Candidatus Absconditicoccus praedator strain M39-6 chromosome, complete genome.
Bacteria; Candidatus Absconditabacteria; Candidatus Absconditabacterales; Candidatus Absconditicoccaceae; Candidatus Absconditicoccus.
Cultivation of a vampire: 'Candidatus Absconditicoccus praedator'
Submitted (28-MAY-2020) Depratment of Extremophiles Biology, Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya Oktyabrya, Moscow, Moscow 117312, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP054059.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/16/2023 02:16:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,076\nCDSs (total) :: 1,034\nGenes (coding) :: 1,031\nCDSs (with protein) :: 1,031\nGenes (RNA) :: 42\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 2\nPseudo Genes (total) :: 3\nCDSs (without protein) :: 3\nPseudo Genes (ambiguous residues) :: 0 of 3\nPseudo Genes (frameshifted) :: 0 of 3\nPseudo Genes (incomplete) :: 3 of 3\nPseudo Genes (internal stop) :: 0 of 3\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
enrichment culture from haloalkaline lake
Russia: Moscow, Lake Hotontyn Nur, Mongolia
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF014453.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
adenylate/guanylate cyclase domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF016858.2
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DNA-directed RNA polymerase subunit beta'
COORDINATES: protein motif:HMM:NF021871.2
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008650850.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013085.2
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012538.2
COORDINATES: similar to AA sequence:RefSeq:WP_002356427.1
COORDINATES: protein motif:HMM:NF012679.2
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00557
ribosomal protein L10 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012922.2
COORDINATES: protein motif:HMM:NF012652.2
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF013348.2
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017321.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: protein motif:HMM:NF012305.2
COORDINATES: protein motif:HMM:NF013316.2
COORDINATES: protein motif:HMM:NF013260.2
YifB family Mg chelatase-like AAA ATPase
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012451.2
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF022779.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF017043.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF012472.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
GO:0030410 - nicotianamine synthase activity [Evidence IEA]
GO:0030418 - nicotianamine biosynthetic process [Evidence IEA]
GO:0016436 - rRNA (uridine) methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF027449.2
hydroxyacylglutathione hydrolase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020260.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021127.2
COORDINATES: protein motif:HMM:NF012731.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF019850.2
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00449.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF014442.2
TaqI-like C-terminal specificity domain-containing protein
COORDINATES: protein motif:HMM:NF019344.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020048.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558081.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012796.2
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00965.1
GO:0008666 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF012920.2
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF014041.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF036799.2
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
GO:0016755 - aminoacyltransferase activity [Evidence IEA]
GO:0044038 - cell wall macromolecule biosynthetic process [Evidence IEA]
peptidoglycan bridge formation glycyltransferase FemA/FemB family protein
COORDINATES: protein motif:HMM:NF013279.2
GO:0051301 - cell division [Evidence IEA]
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:NF013584.2
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:NF014573.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01068.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015077.2
COORDINATES: protein motif:HMM:NF037260.2
type V CRISPR-associated protein Cas12a/Cpf1
COORDINATES: protein motif:HMM:NF013984.2
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015347.2
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:NF020118.2
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014930.2
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
methyltransferase domain-containing protein
rRNA adenine N-6-methyltransferase family protein
COORDINATES: protein motif:HMM:NF014678.2
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:NF003211.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021462.2
COORDINATES: protein motif:HMM:NF012382.2
pyridoxal phosphate-dependent aminotransferase
crossover junction endodeoxyribonuclease RuvC
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF021033.2
COORDINATES: protein motif:HMM:NF037100.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF020360.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
HI0074 family nucleotidyltransferase substrate-binding subunit
COORDINATES: protein motif:HMM:NF016963.2
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: protein motif:HMM:NF021240.2
type I-B CRISPR-associated protein Cas5b
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014040.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:NF021356.2
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: similar to AA sequence:RefSeq:WP_002446444.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012832.2
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF019346.2
COORDINATES: protein motif:HMM:NF012239.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF012772.2
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024487.2
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF013068.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF040120.1
COORDINATES: protein motif:HMM:NF019607.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: protein motif:HMM:NF024984.2
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291004.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01444.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012673.2
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: protein motif:HMM:NF025157.2
Fic/DOC family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF015666.2
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF018009.2
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012745.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF012564.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015539819.1
COORDINATES: protein motif:HMM:NF015664.2
