Vagococcus fluvialis strain 36B2 plasmid p36B2_p4, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
High-quality genome assembly reveals abundance of mobile genetic elements in sponge-isolated Vagococcus fluvialis strains
Submitted (17-AUG-2021) Ecology of Aquatic Systems, Universite Libre de Bruxelles, Boulevard du Triomphe, Brussels 1050, Belgium
REFSEQ INFORMATION: The reference sequence is identical to\nCP081465.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. MAR-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 278x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/02/2022 04:19:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,945\nCDSs (total) :: 2,841\nGenes (coding) :: 2,813\nCDSs (with protein) :: 2,813\nGenes (RNA) :: 104\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 10 of 28\nPseudo Genes (incomplete) :: 19 of 28\nPseudo Genes (internal stop) :: 5 of 28\nPseudo Genes (multiple problems) :: 5 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF024139.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002296860.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator