Pseudonocardia broussonetiae strain Gen 01 plasmid unnamed2, complete sequence.
type: Entry
definition: Pseudonocardia broussonetiae strain Gen 01 plasmid unnamed2, complete sequence.
sequence version: NZ_CP053566.1
sequence date: 2023-03-17
sequence: sequence
division: CON
label: NZ_CP053566.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14923072
keyword: RefSeq
source: Pseudonocardia broussonetiae
organism: Pseudonocardia broussonetiae
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP053566.1.\nBacteria and source DNA available from Mo.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 03:53:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,087\nCDSs (total) :: 7,032\nGenes (coding) :: 6,950\nCDSs (with protein) :: 6,950\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 21 of 82\nPseudo Genes (incomplete) :: 57 of 82\nPseudo Genes (internal stop) :: 8 of 82\nPseudo Genes (multiple problems) :: 4 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24228
topology: circular
so has quality: SO_0000988
location: 1..24228
location: region:1-24228:1
RO_0002162: 2736640

NZ_CP053566
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14923072
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Mo, P.
journal: Submitted (15-MAY-2020) College of Life Science and Technology, Central South University of Forestry and Technology, No. 498, Shaoshan South Road, Changsha, Hunan 410004, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24228:1
position: 24228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24228:1:source
so part of: sequence
organism: Pseudonocardia broussonetiae
mol type: genomic DNA
strain: Gen 01
isolation source: Broussonetia papyrifera
type material: type strain of Pseudonocardia broussonetiae
plasmid: unnamed2
country: China
collection date: 2019-04-20

2736640
type: Taxonomy
SIO_000068: taxonomy

HOP40_RS35005
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35005
old locus tag: HOP40_35020
so part of: sequence
location: complement(365..643)
location: region:365-643:-1
so has part: feature:365-643:-1:exon
subclass of: SO_0000010

position:365:-1
position: 365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643:-1
position: 643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365-643:-1:exon

HOP40_RS35005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35005
old locus tag: HOP40_35020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGLTSLTSMPRDVRSAVKREVGLQKGRVIVQGFRIRGLEWVAHVGVRSVANMSRMGEAAAAECPETRGRVDAVVDIASAGVAGLVAEQAQG
SIO_010081: HOP40_RS35005
subclass of: SO_0000673
so part of: HOP40_RS35005
location: complement(365..643)
location: region:365-643:-1
so has part: feature:365-643:-1:exon

WP_172170058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:365-643:-1:exon

HOP40_RS35010
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35010
old locus tag: HOP40_35025
so part of: sequence
location: complement(713..2047)
location: region:713-2047:-1
so has part: feature:713-2047:-1:exon
subclass of: SO_0000010

position:713:-1
position: 713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2047:-1
position: 2047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:713-2047:-1:exon

HOP40_RS35010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35010
old locus tag: HOP40_35025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASTSYHYETMRTARALLAGAVLLLALCVGLVRPLVQAGVYGALGAAVLIVVTGAVCCLAVQHSLAAGWMFEHNVRRRFRAVCRERRLTTRDDRDNVVYPGLSRLIGNGAVLNARIRPLFGQSLADWERAAPAFALAYAVAAVRFRDNGDGSLTLLAGYQPLEAREFVMNEAEPVEGVDWRERLASVVVGTTEGGQPFALPFLDSHILIAGITGAGKGSVVWSAALALLPAAKAGVVRFWGIDPKRLELAMGRGFFGDRYANTDEQAVQLLERAAAEMLERAEGLAGHARRAEPSVLHPVNVLFIDELGYLSALMPDRKLRERAEKALSAILVLGRAAGFVVIGALQDPRKEVLNFRDLFPTAVAMRLRKPMVDLVLGAGMYEAGAVCDQIPPPKAGGAGVAFVVSEDSGIPVCVRFTWCPDDLIRKTAAELEPLAMRPQIAAN
SIO_010081: HOP40_RS35010
subclass of: SO_0000673
so part of: HOP40_RS35010
location: complement(713..2047)
location: region:713-2047:-1
so has part: feature:713-2047:-1:exon

