Thiothrix subterranea strain Ku-5 plasmid pTSUKu5_27_unt8, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
Complete genome and methylome analysis of filamentous colorless sulfur bacteria Thiothrix subterranea sp. nov. Ku-5
Submitted (14-MAY-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP053484.1.\nBacteria and source DNA available from Margarita Grabovich.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-FEB-2020\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Thiotrix_Q5_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 174.63x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/24/2022 02:04:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,040\nCDSs (total) :: 3,978\nGenes (coding) :: 3,922\nCDSs (with protein) :: 3,922\nGenes (RNA) :: 62\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 12 of 56\nPseudo Genes (incomplete) :: 44 of 56\nPseudo Genes (internal stop) :: 2 of 56\nPseudo Genes (multiple problems) :: 2 of 56\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
underground horizons of a flooded mine in Russia
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020308060.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003159119.1
COORDINATES: protein motif:HMM:NF017386.2
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: protein motif:HMM:NF019844.2
COORDINATES: similar to AA sequence:RefSeq:WP_004629956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011074453.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077911.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025001.2