Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence.
type: Entry
definition: Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence.
sequence version: NZ_CP012423.1
sequence date: 2022-12-13
sequence: sequence
division: CON
label: NZ_CP012423.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03269975
keyword: RefSeq
source: Spiroplasma kunkelii CR2-3x
organism: Spiroplasma kunkelii CR2-3x
taxonomy: Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
reference: 1
references: 26494665
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP012423.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: SMRT Assembler v. 2.3\nSequencing Technology :: PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 23:04:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,961\nCDSs (total) :: 1,922\nGenes (coding) :: 1,836\nCDSs (with protein) :: 1,836\nGenes (RNA) :: 39\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 33\nncRNAs :: 3\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 41 of 86\nPseudo Genes (incomplete) :: 55 of 86\nPseudo Genes (internal stop) :: 46 of 86\nPseudo Genes (multiple problems) :: 45 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22558
topology: circular
so has quality: SO_0000988
location: 1..22558
location: region:1-22558:1
RO_0002162: 273035

NZ_CP012423
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03269975
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L
author: Davis, R.E.
author: Shao, J.
author: Dally, E.L.
author: Zhao, Y.
author: Gasparich, G.E.
author: Gaynor, B.J.
author: Athey, J.C.
author: Harrison, N.A.
author: Donofrio, N.
journal: Genome Announc 3 (5), e01216-15 (2015)
pubmed: 26494665
comments: Publication Status: Online-Only

26494665
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Davis, R.E.
author: Shao, J.Y.
author: Dally, E.L.
author: Zhao, Y.
author: Gasparich, G.E.
author: Gaynor, B.J.
author: Athey, J.C.
author: Harrison, N.A.
author: Donofrio, N.
journal: Submitted (20-AUG-2015) USDA, United States Department of Agriculture, Molecular Plant Pathology Laboratory, 10300 Baltimore Ave., Beltsville, MD 20705, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22558:1
position: 22558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22558:1:source
so part of: sequence
organism: Spiroplasma kunkelii CR2-3x
mol type: genomic DNA
strain: CR2-3x
host: Zea mays L.
plasmid: pSKU226
country: Costa Rica
collection date: 2004

273035
type: Taxonomy
SIO_000068: taxonomy

SKUN_RS07885
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07885
old locus tag: SKUN_001717
so part of: sequence
location: join(22391..22558,1..156)
location: region:1-22558:1
so has part: feature:22391-22558:1:exon
so has part: feature:1-156:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:22391-22558:1:exon

position:22391:1
position: 22391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-156:1:exon

position:156:1
position: 156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SKUN_RS07885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07885
old locus tag: SKUN_001717
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKLDENICIAPHCEKITLLVMPAISICSEHEKQFMEYIDNLPFIPELNEILETDKKAHFQFILANLTNFFEKLEKEWNRKNKYNIKKKKPKKKRTEKEANRKIKQRK
SIO_010081: SKUN_RS07885
subclass of: SO_0000673
so part of: SKUN_RS07885
location: join(22391..22558,1..156)
location: region:1-22558:1
so has part: feature:22391-22558:1:exon
so has part: feature:1-156:1:exon

WP_053391602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22391-22558:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-156:1:exon

SKUN_RS07895
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07895
old locus tag: SKUN_001718
so part of: sequence
location: 618..2423
location: region:618-2423:1
so has part: feature:618-2423:1:exon
subclass of: SO_0000010

position:618:1
position: 618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2423:1
position: 2423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618-2423:1:exon

SKUN_RS07895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07895
old locus tag: SKUN_001718
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKLLSILTITTLTTSIPAPLLAAVPLTNTLTSNSNNEYLSIKEMNGATGITISSQICFAIDNSNTIYFNTDNGIYKLTAGSTTATKINDINDYVRSIDIDSDNNIYFGTNNGAFVLKQGSTTSTKINGISGNVLSIAVDSKDNIYFGTNNGAFVLKQGETTPTKINDINYYVRSIDIDSDNNIYFGTNNGAFVLKQGETTPTKINDINDYVYSIAVDSKDNIYFRTNNGAFVLKQGSTTSTKINGISGNVVSIAVDSKDNIYFGTNNGAFVLKQGSTTSTKINGINDYVLSIAVDSKDNIYFGTDDGIYVLQTALSWLKTQSQFNLVDSTKTQTWTRSDLLSVDGELNIDIVNPNIDKVVFDNVQQGQTSKQWKINVKPETTPRDHNLQVFFTLEGKQYKSEIIVSMQAKINPPTTSKQENLSNVIKFGDDNNLGNIIDNNDNTIEAKIQQLNSRIVDFSQIEITNKDNNKATLTAKPDSKSYIGSVDITYNVVPTTIVDLKIDVIPTSSQATVVKDYLGQIDTSKMTNPVNTFYYTSSESTIKLLKPTSSSVITGIVYGCDEHWNKTSQSNTIDPINGNKTWWVAVSNKGRQIYSWIVW
SIO_010081: SKUN_RS07895
subclass of: SO_0000673
so part of: SKUN_RS07895
location: 618..2423
location: region:618-2423:1
so has part: feature:618-2423:1:exon