located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013057.2
COORDINATES: similar to AA sequence:RefSeq:WP_008372550.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF012627.2
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028446.2
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016184196.1
COORDINATES: protein motif:HMM:NF013027.2
COORDINATES: similar to AA sequence:RefSeq:WP_004934537.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012462.2
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
COORDINATES: similar to AA sequence:RefSeq:WP_010734468.1
COORDINATES: protein motif:HMM:NF012498.2
COORDINATES: protein motif:HMM:NF012782.2
COORDINATES: protein motif:HMM:TIGR01049.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008426562.1
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: protein motif:HMM:NF019307.2
COORDINATES: protein motif:HMM:NF014416.2
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF013216.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_011702823.1
COORDINATES: similar to AA sequence:RefSeq:WP_016328532.1
COORDINATES: protein motif:HMM:NF014816.2
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016290306.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF012991.2
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:TIGR00029.2
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:NF021981.2
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_016292435.1
COORDINATES: protein motif:HMM:TIGR02937.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF012951.2
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013213.2
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF012624.2
COORDINATES: protein motif:HMM:NF012598.2
COORDINATES: protein motif:HMM:NF012781.2
COORDINATES: protein motif:HMM:NF013369.2
COORDINATES: protein motif:HMM:NF015102.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013633.2
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012633.2
COORDINATES: similar to AA sequence:RefSeq:WP_003720928.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013025.2
COORDINATES: similar to AA sequence:RefSeq:WP_008811487.1
COORDINATES: protein motif:HMM:NF017049.2
COORDINATES: protein motif:HMM:NF013530.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013565.2
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013921.2
COORDINATES: protein motif:HMM:NF012613.2
COORDINATES: protein motif:HMM:NF015714.2
polysaccharide pyruvyl transferase family protein
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012616.2
rRNA adenine dimethyltransferase family protein
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF013939.2
double zinc ribbon domain-containing protein
GO:0016758 - hexosyltransferase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014872.2
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012361.2
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014332.2
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020733.2
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF013069.2
HlyD family efflux transporter periplasmic adaptor subunit
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014592.2
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
GGDEF domain-containing phosphodiesterase
COORDINATES: protein motif:HMM:TIGR00149.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF012280.2
Kazal-type serine protease inhibitor domain-containing protein
COORDINATES: protein motif:HMM:NF014316.2
COORDINATES: protein motif:HMM:NF013222.2
COORDINATES: protein motif:HMM:NF012904.2
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019235960.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001750.0
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558087.1
COORDINATES: protein motif:HMM:NF016158.2
COORDINATES: protein motif:HMM:NF013347.2
COORDINATES: protein motif:HMM:NF024423.2
COORDINATES: protein motif:HMM:NF036772.2
COORDINATES: protein motif:HMM:NF014868.2
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF012490.2
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF015042.2
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014621.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013854.2
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
GO:0009143 - nucleoside triphosphate catabolic process [Evidence IEA]
non-canonical purine NTP pyrophosphatase
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
ribonuclease H-like domain-containing protein
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF013494.2
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:NF013804.2
COORDINATES: protein motif:HMM:NF013122.2
iron-sulfur cluster assembly scaffold protein
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SufD family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF012456.2
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF014299.2
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023495.2
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF019880.2
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF027524.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster binding domain-containing protein
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012998.2
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
prephenate dehydratase domain-containing protein
COORDINATES: protein motif:HMM:NF019156.2
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015451.2
aminoacetone oxidase family FAD-binding enzyme
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF024319.2
COORDINATES: protein motif:HMM:NF012965.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
patatin-like phospholipase family protein
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF013449.2
COORDINATES: protein motif:HMM:NF013401.2
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: protein motif:HMM:NF014042.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013856.2
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
GO:0140110 - transcription regulator activity [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012722.2
HAMP domain-containing sensor histidine kinase
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013468.2
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021612.2
Holliday junction resolvase-like protein
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF020892.2
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016432.2
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF028500.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
type II secretion system F family protein
GO:0006282 - regulation of DNA repair [Evidence IEA]
NOL1/NOP2/sun family putative RNA methylase
COORDINATES: similar to AA sequence:RefSeq:WP_002869062.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: protein motif:HMM:NF012381.2
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF013312.2
COORDINATES: protein motif:HMM:NF024819.2
