Saccharomyces paradoxus chromosome XIV, complete sequence.
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Population-level Yeast Reference Genomes
Submitted (28-APR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (20-JAN-2020) Biotechnology, Delft University of Technology, van der Maasweg 9, Delft, Netherlands 2629 HZ, Netherlands
Submitted (04-FEB-2017) Institute for Research on Cancer and Aging, Nice (IRCAN), Institute for Research on Cancer and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP020255.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JAN-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: S. paradoxus CBS432 PacBio Assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
culture from neotype of Saccharomyces paradoxus
Member of a stationary phase-induced gene family; similar to YNL333W
Protein involved in synthesis of the thiamine precursor HMP; similar to YNL332W
aryl-alcohol dehydrogenase; similar to YNL331C
Histone deacetylase, component of both the Rpd3S and Rpd3L complexes; similar to YNL330C
Constituent of the mitochondrial import motor; similar to YNL328C
Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase; similar to YNL327W
Palmitoyltransferase for Vac8p; similar to YNL326C
Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase; similar to YNL325C
Membrane protein of the plasma membrane and ER; similar to YNL323W
Cell wall glycoprotein involved in beta-glucan assembly; similar to YNL322C
Calcium/H+ antiporter localized to the endoplasmic reticulum membrane; similar to YNL321W
Protein with similarity to hexose transporter family members; similar to YNL318C
Integral subunit of the pre-mRNA CPF complex; similar to YNL317W
Prephenate dehydratase; similar to YNL316C
Positive regulator of allophanate inducible genes; similar to YNL314W
Essential conserved protein with a role in cell wall integrity; similar to YNL313C
Subunit of heterotrimeric Replication Protein A (RPA); similar to YNL312W
Protein co-chaperone with a zinc finger motif; similar to YNL310C
Protein with role in regulation of MBF-specific transcription at Start; similar to YNL309W
Essential nucleolar protein required for 40S ribosome biogenesis; similar to YNL308C
Dual-specificity ser/thr and tyrosine protein kinase; similar to YNL307C
Mitochondrial ribosomal protein of the small subunit; similar to YNL306W
Protein involved in apoptosis; similar to YNL305C
Ribosomal 60S subunit protein L18B; similar to YNL301C
Glycosylphosphatidylinositol-dependent cell wall protein; similar to YNL300W
Non-canonical poly(A) polymerase; similar to YNL299W
Cdc42p-activated signal transducing kinase; similar to YNL298W
Protein with a role in endocytosis and vacuole integrity; similar to YNL297C
pH sensor molecule, component of the RIM101 pathway; similar to YNL294C
Rab GTPase-activating protein; similar to YNL293W
Pseudouridine synthase; similar to YNL292W
N-glycosylated integral membrane protein of the ER and plasma membrane; similar to YNL291C
Subunit of heteropentameric Replication factor C (RF-C); similar to YNL290W
Cyclin, interacts with cyclin-dependent kinase Pho85p; similar to YNL289W
Component of the CCR4-NOT transcriptional complex; similar to YNL288W
Gamma subunit of coatomer; similar to YNL287W
checkpoint factor in transcription; similar to YNL286W
Mitochondrial ribosomal protein of the large subunit; similar to YNL284C
Subunit of both RNase MRP and nuclear RNase P; similar to YNL282W
Heat shock protein regulator; similar to YNL281W
C-14 sterol reductase; similar to YNL280C
Pheromone-regulated multispanning membrane protein; similar to YNL279W
member of the CCR4-NOT transcriptional regulatory complex; similar to YNL278W
L-homoserine-O-acetyltransferase; similar to YNL277W
Boron efflux transporter of the plasma membrane; similar to YNL275W
Glyoxylate reductase; similar to YNL274C
Subunit of a replication-pausing checkpoint complex; similar to YNL273W
Guanyl-nucleotide exchange factor for the small G-protein Sec4p; similar to YNL272C
Arginine transporter; similar to YNL270C