WP_144416799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:618-2423:1:exon

SKUN_RS07900
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07900
so part of: sequence
location: 2353..3051
location: region:2353-3051:1
so has part: feature:2353-3051:1:exon
subclass of: SO_0000010

position:2353:1
position: 2353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3051:1
position: 3051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2353-3051:1:exon

SKUN_RS07900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGIKLDGSQLATKDGKYIVELSDNLGYTNNVYLQITSKQTISNYFDINNGKQFEQWAEASGYDNIRGYSAIQLNNLFKKSKNWQQLASDSQFATAVAEWFKTNGKLLSTESLTKEKVVEQLKTQIPSDIKIDKVNTNNYDVNKVEFDLNESEFKPNDKGNITVKYGTATSEQFSLQIKNSSSTYNNKGGDSKLWIIGLVVGVLAGLALFGWLFKRFVFDKYFLPKIKKPPPS
SIO_010081: SKUN_RS07900
subclass of: SO_0000673
so part of: SKUN_RS07900
location: 2353..3051
location: region:2353-3051:1
so has part: feature:2353-3051:1:exon

WP_144416800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2353-3051:1:exon

SKUN_RS07905
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07905
old locus tag: SKUN_001719
so part of: sequence
location: 3121..3390
location: region:3121-3390:1
so has part: feature:3121-3390:1:exon
subclass of: SO_0000010

position:3121:1
position: 3121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3390:1
position: 3390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3121-3390:1:exon

SKUN_RS07905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07905
old locus tag: SKUN_001719
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMTLLATSGVNDLLNKILGIALPILIAVAVVSAIIMIGVYAIGGKFNADSSNRKETIKKVMWVLICLLVVILASAIVLSFKDTIAPITS
SIO_010081: SKUN_RS07905
subclass of: SO_0000673
so part of: SKUN_RS07905
location: 3121..3390
location: region:3121-3390:1
so has part: feature:3121-3390:1:exon

WP_011225093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3121-3390:1:exon

SKUN_RS07910
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07910
old locus tag: SKUN_001720
so part of: sequence
location: 3402..4964
location: region:3402-4964:1
so has part: feature:3402-4964:1:exon
subclass of: SO_0000010

position:3402:1
position: 3402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4964:1
position: 4964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3402-4964:1:exon

SKUN_RS07910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07910
old locus tag: SKUN_001720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLLQKRKQDNLTIVKSKKPILKQGLEQFIAYYFKRIFTILAIAMTPLLIIGCIVIAILSVILWFLPNTETSNNIQTFFSNTLSVETVETTGGSNIMGDIIGWAINSFCAILYLIFIKPIVWLLGGMQDVVYFIGGGALGEQLFSMNNISTIYWLLFGIAMAMFLVIIGTKAIAWMYNNRRHEMKSAITNILIIIIAIPLIPTLFIMANTIMTMIVKLFLQNAPIDTNNIALAIFNSSFMSGVHQFHYIPVSWTFDDSGNFSYIICLVSECFMVYIMFTVCLFLFWRVIELFILLCYSPVVVVMSVADQGHQFRNWKDMVMGRFISYAFMFITYNIFIMSIAVLGQVAILIPNSLSQPIFILLGIFAFGFAVAKSPQIITSLIGGNTAMSDSIGNLMSFGMATNLAKIGGKFAWKSGKFAARNAVGKPLGLTQGISGAMKSGTPFKEATVGTLFGGFNPNTGGVAGAVVGQAIKTKDKVMTNISDYQKFKEQHQQKLNKDSVLKQENINKKKDKGDKNNGK
SIO_010081: SKUN_RS07910
subclass of: SO_0000673
so part of: SKUN_RS07910
location: 3402..4964
location: region:3402-4964:1
so has part: feature:3402-4964:1:exon