WP_172170061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:713-2047:-1:exon

HOP40_RS35015
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35015
old locus tag: HOP40_35030
so part of: sequence
location: complement(2077..2448)
location: region:2077-2448:-1
so has part: feature:2077-2448:-1:exon
subclass of: SO_0000010

position:2077:-1
position: 2077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2448:-1
position: 2448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2077-2448:-1:exon

HOP40_RS35015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35015
old locus tag: HOP40_35030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDTVKVAPETFSNIEFRGAMPKTAYVPQGNVAGPQKQTSNGTPIWAVRVLAETTRGLRVKEDLLTVTVPMQVDPTEKFERGQSIELVSLTFGVTPKREGNGFSTWLSADGIQPAGLGKAAAS
SIO_010081: HOP40_RS35015
subclass of: SO_0000673
so part of: HOP40_RS35015
location: complement(2077..2448)
location: region:2077-2448:-1
so has part: feature:2077-2448:-1:exon

WP_172170064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2077-2448:-1:exon

HOP40_RS35020
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35020
old locus tag: HOP40_35035
so part of: sequence
location: 2650..3057
location: region:2650-3057:1
so has part: feature:2650-3057:1:exon
subclass of: SO_0000010

position:2650:1
position: 2650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3057:1
position: 3057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2650-3057:1:exon

HOP40_RS35020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35020
old locus tag: HOP40_35035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MVNAMVSDSDVDDDPDRLNIGWSTGVRNSSSNEPAPPSKPPPAPDYVDRAFYDLGSLMEQAAMLKNISPSRQMVTPQVLINMRKMADGIQDVTRRFMLHALRDQIITQKQAAEIIGVHENTVARWVKEDQARRQT
SIO_010081: HOP40_RS35020
subclass of: SO_0000673
so part of: HOP40_RS35020
location: 2650..3057
location: region:2650-3057:1
so has part: feature:2650-3057:1:exon

WP_172170066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2650-3057:1:exon

HOP40_RS35025
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35025
old locus tag: HOP40_35040
so part of: sequence
location: complement(3643..4014)
location: region:3643-4014:-1
so has part: feature:3643-4014:-1:exon
subclass of: SO_0000010

position:3643:-1
position: 3643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4014:-1
position: 4014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3643-4014:-1:exon

HOP40_RS35025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35025
old locus tag: HOP40_35040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTRRRAGDTKGALSRGLLAARSAPPAAPAPEVPDEVVAEVPVAVTTPEPVRTAKQRTSKFTANLDPQLALAFDELAMAARRRLERRVDKLDVLKALIMLAADDASLRDQVINEIENSGGGRR
SIO_010081: HOP40_RS35025
subclass of: SO_0000673
so part of: HOP40_RS35025
location: complement(3643..4014)
location: region:3643-4014:-1
so has part: feature:3643-4014:-1:exon

WP_172170069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3643-4014:-1:exon

HOP40_RS35030
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35030
old locus tag: HOP40_35045
so part of: sequence
location: complement(4011..4631)
location: region:4011-4631:-1
so has part: feature:4011-4631:-1:exon
subclass of: SO_0000010

position:4011:-1
position: 4011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4631:-1
position: 4631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4011-4631:-1:exon

HOP40_RS35030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35030
old locus tag: HOP40_35045
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIKMKICVGNLKGGVGKTTTAVHLALGLSRSGRTLLVDADPEQPQCYEWSETAGEDWPAAQCIVLHLPTRDLAKKAGPMLADYEHIVFDVGPKNPSLLRQALMLSDDLIIPVRPSTAELHEVPKTVELAAEVDELHPLRATVLLVQVRSGTRTAAEARGLLDELGVPVFETEIRLLERYGLSFGSVPPELGDYERVLTELTQEVTA
SIO_010081: HOP40_RS35030
subclass of: SO_0000673
so part of: HOP40_RS35030
location: complement(4011..4631)
location: region:4011-4631:-1
so has part: feature:4011-4631:-1:exon

WP_172170072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4011-4631:-1:exon

