Pseudonocardia broussonetiae strain Gen 01 plasmid unnamed3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.
Submitted (15-MAY-2020) College of Life Science and Technology, Central South University of Forestry and Technology, No. 498, Shaoshan South Road, Changsha, Hunan 410004, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP053567.1.\nBacteria and source DNA available from Mo.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 03:53:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,087\nCDSs (total) :: 7,032\nGenes (coding) :: 6,950\nCDSs (with protein) :: 6,950\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 21 of 82\nPseudo Genes (incomplete) :: 57 of 82\nPseudo Genes (internal stop) :: 8 of 82\nPseudo Genes (multiple problems) :: 4 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudonocardia broussonetiae
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005458537.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01613.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_019075547.1
COORDINATES: protein motif:HMM:NF017148.2
COORDINATES: similar to AA sequence:RefSeq:WP_018587937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012183794.1
COORDINATES: similar to AA sequence:RefSeq:WP_020385927.1
COORDINATES: similar to AA sequence:RefSeq:WP_020385928.1
phage gp6-like head-tail connector protein
COORDINATES: protein motif:HMM:TIGR01554.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016471.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]