WP_053391587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3402-4964:1:exon

SKUN_RS07915
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07915
so part of: sequence
location: 4954..5325
location: region:4954-5325:1
so has part: feature:4954-5325:1:exon
subclass of: SO_0000010

position:4954:1
position: 4954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5325:1
position: 5325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4954-5325:1:exon

SKUN_RS07915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07915
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENNSKIITKKASRVRFTVSNALGGIGWPELFIIFVAVVLITCSLTLLAKLSLLAGVITTVIVAIFTIFLISPNKNGEKLYYMIFIAFGFLFKRKKHNIENTSNIQIINNRVVLIINKHLFIK
SIO_010081: SKUN_RS07915
subclass of: SO_0000673
so part of: SKUN_RS07915
location: 4954..5325
location: region:4954-5325:1
so has part: feature:4954-5325:1:exon

WP_053391588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4954-5325:1:exon

SKUN_RS07920
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07920
old locus tag: SKUN_001721
so part of: sequence
location: 5343..7475
location: region:5343-7475:1
so has part: feature:5343-7475:1:exon
subclass of: SO_0000010

position:5343:1
position: 5343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7475:1
position: 7475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5343-7475:1:exon

SKUN_RS07920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07920
old locus tag: SKUN_001721
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: ATP-binding protein
translation: MSTQEERNTPIYDFSNYLRALNFDFEIIKIDSKLNFDKNKNYLTQTLKQDSLKNSQTQQLNNFLSMSKYLENQDLKLEQNYYLIVFKNNNDKKLELSLLSYNQHLSLTLPTSEEIKKIVDKKIIPTNTTKSSLATLIKETSTYLKMDNNKFVSYLTVNQFPLTVNDMWLSNFSEIENVNISIRVRHLDNITAFKLLDRAIRRAQDQETKKASEDIEYSLYLQNFNELLQLIQVGGETLKMVSIIFTCFADSKKELDQVVSNLKNEMIRNRFTINDLTFRQFEIYKCLLFNNNDKLKNIEQEMAAITLASAWPFPSKPLNDPQGLIMGENEQLQPVIFDIKTKSSTRASHNAFIVGQMGFGKTFNVKKQLNWLYCNNTKIYIIDPQREYGSFANYHGGEIIEFGNNPKAKINPLEIFTDNFPEHISLLEQWFKNLYSDLTNIDLAKLQEYIIQLYKNFKITAATNLSKLTPKDYPILNDLYNLVYQKEKNTLLEKMLWKLTKGADGVLFNGVSTLEIKSDLIVFDIYNMAKSKTISNAQMYLLLALLDRVMKKNKEDNLNLPPEQQSWICIAIDEAHLLINEDNLLALNYLFTLSKTCRKFNGILYILTQSIGDFTQHGENVKRQARGIIEQCTYQFIHHLNSIGLQNYTELLTDNNMINAYEKNIILTPRKGLCLFSINDKRYILQFIATSEEIKAIGTQEDINNLGKKI
SIO_010081: SKUN_RS07920
subclass of: SO_0000673
so part of: SKUN_RS07920
location: 5343..7475
location: region:5343-7475:1
so has part: feature:5343-7475:1:exon

WP_053391589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5343-7475:1:exon

SKUN_RS07925
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07925
old locus tag: SKUN_001722
so part of: sequence
location: 7479..7817
location: region:7479-7817:1
so has part: feature:7479-7817:1:exon
subclass of: SO_0000010

position:7479:1
position: 7479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7817:1
position: 7817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7479-7817:1:exon

SKUN_RS07925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07925
old locus tag: SKUN_001722
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MEVKQNNWTTVNILARRKLKRETEKAFLFSIPKHKGLSVWISKKCIHSSRNGKMLAVGIKVDDEYTIWIYDTESKQHLKSEIWQGQILINLYQSEFKKIVAWLNKHQQSLNK
SIO_010081: SKUN_RS07925
subclass of: SO_0000673
so part of: SKUN_RS07925
location: 7479..7817
location: region:7479-7817:1
so has part: feature:7479-7817:1:exon

WP_053391590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7479-7817:1:exon