HOP40_RS35035
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35035
old locus tag: HOP40_35050
so part of: sequence
location: complement(4812..5132)
location: region:4812-5132:-1
so has part: feature:4812-5132:-1:exon
subclass of: SO_0000010

position:4812:-1
position: 4812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5132:-1
position: 5132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4812-5132:-1:exon

HOP40_RS35035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35035
old locus tag: HOP40_35050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010237011.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYDVTIQKLIDAGWYPTDGQPSVAAALDMFAQQASDGAHLPDDAPAIWYALCQELRWLADYHERNLVRHLKYDRGLTWEQVAGAVDAGLSSRQAAQARWSRLISP
SIO_010081: HOP40_RS35035
subclass of: SO_0000673
so part of: HOP40_RS35035
location: complement(4812..5132)
location: region:4812-5132:-1
so has part: feature:4812-5132:-1:exon

WP_172170075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4812-5132:-1:exon

HOP40_RS35040
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35040
old locus tag: HOP40_35055
so part of: sequence
location: 5842..6057
location: region:5842-6057:1
so has part: feature:5842-6057:1:exon
subclass of: SO_0000010

position:5842:1
position: 5842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6057:1
position: 6057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5842-6057:1:exon

HOP40_RS35040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35040
old locus tag: HOP40_35055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAYELTVPGEANHGLIRHLMVLVTSMMRYLAPSLYCRSWAPWCRIIITVVVIVVLVAGVQLLGQLLPVYTM
SIO_010081: HOP40_RS35040
subclass of: SO_0000673
so part of: HOP40_RS35040
location: 5842..6057
location: region:5842-6057:1
so has part: feature:5842-6057:1:exon

WP_172170078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5842-6057:1:exon

HOP40_RS35045
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35045
old locus tag: HOP40_35060
so part of: sequence
location: complement(6145..6537)
location: region:6145-6537:-1
so has part: feature:6145-6537:-1:exon
subclass of: SO_0000010

position:6145:-1
position: 6145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6537:-1
position: 6537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145-6537:-1:exon

HOP40_RS35045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35045
old locus tag: HOP40_35060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTIVNAHLSAPKNEKLKIVEVNAKCQINLSHFEGVEVGQRVKYRVRCWITGDDSSDKLLYLGVWEIKSPGSHALSYARSVGLDGVLDHDSGDDEITARFEVELVSLYGLYPGGVTVATANSNKISNIHY
SIO_010081: HOP40_RS35045
subclass of: SO_0000673
so part of: HOP40_RS35045
location: complement(6145..6537)
location: region:6145-6537:-1
so has part: feature:6145-6537:-1:exon

WP_172170081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6145-6537:-1:exon

HOP40_RS35050
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35050
old locus tag: HOP40_35065
so part of: sequence
location: 6735..7409
location: region:6735-7409:1
so has part: feature:6735-7409:1:exon
subclass of: SO_0000010

position:6735:1
position: 6735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7409:1
position: 7409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6735-7409:1:exon

HOP40_RS35050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35050
old locus tag: HOP40_35065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKLAMPDLPEGRLKELMRALHELHARAGWPSTREIAHSQDFSYTTVHQLFTKTNQLPKLPVLLAIVSNLASISDPNREEQILDKFDALWCAAAATPPAGTEPTWSKDRLDLAHYFLEYNGDLVLPVLGTQEKVVLSMLLDSYSLNQINAEMWAGPKSLRIVYPINSEYATRLFEKLCMNFGARTHPEARPRFRGRVYNPNANMQYLRRTRFNVLHLESVIADV
SIO_010081: HOP40_RS35050
subclass of: SO_0000673
so part of: HOP40_RS35050
location: 6735..7409
location: region:6735-7409:1
so has part: feature:6735-7409:1:exon

WP_172170055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6735-7409:1:exon

HOP40_RS35055
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35055
old locus tag: HOP40_35070
so part of: sequence
location: 8062..8295
location: region:8062-8295:1
so has part: feature:8062-8295:1:exon
subclass of: SO_0000010

position:8062:1
position: 8062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8295:1
position: 8295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8062-8295:1:exon

HOP40_RS35055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35055
old locus tag: HOP40_35070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAERVTVSFEPAIAQRVRQCGSRVRGGQSGYLARLVQQDAVREAGEALALWYAEQGGEQYVVDALTEAAAAQDQAS
SIO_010081: HOP40_RS35055
subclass of: SO_0000673
so part of: HOP40_RS35055
location: 8062..8295
location: region:8062-8295:1
so has part: feature:8062-8295:1:exon

WP_172170084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8062-8295:1:exon

HOP40_RS35060
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35060
old locus tag: HOP40_35075
so part of: sequence
location: 8406..8603
location: region:8406-8603:1
so has part: feature:8406-8603:1:exon
subclass of: SO_0000010

position:8406:1
position: 8406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8603:1
position: 8603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8406-8603:1:exon

HOP40_RS35060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35060
old locus tag: HOP40_35075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLGLQVVERDPGSILAVRLGSLGWAVVTTVEAVLKSRLGKVAGMATAEEQEALNQALKAALDLD
SIO_010081: HOP40_RS35060
subclass of: SO_0000673
so part of: HOP40_RS35060
location: 8406..8603
location: region:8406-8603:1
so has part: feature:8406-8603:1:exon

WP_172170087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8406-8603:1:exon

HOP40_RS36555
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS36555
so part of: sequence
location: 8974..9102
location: region:8974-9102:1
so has part: feature:8974-9102:1:exon
subclass of: SO_0000010

position:8974:1
position: 8974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9102:1
position: 9102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8974-9102:1:exon

HOP40_RS36555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS36555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKHHDKQDGPPWGPARLVLALMAVVVQIFDWLDDHDWWLWW
SIO_010081: HOP40_RS36555
subclass of: SO_0000673
so part of: HOP40_RS36555
location: 8974..9102
location: region:8974-9102:1
so has part: feature:8974-9102:1:exon

WP_275691380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8974-9102:1:exon

HOP40_RS35065
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35065
old locus tag: HOP40_35080
so part of: sequence
location: complement(9366..10721)
location: region:9366-10721:-1
so has part: feature:9366-10721:-1:exon
subclass of: SO_0000010

position:9366:-1
position: 9366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10721:-1
position: 10721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9366-10721:-1:exon

HOP40_RS35065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35065
old locus tag: HOP40_35080
inference: COORDINATES: protein motif:HMM:NF013603.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MAESLQPHLDAPANRRARRFRARIEVAHERKVGHDGDGGRRREPRRPAEPLGRSANKSSPPHSTPEERRERKHAKRRERHSLRYRLRQVTTLKRVKDCGHVSINGEGSGPALRLGVGKGGRIAGFSGLAHCGSVWACPVCSAKIATRRAEELADLMRYALEQGCTASMVTLTMRHNQRQSLADCWEALSKAWARVTSGKQWVSDQATAGLQGWVKAVEVTRGKNGWHVHLHVLMIWRGEISEDMAKHVGGRMHARWTRALQRRGFDSWRDSGGLDVRLATLDPVKGGGLHEYFVKLSHEITGGQAKLARGGGRTPFQLLTEGLATGLADDIERWWEWEKASRGRRQIAWSKGLREWAKVEPEQSDEEIVEEELPGEELLLIRPDSWRALRSHPDRVCELLEAAEAGGFAGAAALLDDWGLAWMVGRSAPPPLTKVQLDAYRAFPRQLEPTA
SIO_010081: HOP40_RS35065
subclass of: SO_0000673
so part of: HOP40_RS35065
location: complement(9366..10721)
location: region:9366-10721:-1
so has part: feature:9366-10721:-1:exon

WP_172170090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9366-10721:-1:exon

HOP40_RS35070
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35070
old locus tag: HOP40_35085
so part of: sequence
location: complement(11579..11755)
location: region:11579-11755:-1
so has part: feature:11579-11755:-1:exon
subclass of: SO_0000010

position:11579:-1
position: 11579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11755:-1
position: 11755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11579-11755:-1:exon

HOP40_RS35070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35070
old locus tag: HOP40_35085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRGLLGRLLMFLLLLLFAAWVLRTVHDWVVPALPSLGVFVGLVLVLVLLVHLRRRRRA
SIO_010081: HOP40_RS35070
subclass of: SO_0000673
so part of: HOP40_RS35070
location: complement(11579..11755)
location: region:11579-11755:-1
so has part: feature:11579-11755:-1:exon

WP_172170093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11579-11755:-1:exon

HOP40_RS35075
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35075
old locus tag: HOP40_35090
so part of: sequence
location: complement(11755..12096)
location: region:11755-12096:-1
so has part: feature:11755-12096:-1:exon
subclass of: SO_0000010

position:12096:-1
position: 12096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11755-12096:-1:exon

HOP40_RS35075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35075
old locus tag: HOP40_35090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVTGLVVAVVVLVVVGLVFAFMAGAGVGAAFVLNDLRPETVVERTERRVGEVITQMQAVHDAAMQELVRLPEERGDLPEDVDSDAGRSRTPVRGPNIMRLPESYYSWNRVAG
SIO_010081: HOP40_RS35075
subclass of: SO_0000673
so part of: HOP40_RS35075
location: complement(11755..12096)
location: region:11755-12096:-1
so has part: feature:11755-12096:-1:exon

WP_172170096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11755-12096:-1:exon

HOP40_RS35080
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35080
old locus tag: HOP40_35095
so part of: sequence
location: complement(12485..12763)
location: region:12485-12763:-1
so has part: feature:12485-12763:-1:exon
subclass of: SO_0000010

position:12485:-1
position: 12485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12763:-1
position: 12763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12485-12763:-1:exon

HOP40_RS35080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35080
old locus tag: HOP40_35095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGLTSLTSMPRDVRSAVKREVGLQKGRVIVQGFRIRGLEWVAHVGVRSVANMSRMGEAAAAECPETRGRVDAVVDIASAGVAGLVAEQAQG
SIO_010081: HOP40_RS35080
subclass of: SO_0000673
so part of: HOP40_RS35080
location: complement(12485..12763)
location: region:12485-12763:-1
so has part: feature:12485-12763:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12485-12763:-1:exon

HOP40_RS35085
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35085
old locus tag: HOP40_35100
so part of: sequence
location: complement(12833..14095)
location: region:12833-14095:-1
so has part: feature:12833-14095:-1:exon
subclass of: SO_0000010

position:12833:-1
position: 12833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14095:-1
position: 14095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12833-14095:-1:exon

HOP40_RS35085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35085
old locus tag: HOP40_35100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALCVGLVRPLVQAGVYGALGAAVLIVVTGAVCCLAVQHSLAAGWMFEHNVRRRFRAVCRERRLTTRDDRDNVVYPGLSRLIGNGAVLNARIRPLFGQSLADWERAAPAFALAYAVAAVRFRDNGDGSLTLLAGYQPLEAREFVMNEAEPVEGVDWRERLASVVVGTTEGGQPFALPFLDSHILIAGITGAGKGSVVWSAALALLPAAKAGVVRFWGIDPKRLELAMGRGFFGDRYANTDEQAVQLLERAAAEMLERAEGLAGHARRAEPSVLHPVNVLFIDELGYLSALMPDRKLRERAEKALSAILVLGRAAGFVVIGALQDPRKEVLNFRDLFPTAVAMRLRKPMVDLVLGAGMYEAGAVCDQIPPPKAGGAGVAFVVSEDSGIPVCVRFTWCPDDLIRKTAAELEPLAMRPQIAAN
SIO_010081: HOP40_RS35085
subclass of: SO_0000673
so part of: HOP40_RS35085
location: complement(12833..14095)
location: region:12833-14095:-1
so has part: feature:12833-14095:-1:exon

WP_172170099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12833-14095:-1:exon

HOP40_RS35090
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35090
old locus tag: HOP40_35105
so part of: sequence
location: complement(14198..14569)
location: region:14198-14569:-1
so has part: feature:14198-14569:-1:exon
subclass of: SO_0000010

position:14198:-1
position: 14198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14569:-1
position: 14569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14569:-1:exon

HOP40_RS35090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35090
old locus tag: HOP40_35105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDTVKVAPETFSNIEFRGAMPKTAYVPQGNVAGPQKQTSNGTPIWAVRVLAETTRGLRVKEDLLTVTVPMQVDPTEKFERGQSIELVSLTFGVTPKREGNGFSTWLSADGIQPAGLGKAAAS
SIO_010081: HOP40_RS35090
subclass of: SO_0000673
so part of: HOP40_RS35090
location: complement(14198..14569)
location: region:14198-14569:-1
so has part: feature:14198-14569:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14569:-1:exon

HOP40_RS35095
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35095
old locus tag: HOP40_35110
so part of: sequence
location: 14770..15177
location: region:14770-15177:1
so has part: feature:14770-15177:1:exon
subclass of: SO_0000010

position:14770:1
position: 14770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15177:1
position: 15177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15177:1:exon

HOP40_RS35095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35095
old locus tag: HOP40_35110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MVNAMVSDSDVDDDPDRLNIGWSTGVRNSSSNEPAPPSKPPPAPDYVDRAFYDLGSLMEQAAMLKNISPSRQMVTPQVLINMRKMADGIQDVTRRFMLHALRDQIITQKQAAEIIGVHENTVARWVKEDQARRQT
SIO_010081: HOP40_RS35095
subclass of: SO_0000673
so part of: HOP40_RS35095
location: 14770..15177
location: region:14770-15177:1
so has part: feature:14770-15177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15177:1:exon

HOP40_RS35100
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35100
old locus tag: HOP40_35115
so part of: sequence
location: complement(15763..16134)
location: region:15763-16134:-1
so has part: feature:15763-16134:-1:exon
subclass of: SO_0000010

position:15763:-1
position: 15763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16134:-1
position: 16134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15763-16134:-1:exon

HOP40_RS35100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35100
old locus tag: HOP40_35115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTRRRAGDTKGALSRGLLAARSAPPAAPAPEVPDEVVAEVPVAVTTPEPVRTAKQRTSKFTANLDPQLALAFDELAMAARRRLERRVDKLDVLKALIMLAADDASLRDQVINEIENSGGGRR
SIO_010081: HOP40_RS35100
subclass of: SO_0000673
so part of: HOP40_RS35100
location: complement(15763..16134)
location: region:15763-16134:-1
so has part: feature:15763-16134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15763-16134:-1:exon

HOP40_RS35105
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35105
old locus tag: HOP40_35120
so part of: sequence
location: complement(16131..16751)
location: region:16131-16751:-1
so has part: feature:16131-16751:-1:exon
subclass of: SO_0000010

position:16131:-1
position: 16131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16751:-1
position: 16751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16131-16751:-1:exon

HOP40_RS35105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35105
old locus tag: HOP40_35120
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIKMKICVGNLKGGVGKTTTAVHLALGLSRSGRTLLVDADPEQPQCYEWSETAGEDWPAAQCIVLHLPTRDLAKKAGPMLADYEHIVFDVGPKNPSLLRQALMLSDDLIIPVRPSTAELHEVPKTVELAAEVDELHPLRATVLLVQVRSGTRTAAEARGLLDELGVPVFETEIRLLERYGLSFGSVPPELGDYERVLTELTQEVTA
SIO_010081: HOP40_RS35105
subclass of: SO_0000673
so part of: HOP40_RS35105
location: complement(16131..16751)
location: region:16131-16751:-1
so has part: feature:16131-16751:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16131-16751:-1:exon

HOP40_RS35110
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35110
old locus tag: HOP40_35125
so part of: sequence
location: complement(16877..17251)
location: region:16877-17251:-1
so has part: feature:16877-17251:-1:exon
subclass of: SO_0000010

position:16877:-1
position: 16877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17251:-1
position: 17251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16877-17251:-1:exon

HOP40_RS35110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35110
old locus tag: HOP40_35125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010237011.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYDVTIQKLIDAGWYPTDGQPSVAAALDMFAQQASDGAHLPDDAPAIWYALCQELRWLADYHERNLVRHLKYDRGLTWEQVAGAVDAGLSSRQAAQARWSRLISPDRGKPAGTAAGGKTRPRQ
SIO_010081: HOP40_RS35110
subclass of: SO_0000673
so part of: HOP40_RS35110
location: complement(16877..17251)
location: region:16877-17251:-1
so has part: feature:16877-17251:-1:exon