COORDINATES: protein motif:HMM:NF013106.2
transglycosylase domain-containing protein
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013492.2
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013891.2
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF037626.2
COORDINATES: protein motif:HMM:NF014874.2
COORDINATES: protein motif:HMM:NF014716.2
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_005229047.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002793551.1
COORDINATES: protein motif:HMM:NF015755.2
COORDINATES: protein motif:HMM:NF013324.2
TetR/AcrR family transcriptional regulator
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF013919.2
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_003040341.1
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:NF024054.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012379.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
MiaB/RimO family radical SAM methylthiotransferase
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014533.2
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016181840.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012967.2
COORDINATES: similar to AA sequence:RefSeq:WP_002379278.1
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:NF013727.2
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016290650.1
COORDINATES: protein motif:HMM:NF014426.2
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF013079.2
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF022112.2
COORDINATES: protein motif:HMM:NF012952.2
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014232.2
COORDINATES: protein motif:HMM:NF013660.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF013614.2
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012304.2
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
PrsW family glutamic-type intramembrane protease
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: protein motif:HMM:NF012242.2
COORDINATES: protein motif:HMM:NF013545.2
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013414.2
COORDINATES: protein motif:HMM:NF012404.2
COORDINATES: similar to AA sequence:RefSeq:WP_002508566.1
COORDINATES: protein motif:HMM:NF014656.2
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:TIGR03592.1
YidC/Oxa1 family membrane protein insertase
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291002.1
COORDINATES: protein motif:HMM:NF012554.2
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016488.2
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
COORDINATES: protein motif:HMM:NF012350.2
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF012621.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF012492.2
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
gamma-glutamylcyclotransferase family protein
type IV secretory system conjugative DNA transfer family protein
sigma-70 family RNA polymerase sigma factor
GO:0008276 - protein methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: protein motif:HMM:NF014417.2
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:NF012519.2
COORDINATES: protein motif:HMM:NF014711.2
trypsin-like peptidase domain-containing protein
fibrobacter succinogenes major paralogous domain-containing protein
COORDINATES: protein motif:HMM:NF015728.2
RAMP superfamily CRISPR-associated protein
COORDINATES: protein motif:HMM:NF037066.2
type III-A CRISPR-associated protein Cas10/Csm1
type III-A CRISPR-associated protein Csm2
type III-A CRISPR-associated RAMP protein Csm3
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: protein motif:HMM:NF013012.2
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012788.2
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: protein motif:HMM:NF024108.2
COORDINATES: protein motif:HMM:NF013915.2
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_263577173.1
GO:0005509 - calcium ion binding [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
thrombospondin type 3 repeat-containing protein
His-Xaa-Ser system radical SAM maturase HxsB
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012369.2
COORDINATES: protein motif:HMM:NF024911.2
COORDINATES: protein motif:HMM:TIGR00575.1
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF036968.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF012301.2
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:NF025755.2
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012299.2
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018649.2
COORDINATES: protein motif:HMM:NF012308.2
COORDINATES: protein motif:HMM:NF036531.2
GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024057.2
COORDINATES: protein motif:HMM:NF021375.2
COORDINATES: protein motif:HMM:NF013999.2
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF013368.2
COORDINATES: similar to AA sequence:RefSeq:WP_004201172.1
COORDINATES: similar to AA sequence:RefSeq:WP_020055846.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF020052.2
COORDINATES: protein motif:HMM:NF024671.2
COORDINATES: protein motif:HMM:NF022812.2
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018003165.1
COORDINATES: protein motif:HMM:NF020928.2
Tex-like N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF013845.2
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_016291634.1
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: protein motif:HMM:NF015414.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013570.2
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002293105.1
COORDINATES: protein motif:HMM:NF015552.2
COORDINATES: protein motif:HMM:NF013045.2
COORDINATES: similar to AA sequence:RefSeq:WP_011026705.1
COORDINATES: protein motif:HMM:NF014119.2
COORDINATES: protein motif:HMM:NF015531.2
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:NF012529.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:NF015427.2
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF012488.2
COORDINATES: protein motif:HMM:NF026064.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF017508.2
GO:0006457 - protein folding [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013593.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
helix-turn-helix domain-containing protein
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:NF015736.2
COORDINATES: similar to AA sequence:RefSeq:WP_002387688.1
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: protein motif:HMM:NF013424.2
COORDINATES: protein motif:HMM:NF012915.2
COORDINATES: protein motif:HMM:NF014541.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013568.2
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF019192.2
COORDINATES: protein motif:HMM:NF014759.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
5'-3' exonuclease H3TH domain-containing protein
COORDINATES: protein motif:HMM:NF014923.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024642.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:NF020419.2