Pseudonocardia broussonetiae strain Gen 01 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.
Submitted (15-MAY-2020) College of Life Science and Technology, Central South University of Forestry and Technology, No. 498, Shaoshan South Road, Changsha, Hunan 410004, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP053565.1.\nBacteria and source DNA available from Mo.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 03:53:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,087\nCDSs (total) :: 7,032\nGenes (coding) :: 6,950\nCDSs (with protein) :: 6,950\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 21 of 82\nPseudo Genes (incomplete) :: 57 of 82\nPseudo Genes (internal stop) :: 8 of 82\nPseudo Genes (multiple problems) :: 4 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudonocardia broussonetiae
COORDINATES: similar to AA sequence:RefSeq:WP_020500957.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_020389663.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017568655.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF015438.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013731145.1
COORDINATES: similar to AA sequence:RefSeq:WP_018216107.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF037527.2
COORDINATES: protein motif:HMM:NF025217.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015317.2
COORDINATES: similar to AA sequence:RefSeq:WP_015437277.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013798784.1
COORDINATES: protein motif:HMM:NF003220.0
COORDINATES: protein motif:HMM:NF014092.2
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005155815.1
COORDINATES: similar to AA sequence:RefSeq:WP_009482691.1
COORDINATES: protein motif:HMM:NF020496.2
COORDINATES: protein motif:HMM:NF028169.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF022589.2
COORDINATES: protein motif:HMM:NF037679.2
COORDINATES: similar to AA sequence:RefSeq:WP_005628491.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_020729182.1
COORDINATES: protein motif:HMM:NF040183.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF039700.1
COORDINATES: similar to AA sequence:RefSeq:WP_010145670.1
COORDINATES: protein motif:HMM:NF014713.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_014805446.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013772793.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020500958.1
GO:0018942 - organometal metabolic process [Evidence IEA]