Phosphatidylinositol 4-kinase; similar to YNL267W
Protein with positive role in the multivesicular body sorting pathway; similar to YNL265C
Phosphatidylinositol transfer protein (PITP); similar to YNL264C
Integral membrane protein; similar to YNL263C
Catalytic subunit of DNA polymerase (II) epsilon; similar to YNL262W
Subunit of the origin recognition complex (ORC); similar to YNL261W
Essential protein that forms a complex with Rli1p and Yae1p; similar to YNL260C
Cytosolic copper metallochaperone; similar to YNL259C
Peripheral membrane protein needed for Golgi-to-ER retrograde traffic; similar to YNL258C
Transcription cofactor; similar to YNL257C
Multifunctional enzyme of the folic acid biosynthesis pathway; similar to YNL256W
Translational activator for mRNAs with internal ribosome entry sites; similar to YNL255C
Protein involved in mRNA export; similar to YNL253W
Mitochondrial ribosomal protein of the large subunit; similar to YNL252C
RNA-binding subunit of Nrd1 complex; similar to YNL251C
Subunit of MRX complex with Mre11p and Xrs2p; similar to YNL250W
RNA polymerase I subunit A49; similar to YNL248C
Cysteinyl-tRNA synthetase; similar to YNL247W
Splicing factor required for the first step of pre-mRNA splicing; similar to YNL245C
Translation initiation factor eIF1; similar to YNL244C
Adaptor protein that links actin to clathrin and endocytosis; similar to YNL243W
Peripheral membrane protein required for autophagic vesicle formation; similar to YNL242W
Glucose-6-phosphate dehydrogenase (G6PD); similar to YNL241C
Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery; similar to YNL240C
Cysteine aminopeptidase with homocysteine-thiolactonase activity; similar to YNL239W
Kexin, a subtilisin-like protease (proprotein convertase); similar to YNL238W
Subunit of the RNA polymerase II mediator complex; similar to YNL236W
Targeting subunit for Glc7p protein phosphatase; similar to YNL233W
Exosome non-catalytic core component; similar to YNL232W
Phosphatidylinositol transfer protein (PITP); similar to YNL231C
Nitrogen catabolite repression transcriptional regulator; similar to YNL229C
Co-chaperone that stimulates the ATPase activity of Ssa1p; similar to YNL227C
Component of the spindle pole body outer plaque; similar to YNL225C
Protein that stimulates the ATPase and helicase activities of Prp43p; similar to YNL224C
Conserved cysteine protease required for autophagy; similar to YNL223W
Phosphatase and transcription/RNA-processing factor; similar to YNL222W
Subunit of both RNase MRP and nuclear RNase P; similar to YNL221C
Adenylosuccinate synthase; similar to YNL220W
Mannosyltransferase, involved in N-linked glycosylation; similar to YNL219C
Protein with DNA-dependent ATPase and ssDNA annealing activities; similar to YNL218W
Essential DNA-binding transcription regulator that binds many loci; similar to YNL216W
Protein that associates with the INO80 chromatin remodeling complex; similar to YNL215W
Membrane peroxin of the peroxisomal importomer complex; similar to YNL214W
mRNA-binding protein required for meiosis-specific mRNA splicing; similar to YNL210W
Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; similar to YNL209W
Essential serine kinase involved in the processing of 20S pre-rRNA; similar to YNL207W
Peroxisomal 2,4-dienoyl-CoA reductase; similar to YNL202W
Subunit of protein phosphatase PP4 complex; similar to YNL201C
Transcriptional activator of genes involved in glycolysis; similar to YNL199C
RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci; similar to YNL197C
Sporulation-specific protein with a leucine zipper motif; similar to YNL196C
Integral membrane protein; similar to YNL194C
Component of glutamine amidotransferase (GATase II); similar to YNL191W
Hydrophilin essential in desiccation-rehydration process; similar to YNL190W
Karyopherin alpha-like; similar to YNL189W
Protein involved in karyogamy and spindle pole body duplication; similar to YNL188W
Protein involved in mRNA splicing; similar to YNL187W
Ubiquitin-specific protease, deubiquitinates Ub-protein moieties; similar to YNL186W
Mitochondrial ribosomal protein of the large subunit; similar to YNL185C
Component of the Rix1 complex; similar to YNL182C
Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; similar to YNL180C
Protein component of the small (40S) ribosomal subunit; similar to YNL178W
Mitochondrial ribosomal protein of the large subunit; similar to YNL177C
Nucleolar protein found in preribosomal complexes; similar to YNL175C
Plasma membrane protein; similar to YNL173C
Largest subunit of the Anaphase-Promoting Complex/Cyclosome; similar to YNL172W
Phosphatidylserine decarboxylase of the mitochondrial inner membrane; similar to YNL169C
Basic leucine zipper transcription factor of the ATF/CREB family; similar to YNL167C
Protein involved in organization of septins at the mother-bud neck; similar to YNL166C
Component of the BUB2-dependent spindle checkpoint pathway; similar to YNL164C
Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis; similar to YNL163C
Ribosomal 60S subunit protein L42A; similar to YNL162W
Serine/threonine protein kinase of the the RAM signaling network; similar to YNL161W
Cell wall-related secretory glycoprotein; similar to YNL160W
Subunit of the nuclear inner membrane Asi ubiquitin ligase complex; similar to YNL159C
Essential component of GPI-mannosyltransferase II; similar to YNL158W
Protein required for initiation of G0 program; similar to YNL157W
Protein involved in regulation of sterol biosynthesis; similar to YNL156C
Protein with a role in the ubiquitin-proteasome pathway; similar to YNL155W
Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform; similar to YNL154C
Subunit of the heterohexameric cochaperone prefoldin complex; similar to YNL153C
Essential protein that associates with contractile actomyosin ring; similar to YNL152W
RNA polymerase III subunit C31; similar to YNL151C
Essential protein required for maturation of Gas1p and Pho8p; similar to YNL149C
Alpha-tubulin folding protein; similar to YNL148C
Lsm (Like Sm) protein; similar to YNL147W
Ammonium permease involved in regulation of pseudohyphal growth; similar to YNL142W
Adenine deaminase (adenine aminohydrolase); similar to YNL141W
Subunit of the THO complex; similar to YNL139C
CAP (cyclase-associated protein); similar to YNL138W
Mitochondrial ribosomal component of the small subunit; similar to YNL137C
Subunit of the NuA4 histone acetyltransferase complex; similar to YNL136W
Peptidyl-prolyl cis-trans isomerase (PPIase); similar to YNL135C
Protein required for biogenesis of the small ribosomal subunit; similar to YNL132W
Component of the TOM (Translocase of Outer Membrane) complex; similar to YNL131W
Cholinephosphotransferase; similar to YNL130C
Nicotinamide riboside kinase; similar to YNL129W
PTEN-like protein with no demonstrated inositol lipid phosphatase activity; similar to YNL128W
Protein involved in recovery from cell cycle arrest; similar to YNL127W
Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; similar to YNL126W
Protein with similarity to monocarboxylate permeases; similar to YNL125C
RNA-binding protein required for the assembly of box H/ACA snoRNPs; similar to YNL124W
Serine protease and general molecular chaperone; similar to YNL123W
Component of the TOM (translocase of outer membrane) complex; similar to YNL121C
Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs; similar to YNL119W
Catalytic subunit of the Dcp1p-Dcp2p decapping enzyme complex; similar to YNL118C
Malate synthase, enzyme of the glyoxylate cycle; similar to YNL117W
Ubiquitin-protein ligase (E3); similar to YNL116W
RNA polymerase subunit AC19; similar to YNL113W
ATP-dependent RNA helicase of the DEAD-box protein family; similar to YNL112W
Constituent of 66S pre-ribosomal particles; similar to YNL110C
Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes; similar to YNL107W
Polyphosphatidylinositol phosphatase; similar to YNL106C
Alpha-isopropylmalate synthase (2-isopropylmalate synthase); similar to YNL104C
Leucine-zipper transcriptional activator; similar to YNL103W
Catalytic subunit of the DNA polymerase I alpha-primase complex; similar to YNL102W
Vacuolar transporter; similar to YNL101W
Component of the MICOS complex; similar to YNL100W
protein tyrosine phosphatase; similar to YNL099C
Component of the Rpd3L histone deacetylase complex; similar to YNL097C
Protein component of the small (40S) ribosomal subunit; similar to YNL096C
Phosphatidate phosphatase, converts phosphatidate to diacylglycerol; similar to YNL094W
Stress-induced Rab family GTPase; similar to YNL093W
S-adenosylmethionine-dependent protein methyltransferase; similar to YNL092W
Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; similar to YNL090W
ER protein involved in ER-plasma membrane tethering; similar to YNL087W
Subunit of the BLOC-1 complex involved in endosomal maturation; similar to YNL086W
Protein similar to nucleases that forms a complex with Pbp1p; similar to YNL085W
EH domain-containing protein involved in endocytosis; similar to YNL084C
ATP-binding protein required for mismatch repair; similar to YNL082W
mitochondrial ribosomal protein of the small subunit; similar to YNL081C
Protein involved in N-glycosylation; similar to YNL080C
Major isoform of tropomyosin; similar to YNL079C
Protein localized in the bud neck at G2/M phase; similar to YNL078W
Chaperone with a role in SUMO-mediated protein degradation; similar to YNL077W
Pleiotropic negative transcriptional regulator; similar to YNL076W
Component of the SSU processome; similar to YNL075W
Mitochondrial lysine-tRNA synthetase; similar to YNL073W
Ribonuclease H2 catalytic subunit; similar to YNL072W
Dihydrolipoamide acetyltransferase component (E2) of the PDC; similar to YNL071W
Component of the TOM (translocase of outer membrane) complex; similar to YNL070W
Forkhead family transcription factor; similar to YNL068C
Ribosomal 60S subunit protein L9B; similar to YNL067W
Cell wall protein related to glucanases; similar to YNL066W
Plasma membrane transporter of the major facilitator superfamily; similar to YNL065W
Type I HSP40 co-chaperone; similar to YNL064C
S-adenosylmethionine-dependent methyltransferase; similar to YNL063W
Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; similar to YNL062C
rRNA m5C methyltransferase; similar to YNL061W
Nuclear actin-related protein involved in chromatin remodeling; similar to YNL059C
Mitochondrial porin (voltage-dependent anion channel); similar to YNL055C
Integral vacuolar membrane protein; similar to YNL054W
Dual-specificity protein phosphatase; similar to YNL053W
Subunit Va of cytochrome c oxidase; similar to YNL052W
Component of the conserved oligomeric Golgi complex; similar to YNL051W
Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat; similar to YNL049C
Alpha-1,2-mannosyltransferase; similar to YNL048W
Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; similar to YNL047C
Leucyl aminopeptidase yscIV with epoxide hydrolase activity; similar to YNL045W
Protein localized to COPII vesicles; similar to YNL044W
Component of the conserved oligomeric Golgi complex; similar to YNL041C
Essential subunit of RNA polymerase III transcription factor (TFIIIB); similar to YNL039W
Protein involved in the synthesis of GlcNAc-PI; similar to YNL038W
Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; similar to YNL037C
Tyrosine phosphatase involved in actin organization and endocytosis; similar to YNL032W
mannosyltransferase involved in protein glycosylation; similar to YNL029C
Transcription factor, activates transcription of stress response genes; similar to YNL027W
Component of the Sorting and Assembly Machinery (SAM) complex; similar to YNL026W
Cyclin-like component of the RNA polymerase II holoenzyme; similar to YNL025C
Protein that binds to Fpr1p; similar to YNL023C
rRNA m5C methyltransferase; similar to YNL022C
catalytic subunit of a class II histone deacetylase complex; similar to YNL021W
Serine/threonine protein kinase; similar to YNL020C
Poly (A)+ RNA-binding protein; similar to YNL016W
Cytosolic inhibitor of vacuolar proteinase B (PRB1); similar to YNL015W
Translational elongation factor EF-3; similar to YNL014W