SKUN_RS07930
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07930
old locus tag: SKUN_001723
so part of: sequence
location: 8047..9432
location: region:8047-9432:1
so has part: feature:8047-9432:1:exon
subclass of: SO_0000010

position:8047:1
position: 8047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9432:1
position: 9432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8047-9432:1:exon

SKUN_RS07930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07930
old locus tag: SKUN_001723
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: type IV secretion system DNA-binding domain-containing protein
translation: MFLKYHTLDFKNFHIAYVDKYSWIISLVLFVIAFLFFLWFYVCHKIDNMDSPKIKQQKSSKASDKEFKTLQLKMLALNNKYGIPKTNLSQHTILVGTTGSGKTTTLMFLVKQLTQLFKQTTIIIDGKGDIDLINKVKQQDPNAFIWEIGGTTKYNPFGSKNSVVLSDKIMSVFDFSEPYYQNIANNYLLLLLDTLLNNNIAISFDNLVKYFPIKQLEKIIHFNNNNISLLSNFSEKDINGLYNQLSIYNKQLNASFDKDNNLLELITKHKTILFSINSLMYPKLAGSVAKIIIQDLKELTTLKPVNQKINIVLDEFNVFASETIINLINKSRSFNYQCFLSFQTINDLKTNNMNLTDTIFGNVNSIVCHNIKDPNTAEYVASVFGTQETEKLTRQLDFKNNTTNMGSVRSVDEFVVHPNDLKTLKIGECYFKTTLPSGKLFIKKIAVDPTCLDDLIQYFNE
SIO_010081: SKUN_RS07930
subclass of: SO_0000673
so part of: SKUN_RS07930
location: 8047..9432
location: region:8047-9432:1
so has part: feature:8047-9432:1:exon

WP_158500835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8047-9432:1:exon

SKUN_RS07935
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07935
old locus tag: SKUN_001724
so part of: sequence
location: 9578..9877
location: region:9578-9877:1
so has part: feature:9578-9877:1:exon
subclass of: SO_0000010

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9877:1
position: 9877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9877:1:exon

SKUN_RS07935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07935
old locus tag: SKUN_001724
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MYRNFKNNQLFLKEVDVIFADKAMFKTITDKNNIQRNLFSFWVNDDGQNIKCVTWNETADNLNKVFNKDTKTMEIKYLHKNNKNTNELEYSVREFNIIN
SIO_010081: SKUN_RS07935
subclass of: SO_0000673
so part of: SKUN_RS07935
location: 9578..9877
location: region:9578-9877:1
so has part: feature:9578-9877:1:exon

WP_053391592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9877:1:exon

SKUN_RS11520
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS11520
so part of: sequence
location: 10564..10695
location: region:10564-10695:1
so has part: feature:10564-10695:1:exon
subclass of: SO_0000010

position:10564:1
position: 10564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10695:1
position: 10695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10564-10695:1:exon

SKUN_RS11520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS11520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTTTESIKFDKLQAENETVKKELAEKDKKIKELNNHEIWNNTE
SIO_010081: SKUN_RS11520
subclass of: SO_0000673
so part of: SKUN_RS11520
location: 10564..10695
location: region:10564-10695:1
so has part: feature:10564-10695:1:exon

WP_268794901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10564-10695:1:exon

SKUN_RS07940
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07940
old locus tag: SKUN_001725
so part of: sequence
location: 10747..12609
location: region:10747-12609:1
so has part: feature:10747-12609:1:exon
subclass of: SO_0000010

position:10747:1
position: 10747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12609:1
position: 12609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10747-12609:1:exon

