Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica
Submitted (22-OCT-2014) Bioscience, Los Alamos National Laboratory, P.O. Box 1663, MS M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP009710.1.\nThe DNA was obtained from USAMRIID.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 16-OCT-2014\nAssembly Method :: Newbler v. 2.6; Velvet v. 1.2.08; Allpaths\n v. 44837; Phrap v. SPS - 4.24; HGAP v.\n 2.2.0\nGenome Coverage :: 465x\nSequencing Technology :: Illumina; PacBio; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 19:34:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,343\nCDSs (total) :: 4,226\nGenes (coding) :: 4,084\nCDSs (with protein) :: 4,084\nGenes (RNA) :: 117\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 11\nPseudo Genes (total) :: 142\nCDSs (without protein) :: 142\nPseudo Genes (ambiguous residues) :: 0 of 142\nPseudo Genes (frameshifted) :: 51 of 142\nPseudo Genes (incomplete) :: 113 of 142\nPseudo Genes (internal stop) :: 26 of 142\nPseudo Genes (multiple problems) :: 38 of 142\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000909111.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family replication-relaxation protein
IPR005738 Bacterial DNA topoisomerase III
COORDINATES: similar to AA sequence:RefSeq:WP_020313368.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017346487.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154883.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577992.1
COORDINATES: similar to AA sequence:RefSeq:WP_000190069.1
COORDINATES: similar to AA sequence:RefSeq:WP_008815930.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004178178.1
IPR004346 IPR007792 Type IV secretory pathway
COORDINATES: similar to AA sequence:RefSeq:WP_001096399.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_000819778.1
COORDINATES: similar to AA sequence:RefSeq:WP_009114639.1
YoeB-YefM toxin-antitoxin system antitoxin YefM
COORDINATES: similar to AA sequence:RefSeq:NP_707909.1
COORDINATES: similar to AA sequence:RefSeq:WP_009113430.1
IPR007688 TriE/TrbL/VirB6 plasmid conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_001677777.1
COORDINATES: similar to AA sequence:RefSeq:WP_010286993.1
IPR004357 Type IV secretion system TriH/CagX conjugation protein
COORDINATES: similar to AA sequence:RefSeq:WP_001045307.1
P-type conjugative transfer protein VirB9
IPR005498 Bacterial conjugation TrbI-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_019844806.1
VirB10/TraB/TrbI family type IV secretion system protein
IPR001482 Bacterial type II secretion system protein E
COORDINATES: similar to AA sequence:RefSeq:WP_002668618.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024517.2
cag pathogenicity island Cag12 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000754361.1
COORDINATES: protein motif:HMM:NF015831.2
COORDINATES: similar to AA sequence:RefSeq:WP_020313369.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_004175309.1
type IV secretory system conjugative DNA transfer family protein