Meiosis-specific prospore protein; similar to YNL012W
Peroxisomal NADP-dependent isocitrate dehydrogenase; similar to YNL009W
Subunit of the nuclear inner membrane Asi ubiquitin ligase complex; similar to YNL008C
Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p; similar to YNL007C
Protein required for the transport of Gap1p; similar to YNL006W
Mitochondrial ribosomal protein of the large subunit; similar to YNL005C
Poly(A+) RNA-binding protein; similar to YNL004W
S-adenosylmethionine transporter of the mitochondrial inner membrane; similar to YNL003C
Nucleolar protein similar to large ribosomal subunit L7 proteins; similar to YNL002C
Protein that facilitates ribosomal subunit dissociation; similar to YNL001W
transmembrane protein involved in export of ammonia; similar to YNR002C
RNA polymerase III subunit C34; similar to YNR003C
Protein with a role in snRNA and snoRNA cap trimethylation; similar to YNR004W
Endosomal protein that forms a complex with Hse1p; similar to YNR006W
Acyltransferase that catalyzes diacylglycerol esterification; similar to YNR008W
Transcriptional co-repressor of MBF-regulated gene expression; similar to YNR009W
Subunit of the RNA polymerase II mediator complex; similar to YNR010W
RNA-dependent DExD/H-box ATPase; similar to YNR011C
Uridine/cytidine kinase; similar to YNR012W
Low-affinity vacuolar phosphate transporter; similar to YNR013C
Dihydrouridine synthase; similar to YNR015W
Acetyl-CoA carboxylase, biotin containing enzyme; similar to YNR016C
Essential component of the TIM23 complex; similar to YNR017W
Cytochrome c oxidase subunit; similar to YNR018W
Acyl-CoA:sterol acyltransferase; similar to YNR019W
metalloprotease of the mitochondrial inner membrane; similar to YNR020C
Mitochondrial ribosomal protein of the large subunit; similar to YNR022C
73 kDa subunit of the SWI/SNF chromatin remodeling complex; similar to YNR023W
Nuclear exosome-associated RNA binding protein; similar to YNR024W
Guanine nucleotide exchange factor (GEF); similar to YNR026C
Peptidyl-prolyl cis-trans isomerase (cyclophilin); similar to YNR028W
Alpha-1,6-mannosyltransferase localized to the ER; similar to YNR030W
MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway; similar to YNR031C
serine/threonine protein phosphatase; similar to YNR032W
Para-aminobenzoate (PABA) synthase; similar to YNR033W
Protein with a possible role in tRNA export; similar to YNR034W
Subunit of the ARP2/3 complex; similar to YNR035C
Mitochondrial protein; similar to YNR036C
Mitochondrial ribosomal protein of the small subunit; similar to YNR037C
Essential protein involved in ribosome biogenesis; similar to YNR038W
Endoplasmic reticulum zinc transporter; similar to YNR039C
Para hydroxybenzoate polyprenyl transferase; similar to YNR041C
Mevalonate pyrophosphate decarboxylase; similar to YNR043W
Anchorage subunit of a-agglutinin of a-cells; similar to YNR044W
Mitochondrial translational activator specific for the COX3 mRNA; similar to YNR045W
Protein involved in methylation of tRNA, rRNA, and translation factors; similar to YNR046W
Ser/Thr protein kinase; similar to YNR047W
Potential noncatalytic subunit for phospholipid translocase Dnf3p; similar to YNR048W
Probable component of the secretory vesicle docking complex; similar to YNR049C
Saccharopine dehydrogenase (NADP+, L-glutamate-forming); similar to YNR050C
Ubiquitin protease cofactor; similar to YNR051C
RNase of the DEDD superfamily; similar to YNR052C
Essential nucleolar protein involved in pre-18S rRNA processing; similar to YNR054C
transporter in the major facilitator superfamily; similar to YNR055C
transmembrane protein involved in the biotin biosynthesis; similar to YNR056C
Dethiobiotin synthetase; similar to YNR057C
7,8-diamino-pelargonic acid aminotransferase (DAPA); similar to YNR058W
alpha-1,3-mannosyltransferase; similar to YNR059W
Daughter cell-specific secreted protein with similarity to glucanases; similar to YNR067C
transporter of the ATP-binding cassette (ABC) family; similar to YNR070W
mannitol dehydrogenase; similar to YNR073C