SKUN_RS07940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07940
old locus tag: SKUN_001725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKLFSILTISTLTTSTPVPLMAMIPPSLQELITTINIGEIEINDQEHIIARLREINHPILSRPDFLENMVVENITRTSAIIHARENIQSNEYPIPASINFTINFNLPTLSTIIRNRNLGNNISITIYGLNECEINFGDIIYELRRLNPNLSNYYQNIFDFLAIDHRQTTLRNTQLSLISAGLEFYTVFRSDDRINVNFNDYININVLNSILIDHNNLGEIPDNRPQTILQRVRELNPNININFFTIRENSITENSAIIQWNRTNSPFPLIQYQNLLTFSIRNSKTSDENDKELIKNKLEDNNCQTNNIESFLVGTESGNGSGSVDGSNALEKIKLTPTKEAILTDQKIFDKFNSLSKQQKQQKLNEINQHYQTLSQNDKKVFKDKLIVIGTSAIEAGIIAVGTKITVGGSASSAAVSTGEAVELTPLLSEGLTAAETLSVVEGTTAVVTEGAVIGAEAGTAAALAPETLGLSLVIGGLAITGTAIIWWLNNHENNSQAVKHELHNQYNEIEKYYKFLAHDQLKLDINSNEWNKIKQIYQENSNNYQEFKNKIKLEITNFHKENHSGWGGSITDDDINTLIKIIYNHFQEINNHFSSCGNNQGWKIVTNTIGNYFKIEQE
SIO_010081: SKUN_RS07940
subclass of: SO_0000673
so part of: SKUN_RS07940
location: 10747..12609
location: region:10747-12609:1
so has part: feature:10747-12609:1:exon

WP_053391593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10747-12609:1:exon

SKUN_RS07945
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07945
old locus tag: SKUN_001726
so part of: sequence
location: 12850..13131
location: region:12850-13131:1
so has part: feature:12850-13131:1:exon
subclass of: SO_0000010

position:12850:1
position: 12850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13131:1
position: 13131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12850-13131:1:exon

SKUN_RS07945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07945
old locus tag: SKUN_001726
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKYIKLWNMLDTEYWVLLNNNSKKAKTWDNMRNIIDEIMDTFNNPNFWDKDTINHWLAFLDVDLQKCLNCSFTIQKVDDEWFTINTGDKNCGE
SIO_010081: SKUN_RS07945
subclass of: SO_0000673
so part of: SKUN_RS07945
location: 12850..13131
location: region:12850-13131:1
so has part: feature:12850-13131:1:exon

WP_053391594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12850-13131:1:exon

SKUN_RS07950
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07950
old locus tag: SKUN_001727
so part of: sequence
location: 13420..13770
location: region:13420-13770:1
so has part: feature:13420-13770:1:exon
subclass of: SO_0000010

position:13420:1
position: 13420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13770:1
position: 13770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13420-13770:1:exon

SKUN_RS07950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07950
old locus tag: SKUN_001727
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKLLSILTITTLTTSTPAPLLAAVPLTNTLTSNSNNEYLSIKEMNGVNNNINSITIDKNNNIYFGTDTGAYKLFAGSTTPTKINGISGNVVSIAVWYCNGNVSCNYRYKSDSVNV
SIO_010081: SKUN_RS07950
subclass of: SO_0000673
so part of: SKUN_RS07950
location: 13420..13770
location: region:13420-13770:1
so has part: feature:13420-13770:1:exon

WP_053391595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13420-13770:1:exon

SKUN_RS07955
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07955
old locus tag: SKUN_001728
so part of: sequence
location: 13718..14803
location: region:13718-14803:1
so has part: feature:13718-14803:1:exon
subclass of: SO_0000010

position:13718:1
position: 13718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14803:1
position: 14803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13718-14803:1:exon

SKUN_RS07955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07955
old locus tag: SKUN_001728
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAMFLVIIGTKAIAWMYNNRRHEMKSAITNILIIIIAIPLIPTLFIMANTIMTMIVKLFLQNAPIDTNNIALAIFNSSFMSGVHQFHYIPVSWTFDDSGNFSYIICLVSECFMVYIMFTVCLFLFWRVIELFILLCYSPVVVVMSVADQGHQFRNWKDMVMGRFISYAFMFITYNIFIMSIAVLGQVAILIPNSLSQPIFILLGIFAFGFAVAKSPQIITSLIGGNTAMSDSIGNLMSFGMATNLAKIGGKFAWKSGKFAARNAVGKPLGLTQGISGAMKSGTPFKEATVGTLFGGFNPNTGGVAGAVVGQAIKTKDKVMTNISDYQKFKEQHQQKLNKDSVLKQENINKKKDKGDKNNGK
SIO_010081: SKUN_RS07955
subclass of: SO_0000673
so part of: SKUN_RS07955
location: 13718..14803
location: region:13718-14803:1
so has part: feature:13718-14803:1:exon

WP_144416802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13718-14803:1:exon

SKUN_RS07960
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07960
old locus tag: SKUN_001729
so part of: sequence
location: 14793..15251
location: region:14793-15251:1
so has part: feature:14793-15251:1:exon
subclass of: SO_0000010

position:14793:1
position: 14793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15251:1
position: 15251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14793-15251:1:exon

