.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847677.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008847676.1
COORDINATES: similar to AA sequence:RefSeq:WP_017344018.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966409.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630600.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788868.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050724.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003556.1
COORDINATES: similar to AA sequence:RefSeq:WP_008441517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008849632.1
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004045723.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: similar to AA sequence:RefSeq:WP_008003538.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003539.1
COORDINATES: similar to AA sequence:RefSeq:WP_007999397.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045716.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008849625.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015909992.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045702.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045700.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630595.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885508.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006630594.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630578.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630577.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014813.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004516732.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630574.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885500.1
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF012245.2
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_008894355.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006630573.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006630572.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_006630585.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006885506.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050600.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006630567.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014005.2
COORDINATES: protein motif:HMM:NF020123.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183340.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004053502.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004516402.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004048555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048554.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007344289.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344285.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008847061.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599226.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_017342177.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012289545.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885277.1
COORDINATES: protein motif:HMM:NF028236.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_011324022.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318147.1
DUF2080 family transposase-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_008322169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443578.1
COORDINATES: protein motif:HMM:NF028237.2
COORDINATES: similar to AA sequence:RefSeq:WP_008442509.1
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015790086.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649990.1
COORDINATES: protein motif:HMM:NF015378.2
COORDINATES: protein motif:HMM:NF024804.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007343992.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008847016.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630785.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847012.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344084.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017342465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443197.1
COORDINATES: similar to AA sequence:RefSeq:WP_017344325.1
COORDINATES: similar to AA sequence:RefSeq:WP_004046385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443195.1
COORDINATES: protein motif:HMM:NF017394.2
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_004595756.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008159055.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005555314.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004055789.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595762.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651371.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007997638.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997639.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789442.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF027641.2
glycoside hydrolase family 99-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216283.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: protein motif:HMM:NF012706.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007977176.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011570766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013979575.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076724.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006112280.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012442.2
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005492670.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595446.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342158.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595402.1
COORDINATES: similar to AA sequence:RefSeq:WP_006114856.1
COORDINATES: similar to AA sequence:RefSeq:WP_018239641.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_008848061.1
COORDINATES: similar to AA sequence:RefSeq:WP_049912812.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966882.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594618.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419700.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431920.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007109916.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013382.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014052718.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: similar to AA sequence:RefSeq:WP_007275849.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693652.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180166.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344276.1
COORDINATES: similar to AA sequence:RefSeq:WP_009761760.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741384.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076425.1
COORDINATES: similar to AA sequence:RefSeq:WP_008093093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011223724.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015408666.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762150.1
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_013880950.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009761758.1
COORDINATES: similar to AA sequence:RefSeq:WP_014041016.1
GO:0050415 - formimidoylglutamase activity [Evidence IEA]
GO:0019556 - histidine catabolic process to glutamate and formamide [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004054225.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007741378.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012660251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762152.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762153.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762154.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762155.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890474.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310310.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004592358.1
COORDINATES: similar to AA sequence:RefSeq:WP_004597067.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein