Saccharomyces paradoxus chromosome X, complete sequence.
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Population-level Yeast Reference Genomes
Submitted (28-APR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (20-JAN-2020) Biotechnology, Delft University of Technology, van der Maasweg 9, Delft, Netherlands 2629 HZ, Netherlands
Submitted (04-FEB-2017) Institute for Research on Cancer and Aging, Nice (IRCAN), Institute for Research on Cancer and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP020251.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JAN-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: S. paradoxus CBS432 PacBio Assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
culture from neotype of Saccharomyces paradoxus
Endosomal ferric enterobactin transporter; similar to YOL158C
hexose transporter that is nearly identical to Hxt9p; similar to YOL156W
Cytoplasmic protein involved in the regulation of enolase (ENO1); similar to YJL217W
High-affinity maltose transporter (alpha-glucoside transporter); similar to YGR289C
Proton-coupled oligopeptide transporter of the plasma membrane; similar to YJL212C
RING-finger peroxin and E3 ubiquitin ligase; similar to YJL210W
Mitochondrial protein, regulator of COB mRNA stability and translation; similar to YJL209W
Major mitochondrial nuclease; similar to YJL208C
AP-1 accessory protein; similar to YJL207C
F-box protein involved in recycling endocytosed proteins; similar to YJL204C
Subunit of the SF3a splicing factor complex; similar to YJL203W
mitochondrial aconitase isozyme; similar to YJL200C
Low-affinity phosphate transporter; similar to YJL198W
Ubiquitin-specific protease; similar to YJL197W
Elongase I, medium-chain acyl elongase; similar to YJL196C
Essential ATP-binding protein required for DNA replication; similar to YJL194W
Protein component of the small (40S) ribosomal subunit; similar to YJL190C
Ribosomal 60S subunit protein L39; similar to YJL189W
Protein kinase that regulates the G2/M transition; similar to YJL187C
Alpha-1,2-mannosyltransferase; similar to YJL186W
Pex3p interacting protein, required for pexophagy; similar to YJL185C
Component of the EKC/KEOPS protein complex; similar to YJL184W
Subunit of a Golgi mannosyltransferase complex; similar to YJL183W
Assembly factor for the F1 sector of mitochondrial F1F0 ATP synthase; similar to YJL180C
Subunit of heterohexameric prefoldin; similar to YJL179W
Type I membrane protein involved in autophagy and the Cvt pathway; similar to YJL178C
Ribosomal 60S subunit protein L17B; similar to YJL177W
Subunit of the SWI/SNF chromatin remodeling complex; similar to YJL176C
Glycoprotein involved in cell wall beta-glucan assembly; similar to YJL174W
Subunit of heterotrimeric Replication Protein A (RPA); similar to YJL173C
Vacuolar carboxypeptidase S; similar to YJL172W
Protein that regulates signaling from G protein beta subunit Ste4p; similar to YJL170C
Histone methyltransferase with a role in transcriptional elongation; similar to YJL168C
Farnesyl pyrophosphate synthetase; similar to YJL167W
Subunit 8 of ubiquinol cytochrome-c reductase (Complex III); similar to YJL166W
cAMP-dependent protein kinase catalytic subunit; similar to YJL164C
O-mannosylated heat shock protein; similar to YJL159W
Mannose-containing glycoprotein constituent of the cell wall; similar to YJL158C
CDK inhibitor and nuclear anchor; similar to YJL157C
Serine protease of SPS plasma membrane amino acid sensor system; similar to YJL156C
Fructose-2,6-bisphosphatase, required for glucose metabolism; similar to YJL155C
Endosomal subunit of membrane-associated retromer complex; similar to YJL154C
Inositol-3-phosphate synthase; similar to YJL153C
Protein involved in efficient MVB sorting of proteins to the vacuole; similar to YJL151C
SCF ubiquitin ligase F-box protein; similar to YJL149W
RNA polymerase I subunit A34.5; similar to YJL148W
Protein involved in modulation of Ime2p activity during meiosis; similar to YJL146W
Non-classical phosphatidylinositol transfer protein (PITP); similar to YJL145W
Cytoplasmic hydrophilin essential in desiccation-rehydration process; similar to YJL144W
Essential component of the TIM23 complex; similar to YJL143W
Serine-threonine protein kinase; similar to YJL141C
RNA polymerase II subunit B32; similar to YJL140W
Mannosyltransferase involved in protein N-glycosylation; similar to YJL139C
Translation initiation factor eIF4A; similar to YJL138C
Glycogenin glucosyltransferase; similar to YJL137C
Long-chain base-1-phosphate phosphatase; similar to YJL134W
Iron transporter, mediates Fe2+ transport across inner mito membrane; similar to YJL133W
Mitochondrial translation initiation factor 3 (IF3, mIF3); similar to YJL131C
Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase; similar to YJL130C
Component of the Trk1p-Trk2p potassium transport system; similar to YJL129C
MAP kinase kinase of the HOG signaling pathway; similar to YJL128C
histone acetylase with a role in transcriptional silencing; similar to YJL127C
Subunit of tRNA (1-methyladenosine) methyltransferase; similar to YJL125C
Lsm (Like Sm) protein; similar to YJL124C
Shuttling pre-60S factor; similar to YJL122W
D-ribulose-5-phosphate 3-epimerase; similar to YJL121C
Endoplasmic reticulum (ER) resident protein; similar to YJL117W
Protein involved in mitochondrion organization; similar to YJL116C
Nucleosome assembly factor; similar to YJL115W
Peripheral protein of cytosolic face of mitochondrial outer membrane; similar to YJL112W
Subunit of the cytosolic chaperonin Cct ring complex; similar to YJL111W
GATA zinc finger protein; similar to YJL110C
Serine/threonine protein kinase involved in activation of meiosis; similar to YJL106W
Subunit of the import motor (PAM complex); similar to YJL104W
Mitochondrial elongation factor involved in translational elongation; similar to YJL102W
Gamma glutamylcysteine synthetase; similar to YJL101C
Type II phosphatidylinositol 4-kinase; similar to YJL100W
Member of the ChAPs (Chs5p-Arf1p-binding proteins) family; similar to YJL099W
Protein that forms a complex with the Sit4p protein phosphatase; similar to YJL098W
Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane; similar to YJL097W
Mitochondrial ribosomal protein of the large subunit; similar to YJL096W
MAPKKK acting in the protein kinase C signaling pathway; similar to YJL095W
Outward-rectifier potassium channel of the plasma membrane; similar to YJL093C
DNA helicase and DNA-dependent ATPase; similar to YJL092W
Protein involved in the inositol acylation of GlcN-PI; similar to YJL091C
DNA replication initiation protein; similar to YJL090C
C6 zinc cluster transcriptional activator; similar to YJL089W
Ornithine carbamoyltransferase; similar to YJL088W
Subunit of the exocyst complex; similar to YJL085W
EH domain-containing protein; similar to YJL083W
Nuclear actin-related protein involved in chromatin remodeling; similar to YJL081C
Essential RNA-binding G protein effector of mating response pathway; similar to YJL080C
Sterol binding protein involved in the export of acetylated sterols; similar to YJL079C
Core subunit of the RENT complex; similar to YJL076W
Subunit of the multiprotein cohesin complex; similar to YJL074C
DnaJ-like chaperone required for nuclear membrane fusion during mating; similar to YJL073W
Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); similar to YJL072C
Acetylglutamate synthase (glutamate N-acetyltransferase); similar to YJL071W
metallo-dependent hydrolase superfamily protein; similar to YJL070C
Small-subunit processome protein involved in pre-18S rRNA maturation; similar to YJL069C
Esterase that can function as an S-formylglutathione hydrolase; similar to YJL068C
Subunit of ISW2/yCHRAC chromatin accessibility complex; similar to YJL065C
Mitochondrial ribosomal protein of the large subunit; similar to YJL063C
Integral plasma membrane protein; similar to YJL062W
Linker nucleoporin component of the nuclear pore complex (NPC); similar to YJL061W
Kynurenine aminotransferase; similar to YJL060W
Protein required for the ATP-dependent transport of arginine; similar to YJL059W
Subunit of TORC2 membrane-associated complex; similar to YJL058C
Protein kinase of unknown cellular role; similar to YJL057C
Zinc-regulated transcription factor; similar to YJL056C
Component of the mitochondrial TIM22 complex; similar to YJL054W
Vacuolar protein component of the retromer; similar to YJL053W
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1; similar to YJL052W
ATP-dependent 3'-5' RNA helicase of the DExD/H family; similar to YJL050W
UBX (ubiquitin regulatory X) domain-containing protein; similar to YJL048C
Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex; similar to YJL047C
lipoate-protein ligase; similar to YJL046W
Essential subunit of the inner ring of the nuclear pore complex (NPC); similar to YJL039C
Microtubule-associated protein involved in microtubule organization; similar to YJL042W
GTPase-activating protein (GAP) for Rab family member Ypt6p; similar to YJL044C
Minor succinate dehydrogenase isozyme; similar to YJL045W
Protein involved in outer spore wall assembly; similar to YJL038C
Protein involved in outer spore wall assembly; similar to YJL037W
Subunit of tRNA-specific adenosine-34 deaminase; similar to YJL035C
ATPase involved in protein import into the ER; similar to YJL034W
DEAD box RNA helicase; similar to YJL033W
Alpha subunit of Type II geranylgeranyltransferase; similar to YJL031C
Component of the spindle-assembly checkpoint complex; similar to YJL030W
Component of the GARP (Golgi-associated retrograde protein) complex; similar to YJL029C
Ribonucleotide-diphosphate reductase (RNR), small subunit; similar to YJL026W
Component of the core factor (CF) rDNA transcription factor complex; similar to YJL025W
Small subunit of the clathrin-associated adaptor complex AP-3; similar to YJL024C
Protein required for respiratory growth; similar to YJL023C
Nuclear envelope protein; similar to YJL019W
Subunit of the cytosolic chaperonin Cct ring complex; similar to YJL014W
Subunit of spindle-assembly checkpoint complex; similar to YJL013C
Vacuolar membrane polyphosphate polymerase; similar to YJL012C
RNA polymerase III subunit C17; similar to YJL011C
Essential subunit of U3-containing 90S preribosome; similar to YJL010C
Subunit of the cytosolic chaperonin Cct ring complex; similar to YJL008C
Beta subunit of C-terminal domain kinase I (CTDK-I); similar to YJL006C
Integral membrane protein of the Golgi; similar to YJL004C
Mitochondrial inner membrane protein; similar to YJL003W
Alpha subunit of the oligosaccharyltransferase complex of the ER lumen; similar to YJL002C
Beta 1 subunit of the 20S proteasome; similar to YJL001W
Vacuolar transporter; similar to YJR001W
Component of the SSU processome and 90S preribosome; similar to YJR002W
Alpha-agglutinin of alpha-cells; similar to YJR004C
Subunit of DNA polymerase delta (polymerase III); similar to YJR006W
Alpha subunit of the translation initiation factor eIF2; similar to YJR007W
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2; similar to YJR009C
Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I; similar to YJR013W
Dihydroxyacid dehydratase; similar to YJR016C
Peptidylprolyl-cis/trans-isomerase (PPIase); similar to YJR017C
Peroxisomal acyl-CoA thioesterase; similar to YJR019C
Protein involved in early stages of meiotic recombination; similar to YJR021C
Lsm (Like Sm) protein; similar to YJR022W
5'-methylthioribulose-1-phosphate dehydratase; similar to YJR024C
3-hydroxyanthranilic acid dioxygenase; similar to YJR025C
Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs); similar to YJR031C
Peptidyl-prolyl cis-trans isomerase (cyclophilin); similar to YJR032W
Subunit of RAVE complex (Rav1p, Rav2p, Skp1p); similar to YJR033C
Protein required for assembly of cytochrome c oxidase; similar to YJR034W
Protein involved in transcription-coupled nucleotide excision repair; similar to YJR035W
Protein with similarity to hect domain E3 ubiquitin-protein ligases; similar to YJR036C
Voltage-gated chloride channel; similar to YJR040W
Protein required for normal metabolism of the rRNA primary transcript; similar to YJR041C
Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); similar to YJR042W
Third subunit of DNA polymerase delta; similar to YJR043C
Late endosomal protein involved in late endosome to vacuole transport; similar to YJR044C
DNA replication licensing factor; similar to YJR046W
Translation elongation factor eIF-5A; similar to YJR047C
Cytochrome c, isoform 1; similar to YJR048W
Member of the NineTeen Complex (NTC); similar to YJR050W
Fumarate reductase, catalyzes the reduction of fumarate to succinate; similar to YJR051W
Nucleotide excision repair (NER) protein; similar to YJR052W
Component of the GTPase-activating Bfa1p-Bub2p complex; similar to YJR053W
Potassium transporter that mediates K+ influx; similar to YJR054W
Protein involved in C/D snoRNP assembly; similar to YJR055W
Thymidylate and uridylate kinase; similar to YJR057W
Small subunit of the clathrin-associated adaptor complex AP-2; similar to YJR058C
serine/threonine protein kinase; similar to YJR059W
Basic helix-loop-helix (bHLH) protein; similar to YJR060W
RNA polymerase I subunit A12.2; similar to YJR063W
Subunit of the cytosolic chaperonin Cct ring complex; similar to YJR064W
Essential component of the Arp2/3 complex; similar to YJR065C
PIK-related protein kinase and rapamycin target; similar to YJR066W
Protein that forms a complex with Lto1p and Rli1p; similar to YJR067C
Subunit of heteropentameric Replication factor C (RF-C); similar to YJR068W
Nucleoside triphosphate pyrophosphohydrolase; similar to YJR069C
Deoxyhypusine hydroxylase; similar to YJR070C
Member of the conserved GPN-loop GTPase family; similar to YJR072C
Methylene-fatty-acyl-phospholipid synthase; similar to YJR073C
Conserved nuclear protein that interacts with GTP-Gsp1p; similar to YJR074W
Alpha-1,6-mannosyltransferase; similar to YJR075W
Component of the septin ring that is required for cytokinesis; similar to YJR076C
Mitochondrial phosphate carrier; similar to YJR077C
tryptophan 2,3-dioxygenase or indoleamine 2,3-dioxygenase; similar to YJR078W
Protein with a role in determining mitochondrial architecture; similar to YJR080C
Subunit of the NuA4 acetyltransferase complex; similar to YJR082C
Protein that forms a complex with Thp3p; similar to YJR084W
G protein gamma subunit; similar to YJR086W
Member of conserved ER transmembrane complex; similar to YJR088C
Subunit of chromosomal passenger complex (CPC); similar to YJR089W
F-box protein component of an SCF ubiquitin-ligase complex; similar to YJR090C
Member of the Puf family of RNA-binding proteins; similar to YJR091C
Anillin-like protein involved in bud-site selection; similar to YJR092W
Subunit of cleavage polyadenylation factor (CPF); similar to YJR093C
Master regulator of meiosis that is active only during meiotic events; similar to YJR094C
Mitochondrial succinate-fumarate transporter; similar to YJR095W
Xylose and arabinose reductase; similar to YJR096W
Ubiquitin C-terminal hydrolase; similar to YJR099W
Mitochondrial ribosomal protein of the small subunit; similar to YJR101W
Component of the ESCRT-II complex; similar to YJR102C
Minor CTP synthase isozyme (see also URA7); similar to YJR103W
Cytosolic copper-zinc superoxide dismutase; similar to YJR104C
Large subunit of carbamoyl phosphate synthetase; similar to YJR109C
Phosphatidylinositol 3-phosphate (PI3P) phosphatase; similar to YJR110W
Essential component of the MIND kinetochore complex; similar to YJR112W
Mitochondrial ribosomal protein of the small subunit; similar to YJR113C
zinc metalloprotease; similar to YJR117W
JmjC domain family histone demethylase; similar to YJR119C
Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase; similar to YJR121W
Protein involved in incorporating iron-sulfur clusters into proteins; similar to YJR122W
Protein component of the small (40S) ribosomal subunit; similar to YJR123W
Protein containing an N-terminal epsin-like domain; similar to YJR125C
S-adenosylmethionine-dependent methyltransferase; similar to YJR129C
Cystathionine gamma-synthase, converts cysteine into cystathionine; similar to YJR130C
Alpha-1,2-mannosidase; similar to YJR131W
Xanthine-guanine phosphoribosyl transferase; similar to YJR133W
Outer kinetochore protein and component of the Ctf3 subcomplex; similar to YJR135C
Subunit of the ASTRA complex, involved in chromatin remodeling; similar to YJR136C
Sulfite reductase beta subunit; similar to YJR137C
GTPase-activating protein (GAP), subunit of SEA and Iml1p complexes; similar to YJR138W
Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase); similar to YJR139C
Subunit of the HIR complex; similar to YJR140C
8-oxo-dGTP diphosphatase of the Nudix hydrolase family; similar to YJR142W
Protein O-mannosyltransferase; similar to YJR143C
Protein with a role in mitochondrial DNA recombinational repair; similar to YJR144W
Protein component of the small (40S) ribosomal subunit; similar to YJR145C
Protein with similarity to heat shock transcription factors; similar to YJR147W
Cytosolic branched-chain amino acid (BCAA) aminotransferase; similar to YJR148W
Cell wall mannoprotein; similar to YJR150C
Endo-polygalacturonase; similar to YJR153W
Protein involved in synthesis of the thiamine precursor HMP; similar to YNL332W
Member of a stationary phase-induced gene family; similar to YNL333W