SKUN_RS07960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07960
old locus tag: SKUN_001729
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENNSKIITKKASRVRFTVSNALGGIGWPELFIIFVAVVLITCSLTLLAKLSLLAGVITTVIVAIFTIFLISPNKNGEKLYYMIFIAFGFLFKRKKHNIENTSNIQIIKNNTADMGSVRSVDEFVVHPNDLKTLKIGECYLKTTLPSGKLFI
SIO_010081: SKUN_RS07960
subclass of: SO_0000673
so part of: SKUN_RS07960
location: 14793..15251
location: region:14793-15251:1
so has part: feature:14793-15251:1:exon

WP_053391597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14793-15251:1:exon

SKUN_RS07965
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07965
old locus tag: SKUN_001730
so part of: sequence
location: 15366..17093
location: region:15366-17093:1
so has part: feature:15366-17093:1:exon
subclass of: SO_0000010

position:15366:1
position: 15366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17093:1
position: 17093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15366-17093:1:exon

SKUN_RS07965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07965
old locus tag: SKUN_001730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKLLNLLSVLTIAGTAMPNVIALNSYERHKRQAPPSLQELITTVNIGEIEINNQERIIARLREINHPILSRPDFLENIVIENITPNSAIIHARINIQANEYSIPSSIRFTLNFTAQRLTLSTVITNINLGDIYSNIPINIYNELVRLNPQIPTLAPSINYLSVTNVTQNSAIIRNIDTQEFVRVNFNTNNYSIASRLTVTNLGELPDNSQDTIAKKILLLNPNMDINYIRSIFNITNNSAIVRGYLPNYTYIDNNDYAHLITDTVNVSFTLKQVKFVSTTTENEYATIKPIATKEELLTNQKIVDKFNNLSKKEKQQKLNEINQHYQTLSQNDKKVFKDKLIVISTSAIGTGIIAVGTKITVGGSASSAAVSTGEAVELTPLLSEGLTAAETLSVVEGTTAVVTEGAVIGAEAGTAAALAPETLGLSLVIGGLAIAGTAIIWWLNNHENNSQAVKHELHNQYNEIEKYYKFLAHDQLKLDINSNEWNKIKQIYQENSNNYQEFKNKIKLEITNFHKENHSGWGGSITDDDINTLIKIIYNHFQEINNHFSSCGNNQGWKIVTNTIGNYFKIEQE
SIO_010081: SKUN_RS07965
subclass of: SO_0000673
so part of: SKUN_RS07965
location: 15366..17093
location: region:15366-17093:1
so has part: feature:15366-17093:1:exon

WP_053391598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15366-17093:1:exon

SKUN_RS07970
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07970
old locus tag: SKUN_001731
so part of: sequence
location: 17862..18506
location: region:17862-18506:1
so has part: feature:17862-18506:1:exon
subclass of: SO_0000010

position:17862:1
position: 17862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18506:1
position: 18506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17862-18506:1:exon

SKUN_RS07970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07970
old locus tag: SKUN_001731
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKTLQQTELINYHFVEINGFNHKIINQLDEKKHVSNFYLPKKCVQQHPTRNNSYKVKIYDKFICVPKKMCFLDKTGKYFLVGLDMFFNYWIYNTQNNNKYRLAGYQAIRDTAIKELHYLTVSARRYEKEQATNPFLSGLTYQQAREQICAESNKLKAEYQTFIQNKYSARIKTNRENNSLVNNYNKEYEKNKGYPPKLSEEELTQLLAELDNLD
SIO_010081: SKUN_RS07970
subclass of: SO_0000673
so part of: SKUN_RS07970
location: 17862..18506
location: region:17862-18506:1
so has part: feature:17862-18506:1:exon

WP_053391599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17862-18506:1:exon

SKUN_RS07975
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07975
old locus tag: SKUN_001732
so part of: sequence
location: 19108..19701
location: region:19108-19701:1
so has part: feature:19108-19701:1:exon
subclass of: SO_0000010

position:19108:1
position: 19108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19701:1
position: 19701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19108-19701:1:exon

SKUN_RS07975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07975
old locus tag: SKUN_001732
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGEQDKIMIMINRWGYLNTEQISLLLNKKENITYKFIMKLVNNKFLNVDTLPKKNYYTLTSKAQSHLGRVHKKSIKVNYYELQHQDMLIKWLCSQTDIIHYQTERELKMENGNLNAYPDLIVFKNDDSEIYVEFERIRKSPDRFKTKLINFRDWLVAGGKIHWIMPTQTLTDWIKNQINNIAAYPLQHTYEIWNNNE
SIO_010081: SKUN_RS07975
subclass of: SO_0000673
so part of: SKUN_RS07975
location: 19108..19701
location: region:19108-19701:1
so has part: feature:19108-19701:1:exon

WP_053391600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19108-19701:1:exon

SKUN_RS07980
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07980
old locus tag: SKUN_001733
so part of: sequence
location: complement(20010..21074)
location: region:20010-21074:-1
so has part: feature:20010-21074:-1:exon
subclass of: SO_0000010

position:20010:-1
position: 20010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21074:-1
position: 21074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20010-21074:-1:exon

SKUN_RS07980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07980
old locus tag: SKUN_001733
inference: COORDINATES: protein motif:HMM:NF025448.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF4263 domain-containing protein
translation: MENNEKNSNEIWKNEIEVGQTLTQKEQDGKIKAIYQYLSKTNKGDYLQAKLTKHIDFPDKIRLKLGRYSKNNPNDFKTWKRNGNNFDDKYECGVQLKSEELKNLINFLKESKNNTFLFHPEERTIYKKINSEDIEILKLIKQKPTILKELDINNLEYAKNEYDIRSLKIEEFENMIANEKLTEDDWQTFLNENIHILQICIPSFFKYIGEKVYAGGKTINGKDGVYPDYAFTDSLNSIAFIEIKKPQTNLMKENTYRNNAFAPSEELSGGISQVLSQRHIYYSKESDKTENNPFYNSPCYLIIGNLSKLNKKQNQSFSLFRNSFMNINIVAFDEILERLKIFIETIKKTTLNTI
SIO_010081: SKUN_RS07980
subclass of: SO_0000673
so part of: SKUN_RS07980
location: complement(20010..21074)
location: region:20010-21074:-1
so has part: feature:20010-21074:-1:exon

WP_053391601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20010-21074:-1:exon

SKUN_RS07985
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07985
old locus tag: SKUN_001734
so part of: sequence
location: 21386..21628
location: region:21386-21628:1
so has part: feature:21386-21628:1:exon
subclass of: SO_0000010

position:21386:1
position: 21386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21628:1
position: 21628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21386-21628:1:exon

SKUN_RS07985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07985
old locus tag: SKUN_001734
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPILDKKDIDIEKKLNKTVSFSAEIKKDKRIKLTPMTCKVNLILKFNELAQKRKWSKTTLMNEILEDYFNRLENSKNEDD
SIO_010081: SKUN_RS07985
subclass of: SO_0000673
so part of: SKUN_RS07985
location: 21386..21628
location: region:21386-21628:1
so has part: feature:21386-21628:1:exon

WP_040094217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21386-21628:1:exon

SKUN_RS07990
type: Gene
subclass of: SO_0000704
RO_0002162: 273035
locus tag: SKUN_RS07990
old locus tag: SKUN_001735
so part of: sequence
location: 21615..22388
location: region:21615-22388:1
so has part: feature:21615-22388:1:exon
subclass of: SO_0000010

position:21615:1
position: 21615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22388:1
position: 22388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21615-22388:1:exon

SKUN_RS07990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 273035
locus tag: SKUN_RS07990
old locus tag: SKUN_001735
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MKMISFCNKKGGVGKTTLCKNVAYKLADDNKKVLLIDLDTQASLSYLLQYENIDMSKSLHKIIASDCEIPINKVIQPTKYKNIDIIVGGETLRKTLPIMREIYDNHNWYLVGLQVYKKNIDIFDSYDYVLIDYPPTTDDLSLNWLIFSDLIIVPTNCDSTSFKGILDLNNNLELIITELKRNKPILKIVFNNISDNDNRTKIMKWLNKYDFSKLLSNVEIKTSEVFTTSNNDFISIWENPYYWRQKQAYEELIKEIK
SIO_010081: SKUN_RS07990
subclass of: SO_0000673
so part of: SKUN_RS07990
location: 21615..22388
location: region:21615-22388:1
so has part: feature:21615-22388:1:exon

WP_040094219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21615-22388:1:exon