WP_172170102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16877-17251:-1:exon

HOP40_RS35115
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35115
old locus tag: HOP40_35130
so part of: sequence
location: 17962..18177
location: region:17962-18177:1
so has part: feature:17962-18177:1:exon
subclass of: SO_0000010

position:17962:1
position: 17962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18177:1
position: 18177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17962-18177:1:exon

HOP40_RS35115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35115
old locus tag: HOP40_35130
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAYELTVPGEANHGLIRHLMVLVTSMMRYLAPSLYCRSWAPWCRIIITVVVIVVLVAGVQLLGQLLPVYTM
SIO_010081: HOP40_RS35115
subclass of: SO_0000673
so part of: HOP40_RS35115
location: 17962..18177
location: region:17962-18177:1
so has part: feature:17962-18177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17962-18177:1:exon

HOP40_RS35120
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35120
old locus tag: HOP40_35135
so part of: sequence
location: complement(18265..18657)
location: region:18265-18657:-1
so has part: feature:18265-18657:-1:exon
subclass of: SO_0000010

position:18265:-1
position: 18265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18657:-1
position: 18657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18265-18657:-1:exon

HOP40_RS35120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35120
old locus tag: HOP40_35135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTIVNAHLSAPKNEKLKIVEVNAKCQINLSHFEGVEVGQRVKYRVRCWITGDDSSDKLLYLGVWEIKSPGSHALSYARSVGLDGVLDHDSGDDEITARFEVELVSLYGLYPGGVTVATANSNKISNIHY
SIO_010081: HOP40_RS35120
subclass of: SO_0000673
so part of: HOP40_RS35120
location: complement(18265..18657)
location: region:18265-18657:-1
so has part: feature:18265-18657:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18265-18657:-1:exon

HOP40_RS35125
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35125
old locus tag: HOP40_35140
so part of: sequence
location: 18855..19529
location: region:18855-19529:1
so has part: feature:18855-19529:1:exon
subclass of: SO_0000010

position:18855:1
position: 18855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19529:1
position: 19529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18855-19529:1:exon

HOP40_RS35125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35125
old locus tag: HOP40_35140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKLAMPDLPEGRLKELMRALHELHARAGWPSTREIAHSQDFSYTTVHQLFTKTNQLPKLPVLLAIVSNLASISDPNREEQILDKFDALWCAAAATPPAGTEPTWSKDRLDLAHYFLEYNGDLVLPVLGTQEKVVLSMLLDSYSLNQINAEMWAGPKSLRIVYPINSEYATRLFEKLCMNFGARTHPEARPRFRGRVYNPNANMQYLRRTRFNVLHLESVIADV
SIO_010081: HOP40_RS35125
subclass of: SO_0000673
so part of: HOP40_RS35125
location: 18855..19529
location: region:18855-19529:1
so has part: feature:18855-19529:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18855-19529:1:exon

HOP40_RS35130
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35130
old locus tag: HOP40_35145
so part of: sequence
location: 20182..20724
location: region:20182-20724:1
so has part: feature:20182-20724:1:exon
subclass of: SO_0000010

position:20182:1
position: 20182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20724:1
position: 20724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20182-20724:1:exon

HOP40_RS35130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35130
old locus tag: HOP40_35145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAERVTVSFEPAIAQRVRQCGSRVRGGQSGYLARLVQQDAVREAGEALALWYAEQGGGAVRRRRADRSRGRAGPGFVTPRRGEIRQYVPVLPRPGQSLLRVIISADGLNQASLPVVLGLQVVERDPGSILAVRLGSLGWAVVTTVEAVLKSRLGKVAGMATAEEQEALNQALKAALDLD
SIO_010081: HOP40_RS35130
subclass of: SO_0000673
so part of: HOP40_RS35130
location: 20182..20724
location: region:20182-20724:1
so has part: feature:20182-20724:1:exon

WP_172170105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20182-20724:1:exon

HOP40_RS36560
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS36560
so part of: sequence
location: 21094..21222
location: region:21094-21222:1
so has part: feature:21094-21222:1:exon
subclass of: SO_0000010

position:21094:1
position: 21094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21222:1
position: 21222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21094-21222:1:exon

HOP40_RS36560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS36560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKHHDKQDGPPWGPARLVLALMAVVVQIFDWLDDHDWWLWW
SIO_010081: HOP40_RS36560
subclass of: SO_0000673
so part of: HOP40_RS36560
location: 21094..21222
location: region:21094-21222:1
so has part: feature:21094-21222:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21094-21222:1:exon

HOP40_RS35135
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35135
old locus tag: HOP40_35150
so part of: sequence
location: complement(21486..22841)
location: region:21486-22841:-1
so has part: feature:21486-22841:-1:exon
subclass of: SO_0000010

position:21486:-1
position: 21486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22841:-1
position: 22841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21486-22841:-1:exon

HOP40_RS35135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35135
old locus tag: HOP40_35150
inference: COORDINATES: protein motif:HMM:NF013603.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MAESLQPHLDAPANRRARRFRARIEVAHERKVGHDGDGGRRREPRRPAEPLGRSANKSSPPHSTPEERRERKHAKRRERHSLRYRLRQVTTLKRVKDCGHVSINGEGSGPALRLGVGKGGRIAGFSGLAHCGSVWACPVCSAKIATRRAEELADLMRYALEQGCTASMVTLTMRHNQRQSLADCWEALSKAWARVTSGKQWVSDQATAGLQGWVKAVEVTRGKNGWHVHLHVLMIWRGEISEDMAKHVGGRMHARWTRALQRRGFDSWRDSGGLDVRLATLDPVKGGGLHEYFVKLSHEITGGQAKLARGGGRTPFQLLTEGLATGLADDIERWWEWEKASRGRRQIAWSKGLREWAKVEPEQSDEEIVEEELPGEELLLIRPDSWRALRSHPDRVCELLEAAEAGGFAGAAALLDDWGLAWMVGRSAPPPLTKVQLDAYRAFPRQLEPTA
SIO_010081: HOP40_RS35135
subclass of: SO_0000673
so part of: HOP40_RS35135
location: complement(21486..22841)
location: region:21486-22841:-1
so has part: feature:21486-22841:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21486-22841:-1:exon

HOP40_RS35140
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35140
old locus tag: HOP40_35155
so part of: sequence
location: complement(23699..23875)
location: region:23699-23875:-1
so has part: feature:23699-23875:-1:exon
subclass of: SO_0000010

position:23699:-1
position: 23699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23875:-1
position: 23875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23699-23875:-1:exon

HOP40_RS35140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35140
old locus tag: HOP40_35155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRGLLGRLLMFLLLLLFAAWVLRTVHDWVVPALPSLGVFVGLVLVLVLLVHLRRRRRA
SIO_010081: HOP40_RS35140
subclass of: SO_0000673
so part of: HOP40_RS35140
location: complement(23699..23875)
location: region:23699-23875:-1
so has part: feature:23699-23875:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23699-23875:-1:exon

HOP40_RS35145
type: Gene
subclass of: SO_0000704
RO_0002162: 2736640
locus tag: HOP40_RS35145
old locus tag: HOP40_35160
so part of: sequence
location: complement(23875..24189)
location: region:23875-24189:-1
so has part: feature:23875-24189:-1:exon
subclass of: SO_0000010

position:24189:-1
position: 24189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23875-24189:-1:exon

HOP40_RS35145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2736640
locus tag: HOP40_RS35145
old locus tag: HOP40_35160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVLVVVGLVFAFMAGAGVGAAFVLNDLRPETVVERTERRVGEVITQMQAVHDAAMQELVRLPEERGDLPEDVDSDAGRSRTPVRGPNIMRLPESYYSWNRVAG
SIO_010081: HOP40_RS35145
subclass of: SO_0000673
so part of: HOP40_RS35145
location: complement(23875..24189)
location: region:23875-24189:-1
so has part: feature:23875-24189:-1:exon

WP_172170108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23875-24189:-1:exon